Wall clock time and date at job start Tue Mar 31 2020 18:56:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35905 * 116.99604 * 2 1
4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1
5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2
6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3
7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4
8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5
9 9 C 1.50695 * 109.46899 * 269.97898 * 8 7 6
10 10 O 1.21283 * 120.00686 * 359.97438 * 9 8 7
11 11 N 1.34784 * 119.99672 * 179.97438 * 9 8 7
12 12 C 1.46500 * 119.99937 * 179.97438 * 11 9 8
13 13 C 1.53000 * 109.47284 * 180.02562 * 12 11 9
14 14 N 1.46901 * 109.47047 * 180.02562 * 13 12 11
15 15 C 1.46900 * 110.99758 * 180.02562 * 14 13 12
16 16 C 1.50696 * 109.47073 * 179.97438 * 15 14 13
17 17 O 1.21292 * 120.00073 * 359.97438 * 16 15 14
18 18 N 1.34785 * 120.00293 * 179.97438 * 16 15 14
19 19 C 1.37088 * 120.00196 * 180.02562 * 18 16 15
20 20 H 1.07997 * 120.00329 * 359.97438 * 19 18 16
21 21 C 1.38951 * 119.99912 * 180.02562 * 19 18 16
22 22 N 1.31408 * 119.99904 * 359.97438 * 21 19 18
23 23 Si 1.86799 * 120.00052 * 179.97438 * 21 19 18
24 24 H 1.48503 * 109.47159 * 89.99711 * 23 21 19
25 25 H 1.48491 * 109.47282 * 209.99703 * 23 21 19
26 26 H 1.48506 * 109.47345 * 330.00289 * 23 21 19
27 27 C 1.38159 * 120.05555 * 0.02562 * 7 6 5
28 28 H 1.08996 * 109.47352 * 299.99771 * 1 2 3
29 29 H 1.08999 * 109.47144 * 59.99795 * 1 2 3
30 30 H 1.08995 * 109.47253 * 179.97438 * 1 2 3
31 31 H 1.07997 * 120.03176 * 359.97124 * 4 3 2
32 32 H 1.07997 * 119.97739 * 180.29791 * 5 4 3
33 33 H 1.08001 * 119.94552 * 179.70178 * 6 5 4
34 34 H 1.09003 * 109.47240 * 29.97765 * 8 7 6
35 35 H 1.09001 * 109.47227 * 149.97786 * 8 7 6
36 36 H 0.96992 * 120.00180 * 359.97438 * 11 9 8
37 37 H 1.08994 * 109.47462 * 300.00398 * 12 11 9
38 38 H 1.09001 * 109.46867 * 60.00174 * 12 11 9
39 39 H 1.09003 * 109.47255 * 300.00285 * 13 12 11
40 40 H 1.08994 * 109.46743 * 60.00084 * 13 12 11
41 41 H 1.00901 * 111.00242 * 56.04547 * 14 13 12
42 42 H 1.09002 * 109.46930 * 299.99794 * 15 14 13
43 43 H 1.08998 * 109.47060 * 59.99871 * 15 14 13
44 44 H 0.97004 * 119.99101 * 0.02562 * 18 16 15
45 45 H 0.97000 * 120.00148 * 179.97438 * 22 21 19
46 46 H 1.08006 * 120.02917 * 180.02562 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2110 0.0000
4 6 1.2914 2.3753 -0.0057
5 6 1.9207 3.6048 0.0006
6 6 3.3018 3.6759 0.0002
7 6 4.0559 2.5172 0.0001
8 6 5.5607 2.5983 0.0002
9 6 6.0624 2.6249 -1.4206
10 8 5.2755 2.5818 -2.3425
11 7 7.3856 2.6967 -1.6668
12 6 7.8734 2.7220 -3.0480
13 6 9.4011 2.8045 -3.0479
14 7 9.8901 2.8305 -4.4329
15 6 11.3565 2.9090 -4.4720
16 6 11.8202 2.9330 -5.9056
17 8 11.0090 2.8886 -6.8063
18 7 13.1364 3.0039 -6.1872
19 6 13.5582 3.0263 -7.4914
20 1 12.8359 2.9867 -8.2933
21 6 14.9151 3.0988 -7.7816
22 7 15.7940 3.1464 -6.8059
23 14 15.4899 3.1286 -9.5587
24 1 15.5673 4.5346 -10.0304
25 1 16.8315 2.4995 -9.6556
26 1 14.5278 2.3756 -10.4029
27 6 3.4311 1.2849 -0.0001
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 0.2128 2.3203 -0.0106
32 1 1.3339 4.5114 0.0011
33 1 3.7922 4.6381 0.0002
34 1 5.8756 3.5067 0.5138
35 1 5.9714 1.7293 0.5143
36 1 8.0149 2.7315 -0.9295
37 1 7.5589 1.8133 -3.5611
38 1 7.4623 3.5905 -3.5625
39 1 9.7160 3.7131 -2.5346
40 1 9.8118 1.9357 -2.5335
41 1 9.4731 3.5903 -4.9494
42 1 11.6852 3.8180 -3.9681
43 1 11.7804 2.0405 -3.9679
44 1 13.7852 3.0391 -5.4669
45 1 16.7413 3.1967 -7.0084
46 1 4.0206 0.3800 0.0003
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001149792352.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:56:10
Heat of formation + Delta-G solvation = -85.344774 kcal
Electronic energy + Delta-G solvation = -26497.306006 eV
Core-core repulsion = 22387.151445 eV
Total energy + Delta-G solvation = -4110.154561 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.63235 -39.75455 -38.33637 -37.77972 -36.26991 -34.35206 -33.74672 -32.99800
-31.24454 -30.86974 -29.67932 -27.99665 -27.38517 -25.82322 -23.90799 -22.90636
-22.26757 -21.76004 -20.51017 -19.28681 -18.18885 -17.90387 -17.30825 -16.69605
-16.37924 -16.18136 -16.12959 -16.05537 -15.85967 -15.29411 -14.65940 -14.49190
-14.28413 -14.15915 -13.85303 -13.79813 -13.60335 -13.38910 -13.16178 -12.82713
-12.57941 -12.37877 -12.18247 -11.91949 -11.87790 -11.52448 -11.46579 -11.42133
-11.40693 -11.17430 -11.03376 -10.39264 -10.22487 -10.12330 -9.51635 -9.24487
-9.14550 -8.50860 -8.49757 -8.13287 -7.97065 -6.42446 -3.83188 0.96101
1.16523 2.45531 2.82996 2.95783 3.17920 3.26778 3.33122 3.49905
3.89456 4.12540 4.25645 4.39284 4.44175 4.62621 4.65338 4.71594
4.74979 4.80161 4.90974 4.98256 5.01145 5.04714 5.07761 5.17482
5.21501 5.25692 5.35549 5.38508 5.69071 5.71973 5.83680 5.90931
5.94588 5.96462 6.10078 6.19151 6.24591 6.26257 6.41022 7.06030
7.09408 7.27808 7.54918 7.56594 8.03560 8.05501 8.60378 9.17298
9.53133 10.04602 10.75285
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.033448 B = 0.001345 C = 0.001327
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 836.908397 B =20808.262264 C =21089.502295
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.318 6.318
3 C 0.127 3.873
4 C -0.209 4.209
5 C -0.079 4.079
6 C -0.141 4.141
7 C -0.027 4.027
8 C -0.103 4.103
9 C 0.513 3.487
10 O -0.527 6.527
11 N -0.730 5.730
12 C 0.120 3.880
13 C 0.050 3.950
14 N -0.666 5.666
15 C 0.053 3.947
16 C 0.439 3.561
17 O -0.582 6.582
18 N -0.563 5.563
19 C -0.300 4.300
20 H 0.103 0.897
21 C 0.023 3.977
22 N -0.902 5.902
23 Si 0.930 3.070
24 H -0.278 1.278
25 H -0.284 1.284
26 H -0.269 1.269
27 C -0.136 4.136
28 H 0.054 0.946
29 H 0.055 0.945
30 H 0.099 0.901
31 H 0.126 0.874
32 H 0.125 0.875
33 H 0.122 0.878
34 H 0.106 0.894
35 H 0.106 0.894
36 H 0.400 0.600
37 H 0.080 0.920
38 H 0.068 0.932
39 H 0.032 0.968
40 H 0.077 0.923
41 H 0.352 0.648
42 H 0.045 0.955
43 H 0.087 0.913
44 H 0.392 0.608
45 H 0.271 0.729
46 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.308 -0.589 22.709 33.270
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.232 6.232
3 C 0.082 3.918
4 C -0.227 4.227
5 C -0.098 4.098
6 C -0.160 4.160
7 C -0.028 4.028
8 C -0.143 4.143
9 C 0.298 3.702
10 O -0.402 6.402
11 N -0.383 5.383
12 C -0.004 4.004
13 C -0.080 4.080
14 N -0.299 5.299
15 C -0.080 4.080
16 C 0.225 3.775
17 O -0.466 6.466
18 N -0.200 5.200
19 C -0.430 4.430
20 H 0.121 0.879
21 C -0.179 4.179
22 N -0.543 5.543
23 Si 0.757 3.243
24 H -0.204 1.204
25 H -0.209 1.209
26 H -0.194 1.194
27 C -0.155 4.155
28 H 0.073 0.927
29 H 0.074 0.926
30 H 0.118 0.882
31 H 0.144 0.856
32 H 0.143 0.857
33 H 0.140 0.860
34 H 0.124 0.876
35 H 0.124 0.876
36 H 0.234 0.766
37 H 0.098 0.902
38 H 0.086 0.914
39 H 0.051 0.949
40 H 0.095 0.905
41 H 0.172 0.828
42 H 0.063 0.937
43 H 0.105 0.895
44 H 0.225 0.775
45 H 0.081 0.919
46 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -25.144 -1.524 21.311 32.996
hybrid contribution 1.079 1.128 0.205 1.574
sum -24.066 -0.396 21.516 32.284
Atomic orbital electron populations
1.23052 0.78381 1.03967 1.01330 1.86075 1.21394 1.26954 1.88768
1.18937 0.92214 0.84175 0.96505 1.21222 0.99959 0.92468 1.09080
1.20879 0.94480 0.96992 0.97406 1.20893 0.93853 0.97803 1.03422
1.19008 0.93634 0.92611 0.97526 1.20689 0.92952 1.05592 0.95030
1.20449 0.82110 0.76456 0.91162 1.90770 1.55101 1.48129 1.46174
1.45916 1.07205 1.75995 1.09214 1.21279 0.93512 1.03479 0.82110
1.22078 0.93697 1.00882 0.91368 1.59922 1.06025 1.53138 1.10833
1.21666 0.88152 1.01115 0.97064 1.19783 0.83451 0.84600 0.89684
1.90536 1.53273 1.55271 1.47511 1.41852 1.05150 1.64175 1.08791
1.19717 0.91816 1.47423 0.83994 0.87883 1.25257 0.95582 0.97268
0.99774 1.69609 1.02310 1.50473 1.31950 0.85852 0.77947 0.78454
0.82013 1.20421 1.20915 1.19374 1.20210 0.91454 0.98021 1.05782
0.92697 0.92597 0.88222 0.85586 0.85718 0.85961 0.87556 0.87586
0.76627 0.90203 0.91387 0.94947 0.90461 0.82795 0.93720 0.89462
0.77459 0.91873 0.85314
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.15 9.81 101.05 0.99 1.14 16
2 O -0.32 -3.07 10.50 -19.44 -0.20 -3.28 16
3 C 0.13 1.28 6.69 -39.22 -0.26 1.02 16
4 C -0.21 -1.80 9.04 -39.43 -0.36 -2.16 16
5 C -0.08 -0.66 10.04 -39.60 -0.40 -1.06 16
6 C -0.14 -1.25 9.70 -39.56 -0.38 -1.63 16
7 C -0.03 -0.25 4.37 -104.65 -0.46 -0.71 16
8 C -0.10 -0.70 5.83 -29.04 -0.17 -0.87 16
9 C 0.51 5.35 7.82 -10.98 -0.09 5.27 16
10 O -0.53 -8.09 16.03 5.56 0.09 -8.00 16
11 N -0.73 -6.33 5.56 -60.30 -0.33 -6.66 16
12 C 0.12 1.35 5.93 -4.04 -0.02 1.33 16
13 C 0.05 0.55 5.80 -3.82 -0.02 0.53 16
14 N -0.67 -10.49 6.12 -115.06 -0.70 -11.20 16
15 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16
16 C 0.44 10.35 7.82 -10.98 -0.09 10.26 16
17 O -0.58 -15.92 15.78 5.55 0.09 -15.83 16
18 N -0.56 -14.21 5.29 -10.97 -0.06 -14.27 16
19 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16
20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16
21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16
22 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16
23 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16
24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16
25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16
27 C -0.14 -1.38 9.64 -39.44 -0.38 -1.76 16
28 H 0.05 0.23 7.67 -51.93 -0.40 -0.17 16
29 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16
30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16
31 H 0.13 0.80 6.30 -52.49 -0.33 0.47 16
32 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16
33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16
34 H 0.11 0.45 8.08 -51.93 -0.42 0.03 16
35 H 0.11 0.48 8.08 -51.93 -0.42 0.07 16
36 H 0.40 2.12 8.47 -40.82 -0.35 1.78 16
37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16
38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
39 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16
40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
41 H 0.35 5.78 8.43 -39.29 -0.33 5.45 16
42 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16
43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16
44 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16
45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16
46 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16
LS Contribution 396.27 15.07 5.97 5.97
Total: -1.00 -36.21 396.27 -8.06 -44.27
By element:
Atomic # 1 Polarization: 19.13 SS G_CDS: -6.70 Total: 12.43 kcal
Atomic # 6 Polarization: 6.13 SS G_CDS: -1.90 Total: 4.23 kcal
Atomic # 7 Polarization: -55.46 SS G_CDS: -0.37 Total: -55.83 kcal
Atomic # 8 Polarization: -27.08 SS G_CDS: -0.03 Total: -27.11 kcal
Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -36.21 -8.06 -44.27 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001149792352.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.071 kcal
(2) G-P(sol) polarization free energy of solvation -36.212 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.283 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.274 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.345 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds