Wall clock time and date at job start Tue Mar 31 2020 18:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 N 1.46288 * 113.99905 * 2 1 4 4 C 1.46893 * 111.00379 * 116.04570 * 3 2 1 5 5 C 1.46901 * 110.99800 * 239.99806 * 3 2 1 6 6 C 1.53006 * 109.47222 * 174.99932 * 5 3 2 7 7 N 1.46499 * 109.46968 * 180.02562 * 6 5 3 8 8 C 1.34781 * 119.99851 * 180.02562 * 7 6 5 9 9 O 1.21359 * 119.99673 * 0.02562 * 8 7 6 10 10 C 1.49354 * 120.00058 * 179.97438 * 8 7 6 11 11 O 1.21376 * 119.99810 * 0.02562 * 10 8 7 12 12 N 1.34781 * 120.00058 * 179.97438 * 10 8 7 13 13 C 1.39715 * 119.99781 * 185.27575 * 12 10 8 14 14 C 1.38934 * 120.07394 * 213.32338 * 13 12 10 15 15 C 1.38098 * 119.92297 * 180.02562 * 14 13 12 16 16 C 1.38295 * 120.07470 * 0.03068 * 15 14 13 17 17 C 1.50697 * 119.91952 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47160 * 90.00090 * 17 16 15 19 19 H 1.08000 * 119.99736 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99832 * 180.27507 * 18 17 16 21 21 N 1.31516 * 120.00157 * 359.71894 * 20 18 17 22 22 Si 1.86797 * 119.99786 * 179.72367 * 20 18 17 23 23 H 1.48501 * 109.47462 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47007 * 119.99830 * 22 20 18 25 25 H 1.48501 * 109.47298 * 239.99676 * 22 20 18 26 26 C 1.38285 * 120.15328 * 0.24526 * 16 15 14 27 27 C 1.38095 * 120.07904 * 359.45568 * 26 16 15 28 28 H 1.08999 * 109.47352 * 60.00455 * 1 2 3 29 29 H 1.09004 * 109.47381 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47408 * 300.00328 * 1 2 3 31 31 H 1.09004 * 109.47815 * 183.95440 * 4 3 2 32 32 H 1.09001 * 109.47052 * 303.95134 * 4 3 2 33 33 H 1.09000 * 109.47189 * 63.94943 * 4 3 2 34 34 H 1.09001 * 109.47341 * 54.99883 * 5 3 2 35 35 H 1.09001 * 109.47557 * 294.99906 * 5 3 2 36 36 H 1.09003 * 109.47133 * 60.00269 * 6 5 3 37 37 H 1.08998 * 109.47148 * 299.99719 * 6 5 3 38 38 H 0.96994 * 120.00678 * 359.97438 * 7 6 5 39 39 H 0.97001 * 119.99339 * 5.27650 * 12 10 8 40 40 H 1.07996 * 120.03554 * 0.02562 * 14 13 12 41 41 H 1.08001 * 119.95994 * 180.02562 * 15 14 13 42 42 H 1.08993 * 109.47609 * 329.99696 * 17 16 15 43 43 H 1.09000 * 109.46807 * 209.99744 * 17 16 15 44 44 H 0.97000 * 120.00314 * 180.02562 * 21 20 18 45 45 H 1.08002 * 119.96303 * 179.72578 * 26 16 15 46 46 H 1.08002 * 120.04594 * 180.24674 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3364 0.0000 4 6 2.7882 1.5725 1.2321 5 6 2.8646 1.5384 -1.1877 6 6 3.3674 2.9832 -1.2170 7 7 4.2052 3.1847 -2.4018 8 6 4.7618 4.3895 -2.6365 9 8 4.5694 5.3073 -1.8660 10 6 5.6164 4.5949 -3.8440 11 8 5.8092 3.6769 -4.6143 12 7 6.1726 5.7999 -4.0790 13 6 6.8801 6.0238 -5.2628 14 6 7.9741 6.8802 -5.2687 15 6 8.6708 7.0996 -6.4407 16 6 8.2803 6.4686 -7.6077 17 6 9.0427 6.7111 -8.8847 18 6 10.1533 5.6997 -9.0065 19 1 10.2933 4.9560 -8.2359 20 6 10.9945 5.7277 -10.0985 21 7 10.8243 6.6336 -11.0367 22 14 12.3759 4.4790 -10.2456 23 1 12.3538 3.5752 -9.0675 24 1 12.1926 3.6818 -11.4851 25 1 13.6798 5.1874 -10.3010 26 6 7.1884 5.6201 -7.6066 27 6 6.4908 5.3912 -6.4369 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.1610 2.5968 1.2379 32 1 2.1421 1.4162 2.0959 33 1 3.6286 0.8797 1.2768 34 1 2.2792 1.3392 -2.0853 35 1 3.7156 0.8583 -1.1506 36 1 3.9529 3.1824 -0.3194 37 1 2.5165 3.6633 -1.2542 38 1 4.3599 2.4509 -3.0170 39 1 6.0817 6.5115 -3.4262 40 1 8.2793 7.3736 -4.3578 41 1 9.5216 7.7649 -6.4459 42 1 9.4659 7.7154 -8.8702 43 1 8.3676 6.6136 -9.7350 44 1 11.4158 6.6531 -11.8052 45 1 6.8833 5.1324 -8.5207 46 1 5.6405 4.7253 -6.4359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120910978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:17 Heat of formation + Delta-G solvation = -58.758058 kcal Electronic energy + Delta-G solvation = -27104.882170 eV Core-core repulsion = 22995.880495 eV Total energy + Delta-G solvation = -4109.001675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.14694 -40.57354 -39.35299 -38.64201 -36.93898 -36.26997 -35.02677 -34.51427 -32.30585 -31.82641 -30.26688 -28.76934 -27.65544 -26.71737 -25.53492 -24.34879 -23.83944 -22.49512 -22.09324 -21.30187 -19.86633 -18.63747 -18.49835 -18.14219 -17.61483 -17.36674 -16.82928 -16.70251 -16.53543 -16.27873 -15.96227 -15.95230 -15.47838 -15.28714 -14.82120 -14.63925 -14.52011 -14.48764 -14.29836 -14.05358 -13.70575 -13.35990 -13.33058 -13.22768 -13.12969 -12.90053 -12.64809 -12.62631 -12.44256 -12.20170 -12.03284 -11.67298 -11.52684 -11.13569 -11.05633 -10.78550 -10.60005 -10.42329 -9.88054 -9.80124 -8.97079 -8.18846 -6.32599 -0.04070 0.53987 0.64375 0.98784 1.39311 1.40321 1.53533 1.57791 2.00576 2.40154 2.52756 2.96216 3.11161 3.25668 3.56596 3.83787 3.98862 4.01691 4.10337 4.30082 4.36341 4.44183 4.53276 4.53911 4.58273 4.62988 4.64327 4.67292 4.73866 4.75222 4.88950 4.95218 4.99879 5.09495 5.24971 5.28671 5.38477 5.38858 5.54557 5.55784 5.75460 5.80044 5.90665 6.06543 6.08157 6.20855 6.23447 6.60726 6.80155 6.80341 7.35997 8.89488 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.001703 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.975912 B =16435.820754 C =17129.581586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.284 6.284 3 N -0.371 5.371 4 C -0.001 4.001 5 C 0.033 3.967 6 C 0.128 3.872 7 N -0.686 5.686 8 C 0.524 3.476 9 O -0.531 6.531 10 C 0.503 3.497 11 O -0.523 6.523 12 N -0.626 5.626 13 C 0.110 3.890 14 C -0.122 4.122 15 C -0.112 4.112 16 C -0.069 4.069 17 C 0.056 3.944 18 C -0.529 4.529 19 H 0.053 0.947 20 C 0.006 3.994 21 N -0.928 5.928 22 Si 0.963 3.037 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.275 1.275 26 C -0.118 4.118 27 C -0.118 4.118 28 H 0.047 0.953 29 H 0.105 0.895 30 H 0.049 0.951 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.421 0.579 39 H 0.432 0.568 40 H 0.159 0.841 41 H 0.128 0.872 42 H 0.009 0.991 43 H 0.004 0.996 44 H 0.265 0.735 45 H 0.116 0.884 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.502 -8.532 25.826 33.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.289 6.289 3 N -0.140 5.140 4 C -0.149 4.149 5 C -0.096 4.096 6 C 0.005 3.995 7 N -0.341 5.341 8 C 0.304 3.696 9 O -0.407 6.407 10 C 0.286 3.714 11 O -0.399 6.399 12 N -0.273 5.273 13 C 0.017 3.983 14 C -0.141 4.141 15 C -0.131 4.131 16 C -0.070 4.070 17 C 0.019 3.981 18 C -0.567 4.567 19 H 0.071 0.929 20 C -0.192 4.192 21 N -0.568 5.568 22 Si 0.788 3.212 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.200 1.200 26 C -0.136 4.136 27 C -0.137 4.137 28 H 0.066 0.934 29 H 0.123 0.877 30 H 0.068 0.932 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.259 0.741 39 H 0.272 0.728 40 H 0.176 0.824 41 H 0.146 0.854 42 H 0.028 0.972 43 H 0.022 0.978 44 H 0.074 0.926 45 H 0.134 0.866 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.801 -8.374 25.728 33.528 hybrid contribution 1.341 -0.951 -0.701 1.787 sum -18.460 -9.325 25.028 32.467 Atomic orbital electron populations 1.22797 0.79102 1.03017 1.01011 1.90685 1.22555 1.18629 1.97026 1.67471 1.34283 1.08670 1.03589 1.22940 0.97507 1.02716 0.91716 1.22442 0.97116 0.95351 0.94693 1.21407 0.94838 0.95966 0.87302 1.45545 1.48899 1.12211 1.27416 1.19560 0.80936 0.83794 0.85334 1.90789 1.60747 1.41734 1.47466 1.20412 0.81218 0.83013 0.86801 1.90822 1.59331 1.41538 1.48176 1.42936 1.50651 1.14040 1.19720 1.17567 0.94581 1.00911 0.85277 1.21054 0.93571 1.00343 0.99180 1.20991 0.99917 1.00452 0.91716 1.20474 0.94505 0.95139 0.96854 1.18113 0.93755 0.96170 0.90067 1.21421 1.13884 1.15074 1.06280 0.92911 1.25879 1.00274 0.97776 0.95266 1.70077 1.39780 1.36044 1.10946 0.85425 0.78747 0.78850 0.78203 1.19179 1.20258 1.20007 1.20943 0.95915 0.98620 0.98154 1.21029 1.00799 1.00897 0.91014 0.93420 0.87690 0.93206 0.87530 0.89821 0.94103 0.88635 0.92400 0.89607 0.89468 0.74099 0.72840 0.82384 0.85365 0.97226 0.97774 0.92569 0.86575 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 11.51 113.37 1.30 1.67 16 2 O -0.28 -4.33 10.96 -50.13 -0.55 -4.88 16 3 N -0.37 -4.60 5.14 -537.14 -2.76 -7.36 16 4 C 0.00 -0.01 9.77 127.69 1.25 1.24 16 5 C 0.03 0.34 5.63 86.30 0.49 0.83 16 6 C 0.13 1.38 5.47 86.38 0.47 1.86 16 7 N -0.69 -9.63 5.55 -464.49 -2.58 -12.21 16 8 C 0.52 10.16 7.89 87.24 0.69 10.85 16 9 O -0.53 -11.79 16.48 -3.27 -0.05 -11.85 16 10 C 0.50 11.99 7.62 87.24 0.67 12.65 16 11 O -0.52 -15.21 14.16 -3.33 -0.05 -15.26 16 12 N -0.63 -14.60 5.32 -304.83 -1.62 -16.22 16 13 C 0.11 3.28 6.28 38.22 0.24 3.52 16 14 C -0.12 -3.57 9.97 22.40 0.22 -3.35 16 15 C -0.11 -4.14 9.69 22.25 0.22 -3.93 16 16 C -0.07 -3.03 5.07 -19.84 -0.10 -3.13 16 17 C 0.06 2.98 5.10 29.10 0.15 3.13 16 18 C -0.53 -30.34 9.09 25.60 0.23 -30.11 16 19 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 20 C 0.01 0.36 5.46 84.65 0.46 0.82 16 21 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 22 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 C -0.12 -4.73 9.69 22.25 0.22 -4.51 16 27 C -0.12 -4.06 8.65 22.40 0.19 -3.86 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.11 0.66 6.33 -2.39 -0.02 0.64 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 0.86 6.42 -2.39 -0.02 0.85 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.42 5.23 7.94 -92.71 -0.74 4.49 16 39 H 0.43 7.77 8.30 -92.71 -0.77 7.00 16 40 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 41 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 42 H 0.01 0.53 8.08 -2.39 -0.02 0.51 16 43 H 0.00 0.22 8.08 -2.39 -0.02 0.21 16 44 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.12 4.68 8.06 -2.91 -0.02 4.65 16 46 H 0.13 4.31 6.42 -2.91 -0.02 4.29 16 Total: -1.00 -71.93 395.58 0.90 -71.03 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -0.49 Total: 17.97 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 6.69 Total: -12.33 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -6.68 Total: -91.31 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.65 Total: -31.98 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -71.93 0.90 -71.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120910978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.274 kcal (2) G-P(sol) polarization free energy of solvation -71.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds