Wall clock time and date at job start Tue Mar 31 2020 18:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.21276 * 119.99988 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00062 * 179.97438 * 10 9 8 13 13 C 1.46493 * 119.99780 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47036 * 179.97438 * 13 12 10 15 15 N 1.46900 * 109.47107 * 179.97438 * 14 13 12 16 16 C 1.46898 * 110.99876 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47491 * 180.02562 * 16 15 14 18 18 O 1.21293 * 119.99417 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00416 * 179.97438 * 17 16 15 20 20 C 1.37091 * 120.00301 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99836 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00158 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00021 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99843 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47102 * 89.99958 * 24 22 20 26 26 H 1.48497 * 109.47235 * 209.99580 * 24 22 20 27 27 H 1.48498 * 109.47181 * 330.00216 * 24 22 20 28 28 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 29 29 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 31 31 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 32 32 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 33 33 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 34 34 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 36 36 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 37 37 H 0.96996 * 119.99860 * 359.97438 * 12 10 9 38 38 H 1.08995 * 109.47471 * 300.00256 * 13 12 10 39 39 H 1.09004 * 109.47342 * 60.00763 * 13 12 10 40 40 H 1.08995 * 109.47325 * 300.00499 * 14 13 12 41 41 H 1.09006 * 109.47037 * 60.00168 * 14 13 12 42 42 H 1.00897 * 110.99843 * 56.05730 * 15 14 13 43 43 H 1.09002 * 109.47458 * 300.00808 * 16 15 14 44 44 H 1.08999 * 109.47182 * 60.00009 * 16 15 14 45 45 H 0.97009 * 119.99785 * 359.97438 * 19 17 16 46 46 H 0.97006 * 119.99734 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9256 0.1486 -2.3338 12 7 5.1295 -1.5889 -1.6603 13 6 5.2943 -2.0649 -3.0359 14 6 6.1307 -3.3461 -3.0356 15 7 6.2954 -3.8237 -4.4150 16 6 7.0948 -5.0556 -4.4536 17 6 7.2426 -5.5140 -5.8815 18 8 6.7326 -4.8768 -6.7788 19 7 7.9423 -6.6313 -6.1616 20 6 8.0772 -7.0480 -7.4607 21 1 7.6231 -6.4808 -8.2596 22 6 8.7981 -8.2003 -7.7494 23 7 9.3510 -8.8903 -6.7772 24 14 8.9813 -8.7684 -9.5194 25 1 10.1980 -8.1571 -10.1122 26 1 9.1036 -10.2480 -9.5543 27 1 7.7881 -8.3518 -10.2991 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2128 2.3203 -0.0010 32 1 1.3339 4.5114 0.0026 33 1 3.7920 4.6381 -0.0024 34 1 5.1344 2.5754 -0.0023 35 1 5.2326 0.2265 0.4336 36 1 3.7469 -0.7414 0.5899 37 1 5.5282 -2.0811 -0.9257 38 1 4.3154 -2.2697 -3.4693 39 1 5.8005 -1.3012 -3.6265 40 1 7.1096 -3.1408 -2.6023 41 1 5.6249 -4.1100 -2.4449 42 1 6.7037 -3.1091 -4.9987 43 1 8.0805 -4.8625 -4.0304 44 1 6.5956 -5.8310 -3.8725 45 1 8.3510 -7.1402 -5.4440 46 1 9.8546 -9.6945 -6.9789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150169964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:14 Heat of formation + Delta-G solvation = -84.469034 kcal Electronic energy + Delta-G solvation = -26989.012374 eV Core-core repulsion = 22878.895788 eV Total energy + Delta-G solvation = -4110.116586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73897 -39.49120 -38.31015 -37.65903 -36.25232 -34.30217 -33.72403 -33.23479 -31.23618 -30.44428 -29.72088 -28.09208 -27.31465 -25.80796 -23.89855 -22.47757 -22.36326 -21.88962 -20.46959 -19.27419 -18.33916 -17.90626 -17.25819 -16.70368 -16.42870 -16.15570 -15.93892 -15.81831 -15.62707 -15.17206 -14.76434 -14.56517 -14.27595 -14.15492 -13.81356 -13.75874 -13.54059 -13.33938 -13.10665 -12.75782 -12.57930 -12.35210 -12.22350 -11.90072 -11.65709 -11.51347 -11.44255 -11.43214 -11.36597 -11.16293 -11.02726 -10.38867 -10.21816 -10.03488 -9.51010 -9.17348 -9.14907 -8.49496 -8.43506 -8.11560 -7.96364 -6.41830 -3.82571 0.99170 1.16717 2.57564 2.96097 2.96638 3.18327 3.27068 3.33486 3.52351 3.90382 4.13678 4.31609 4.42232 4.46201 4.61548 4.72251 4.76302 4.83000 4.89969 4.95340 4.99420 5.05712 5.14080 5.17228 5.19243 5.23294 5.26888 5.39763 5.41965 5.68604 5.73946 5.87849 5.93433 5.97676 6.00455 6.10106 6.22553 6.23306 6.31370 6.46721 7.06722 7.11967 7.36849 7.55479 7.58787 8.06213 8.14065 8.61086 9.17919 9.53899 10.05414 10.75884 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030158 B = 0.001473 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.218458 B =19003.099287 C =19178.954487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.144 3.856 4 C -0.209 4.209 5 C -0.081 4.081 6 C -0.157 4.157 7 C -0.070 4.070 8 C -0.098 4.098 9 C -0.093 4.093 10 C 0.516 3.484 11 O -0.529 6.529 12 N -0.732 5.732 13 C 0.121 3.879 14 C 0.050 3.950 15 N -0.666 5.666 16 C 0.053 3.947 17 C 0.440 3.560 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.399 0.601 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.032 0.968 41 H 0.077 0.923 42 H 0.352 0.648 43 H 0.045 0.955 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 19.963 22.589 32.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.098 3.902 4 C -0.228 4.228 5 C -0.099 4.099 6 C -0.176 4.176 7 C -0.088 4.088 8 C -0.099 4.099 9 C -0.133 4.133 10 C 0.302 3.698 11 O -0.405 6.405 12 N -0.384 5.384 13 C -0.003 4.003 14 C -0.080 4.080 15 N -0.299 5.299 16 C -0.080 4.080 17 C 0.225 3.775 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.233 0.767 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.172 0.828 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.956 20.117 21.259 32.008 hybrid contribution 1.232 -0.518 0.120 1.342 sum -11.724 19.600 21.379 31.284 Atomic orbital electron populations 1.23063 0.78285 1.04088 1.01267 1.86060 1.21436 1.26808 1.88374 1.18775 0.91659 0.84331 0.95411 1.21194 0.99976 0.92377 1.09238 1.20930 0.94733 0.96907 0.97318 1.21004 0.93924 0.98316 1.04321 1.20852 0.99831 0.91040 0.97063 1.18603 0.90227 0.94599 1.06512 1.20470 1.01285 0.96510 0.95019 1.20484 0.77904 0.80242 0.91156 1.90733 1.47246 1.56224 1.46261 1.45906 1.55539 1.27414 1.09587 1.21252 1.01475 0.95177 0.82377 1.22081 0.98118 0.96091 0.91731 1.59929 1.54959 1.07193 1.07836 1.21668 0.95867 0.93191 0.97287 1.19784 0.84196 0.83875 0.89626 1.90535 1.51523 1.56969 1.47568 1.41851 1.46432 1.22486 1.09226 1.19718 1.31005 1.07730 0.84485 0.87884 1.25261 0.96640 0.96261 0.99760 1.69613 1.35006 1.17653 1.32065 0.85848 0.78881 0.77557 0.81949 1.20426 1.20922 1.19388 0.92554 0.88147 0.92724 0.85513 0.85878 0.85851 0.85457 0.88051 0.87639 0.76721 0.90326 0.91494 0.94950 0.90487 0.82819 0.93731 0.89467 0.77455 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.20 9.63 -19.42 -0.19 -3.39 16 3 C 0.14 1.51 6.66 -39.22 -0.26 1.25 16 4 C -0.21 -1.87 9.04 -39.43 -0.36 -2.22 16 5 C -0.08 -0.65 10.04 -39.60 -0.40 -1.05 16 6 C -0.16 -1.29 10.04 -39.56 -0.40 -1.68 16 7 C -0.07 -0.62 9.68 -39.61 -0.38 -1.00 16 8 C -0.10 -0.99 4.39 -104.48 -0.46 -1.45 16 9 C -0.09 -0.77 5.55 -29.04 -0.16 -0.93 16 10 C 0.52 5.98 7.82 -10.98 -0.09 5.90 16 11 O -0.53 -8.60 16.03 5.56 0.09 -8.51 16 12 N -0.73 -7.04 5.56 -60.30 -0.33 -7.38 16 13 C 0.12 1.45 5.93 -4.04 -0.02 1.42 16 14 C 0.05 0.58 5.80 -3.82 -0.02 0.56 16 15 N -0.67 -10.73 6.13 -115.05 -0.70 -11.43 16 16 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 17 C 0.44 10.44 7.82 -10.99 -0.09 10.35 16 18 O -0.58 -16.02 15.78 5.55 0.09 -15.93 16 19 N -0.56 -14.31 5.29 -10.97 -0.06 -14.36 16 20 C -0.30 -8.41 9.68 -14.94 -0.14 -8.56 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 24 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 32 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.10 0.54 8.05 -51.93 -0.42 0.12 16 36 H 0.11 0.75 7.69 -51.93 -0.40 0.35 16 37 H 0.40 2.53 8.47 -40.82 -0.35 2.18 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.35 5.90 8.43 -39.29 -0.33 5.56 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 45 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 395.07 15.07 5.95 5.95 Total: -1.00 -36.23 395.07 -8.05 -44.28 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -6.68 Total: 13.31 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -1.91 Total: 5.14 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.37 Total: -56.96 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.01 Total: -27.83 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.23 -8.05 -44.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150169964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.187 kcal (2) G-P(sol) polarization free energy of solvation -36.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds