Wall clock time and date at job start Tue Mar 31 2020 18:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.21276 * 119.99988 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00062 * 179.97438 * 10 9 8 13 13 C 1.46493 * 119.99780 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47036 * 179.97438 * 13 12 10 15 15 N 1.46900 * 109.47107 * 179.97438 * 14 13 12 16 16 C 1.46898 * 110.99876 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47491 * 180.02562 * 16 15 14 18 18 O 1.21293 * 119.99417 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00416 * 179.97438 * 17 16 15 20 20 C 1.37091 * 120.00301 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99836 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00158 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00021 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99843 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47102 * 89.99958 * 24 22 20 26 26 H 1.48497 * 109.47235 * 209.99580 * 24 22 20 27 27 H 1.48498 * 109.47181 * 330.00216 * 24 22 20 28 28 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 29 29 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 31 31 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 32 32 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 33 33 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 34 34 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 36 36 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 37 37 H 0.96996 * 119.99860 * 359.97438 * 12 10 9 38 38 H 1.08995 * 109.47471 * 300.00256 * 13 12 10 39 39 H 1.09004 * 109.47342 * 60.00763 * 13 12 10 40 40 H 1.08995 * 109.47325 * 300.00499 * 14 13 12 41 41 H 1.09006 * 109.47037 * 60.00168 * 14 13 12 42 42 H 1.00897 * 110.99843 * 56.05730 * 15 14 13 43 43 H 1.09002 * 109.47458 * 300.00808 * 16 15 14 44 44 H 1.08999 * 109.47182 * 60.00009 * 16 15 14 45 45 H 0.97009 * 119.99785 * 359.97438 * 19 17 16 46 46 H 0.97006 * 119.99734 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9256 0.1486 -2.3338 12 7 5.1295 -1.5889 -1.6603 13 6 5.2943 -2.0649 -3.0359 14 6 6.1307 -3.3461 -3.0356 15 7 6.2954 -3.8237 -4.4150 16 6 7.0948 -5.0556 -4.4536 17 6 7.2426 -5.5140 -5.8815 18 8 6.7326 -4.8768 -6.7788 19 7 7.9423 -6.6313 -6.1616 20 6 8.0772 -7.0480 -7.4607 21 1 7.6231 -6.4808 -8.2596 22 6 8.7981 -8.2003 -7.7494 23 7 9.3510 -8.8903 -6.7772 24 14 8.9813 -8.7684 -9.5194 25 1 10.1980 -8.1571 -10.1122 26 1 9.1036 -10.2480 -9.5543 27 1 7.7881 -8.3518 -10.2991 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2128 2.3203 -0.0010 32 1 1.3339 4.5114 0.0026 33 1 3.7920 4.6381 -0.0024 34 1 5.1344 2.5754 -0.0023 35 1 5.2326 0.2265 0.4336 36 1 3.7469 -0.7414 0.5899 37 1 5.5282 -2.0811 -0.9257 38 1 4.3154 -2.2697 -3.4693 39 1 5.8005 -1.3012 -3.6265 40 1 7.1096 -3.1408 -2.6023 41 1 5.6249 -4.1100 -2.4449 42 1 6.7037 -3.1091 -4.9987 43 1 8.0805 -4.8625 -4.0304 44 1 6.5956 -5.8310 -3.8725 45 1 8.3510 -7.1402 -5.4440 46 1 9.8546 -9.6945 -6.9789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150169964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:13 Heat of formation + Delta-G solvation = -113.083157 kcal Electronic energy + Delta-G solvation = -26990.253175 eV Core-core repulsion = 22878.895788 eV Total energy + Delta-G solvation = -4111.357388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.42462 -40.37798 -40.11878 -38.28782 -37.44718 -35.99123 -35.16099 -33.91534 -33.26847 -31.07341 -30.78161 -28.88893 -28.03479 -27.29813 -25.50422 -23.30741 -23.05119 -22.71634 -21.31799 -21.09782 -19.92156 -18.96925 -18.22512 -17.62758 -17.38585 -17.32046 -17.06029 -16.58895 -16.55557 -16.33791 -16.18409 -15.83882 -15.37533 -15.32219 -15.02126 -14.88604 -14.55833 -14.36368 -14.02977 -13.97246 -13.52406 -13.39344 -13.31103 -13.04322 -12.91548 -12.86015 -12.58348 -12.42575 -12.37733 -12.22937 -12.12244 -12.00476 -11.74718 -11.51165 -11.00368 -10.36906 -10.10222 -10.01724 -9.79394 -9.38077 -9.08087 -8.47001 -5.95651 0.35762 0.52568 1.38078 1.42166 1.54816 1.69891 2.04866 2.09612 2.31114 2.39528 2.84641 3.07936 3.20394 3.56953 3.69024 3.87474 3.88859 4.04812 4.10608 4.18804 4.26650 4.32080 4.35982 4.37177 4.45938 4.46955 4.51102 4.57890 4.61950 4.66358 4.70235 4.82610 4.91209 4.95776 5.11482 5.39155 5.40666 5.42014 5.49600 5.60864 5.85034 5.88726 6.07343 6.32151 6.44676 6.59685 6.60863 7.12608 7.31758 7.55979 8.11816 8.70243 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030158 B = 0.001473 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.218458 B =19003.099287 C =19178.954487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.334 6.334 3 C 0.120 3.880 4 C -0.222 4.222 5 C -0.088 4.088 6 C -0.166 4.166 7 C -0.081 4.081 8 C -0.122 4.122 9 C -0.084 4.084 10 C 0.513 3.487 11 O -0.583 6.583 12 N -0.715 5.715 13 C 0.129 3.871 14 C 0.060 3.940 15 N -0.688 5.688 16 C 0.068 3.932 17 C 0.434 3.566 18 O -0.626 6.626 19 N -0.571 5.571 20 C -0.337 4.337 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.993 3.007 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.275 1.275 28 H 0.053 0.947 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.118 0.882 37 H 0.419 0.581 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.345 0.655 43 H 0.074 0.926 44 H 0.109 0.891 45 H 0.398 0.602 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 19.939 24.424 33.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.248 6.248 3 C 0.075 3.925 4 C -0.240 4.240 5 C -0.106 4.106 6 C -0.184 4.184 7 C -0.099 4.099 8 C -0.123 4.123 9 C -0.124 4.124 10 C 0.301 3.699 11 O -0.462 6.462 12 N -0.369 5.369 13 C 0.004 3.996 14 C -0.069 4.069 15 N -0.321 5.321 16 C -0.064 4.064 17 C 0.222 3.778 18 O -0.513 6.513 19 N -0.209 5.209 20 C -0.466 4.466 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.200 1.200 28 H 0.072 0.928 29 H 0.132 0.868 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.153 0.847 36 H 0.136 0.864 37 H 0.256 0.744 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.164 0.836 43 H 0.092 0.908 44 H 0.127 0.873 45 H 0.232 0.768 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.269 20.060 23.171 33.013 hybrid contribution 0.972 -0.454 -0.417 1.151 sum -11.296 19.606 22.754 32.089 Atomic orbital electron populations 1.23270 0.76875 1.05248 1.01952 1.86011 1.23074 1.27129 1.88580 1.19104 0.92336 0.84834 0.96273 1.21482 1.00904 0.92441 1.09183 1.21292 0.95182 0.97527 0.96615 1.21361 0.94211 0.99152 1.03680 1.21181 1.00936 0.91004 0.96796 1.18946 0.90569 0.95685 1.07087 1.20504 1.02997 0.96163 0.92713 1.21132 0.76850 0.79886 0.92032 1.90709 1.49483 1.57916 1.48114 1.45731 1.54932 1.27001 1.09256 1.20992 0.99936 0.95213 0.83420 1.22067 0.99448 0.95927 0.89481 1.59897 1.54917 1.06825 1.10432 1.21525 0.98006 0.94215 0.92629 1.20945 0.82198 0.82569 0.92078 1.90504 1.52858 1.58017 1.49894 1.41908 1.47130 1.23292 1.08546 1.19668 1.32760 1.08852 0.85340 0.90475 1.26014 0.95674 0.95696 1.03709 1.69664 1.34812 1.17844 1.33592 0.84936 0.78630 0.77659 0.77151 1.19585 1.19430 1.19998 0.92825 0.86817 0.91045 0.84084 0.83611 0.83788 0.83737 0.84726 0.86420 0.74403 0.93039 0.92843 0.92272 0.88873 0.83614 0.90845 0.87286 0.76820 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -6.82 9.63 -92.39 -0.89 -7.71 16 3 C 0.12 2.50 6.66 22.51 0.15 2.65 16 4 C -0.22 -3.88 9.04 22.37 0.20 -3.68 16 5 C -0.09 -1.34 10.04 22.26 0.22 -1.12 16 6 C -0.17 -2.52 10.04 22.28 0.22 -2.30 16 7 C -0.08 -1.36 9.68 22.25 0.22 -1.15 16 8 C -0.12 -2.38 4.39 -19.77 -0.09 -2.46 16 9 C -0.08 -1.27 5.55 29.10 0.16 -1.11 16 10 C 0.51 11.56 7.82 87.65 0.69 12.24 16 11 O -0.58 -19.41 16.03 -3.02 -0.05 -19.46 16 12 N -0.72 -12.67 5.56 -463.07 -2.57 -15.24 16 13 C 0.13 3.01 5.93 86.38 0.51 3.52 16 14 C 0.06 1.25 5.80 86.30 0.50 1.75 16 15 N -0.69 -21.35 6.13 -517.92 -3.17 -24.52 16 16 C 0.07 2.25 6.17 85.56 0.53 2.78 16 17 C 0.43 20.69 7.82 87.66 0.69 21.38 16 18 O -0.63 -35.34 15.78 -3.07 -0.05 -35.39 16 19 N -0.57 -29.25 5.29 -307.00 -1.62 -30.87 16 20 C -0.34 -19.25 9.68 84.04 0.81 -18.43 16 21 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 22 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 23 N -0.92 -49.22 13.05 21.66 0.28 -48.94 16 24 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 28 H 0.05 0.69 7.66 -2.39 -0.02 0.67 16 29 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 31 H 0.14 1.85 6.30 -2.91 -0.02 1.84 16 32 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.13 1.05 8.05 -2.38 -0.02 1.03 16 36 H 0.12 1.47 7.69 -2.38 -0.02 1.45 16 37 H 0.42 4.09 8.47 -92.71 -0.79 3.31 16 38 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.35 11.49 8.43 -89.70 -0.76 10.74 16 43 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 45 H 0.40 19.08 7.90 -92.70 -0.73 18.35 16 46 H 0.28 13.93 8.31 -92.70 -0.77 13.16 16 Total: -1.00 -81.13 395.07 -0.89 -82.02 By element: Atomic # 1 Polarization: 40.92 SS G_CDS: -1.24 Total: 39.67 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 6.39 Total: 15.33 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -7.09 Total: -119.57 kcal Atomic # 8 Polarization: -61.57 SS G_CDS: -0.99 Total: -62.56 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -81.13 -0.89 -82.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150169964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.060 kcal (2) G-P(sol) polarization free energy of solvation -81.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds