Wall clock time and date at job start Tue Mar 31 2020 18:35:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.36940 * 120.00025 * 2 1
4 4 H 1.07994 * 120.00130 * 38.64422 * 3 2 1
5 5 C 1.38807 * 119.99704 * 218.65176 * 3 2 1
6 6 N 1.31618 * 119.99638 * 199.77951 * 5 3 2
7 7 Si 1.86798 * 120.00390 * 19.77795 * 5 3 2
8 8 H 1.48503 * 109.47257 * 264.52392 * 7 5 3
9 9 H 1.48501 * 109.47271 * 24.52671 * 7 5 3
10 10 H 1.48501 * 109.47206 * 144.52627 * 7 5 3
11 11 C 1.46498 * 119.99953 * 180.02562 * 2 1 3
12 12 C 1.52997 * 109.47204 * 264.06282 * 11 2 1
13 13 H 1.08997 * 109.58788 * 297.85036 * 12 11 2
14 14 C 1.53192 * 109.58581 * 58.13098 * 12 11 2
15 15 C 1.53037 * 109.31384 * 174.42210 * 14 12 11
16 16 C 1.53042 * 109.53918 * 298.63762 * 15 14 12
17 17 C 1.53190 * 109.31411 * 61.36320 * 16 15 14
18 18 N 1.46927 * 109.58744 * 177.56323 * 12 11 2
19 19 C 1.34768 * 120.63180 * 6.60251 * 18 12 11
20 20 O 1.21617 * 120.00142 * 6.60100 * 19 18 12
21 21 C 1.47287 * 120.00294 * 186.59838 * 19 18 12
22 22 C 1.36568 * 125.80908 * 187.24833 * 21 19 18
23 23 C 1.40064 * 106.92985 * 179.85087 * 22 21 19
24 24 C 1.36567 * 106.92285 * 0.40732 * 23 22 21
25 25 C 1.47299 * 125.80701 * 179.71089 * 24 23 22
26 26 N 1.34769 * 120.00225 * 180.02562 * 25 24 23
27 27 O 1.21607 * 119.99631 * 0.02562 * 25 24 23
28 28 O 1.34548 * 108.38894 * 359.74737 * 24 23 22
29 29 H 1.08998 * 109.47440 * 84.82156 * 1 2 3
30 30 H 1.09003 * 109.47139 * 204.82124 * 1 2 3
31 31 H 1.09004 * 109.47300 * 324.82150 * 1 2 3
32 32 H 0.97002 * 120.00123 * 180.02562 * 6 5 3
33 33 H 1.09008 * 109.47152 * 24.06603 * 11 2 1
34 34 H 1.08998 * 109.47082 * 144.06392 * 11 2 1
35 35 H 1.09003 * 109.49706 * 294.37318 * 14 12 11
36 36 H 1.09002 * 109.50227 * 54.43777 * 14 12 11
37 37 H 1.09005 * 109.45972 * 58.65270 * 15 14 12
38 38 H 1.09001 * 109.46446 * 178.62706 * 15 14 12
39 39 H 1.09000 * 109.49438 * 181.31638 * 16 15 14
40 40 H 1.09002 * 109.49243 * 301.41035 * 16 15 14
41 41 H 1.08993 * 109.58596 * 65.15371 * 17 16 15
42 42 H 1.08997 * 109.58739 * 185.43892 * 17 16 15
43 43 H 1.08007 * 126.53721 * 0.02562 * 22 21 19
44 44 H 1.07999 * 126.53678 * 180.13396 * 23 22 21
45 45 H 0.97003 * 120.00013 * 0.02562 * 26 25 24
46 46 H 0.96999 * 120.00364 * 180.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 1.7871 2.0188 0.5840
5 6 3.3097 1.3175 -0.7508
6 7 4.1701 2.2733 -0.4706
7 14 3.6498 0.1381 -2.1589
8 1 4.5195 -0.9664 -1.6804
9 1 2.3675 -0.4215 -2.6566
10 1 4.3329 0.8647 -3.2592
11 6 2.1975 -1.2687 -0.0006
12 6 2.5817 -1.6364 1.4340
13 1 3.2437 -0.8728 1.8421
14 6 1.3184 -1.7343 2.2950
15 6 1.6947 -2.2369 3.6906
16 6 2.3147 -3.6319 3.5823
17 6 3.5892 -3.5556 2.7360
18 7 3.2653 -2.9369 1.4429
19 6 3.5857 -3.5522 0.2874
20 8 3.4191 -2.9800 -0.7727
21 6 4.1379 -4.9175 0.3084
22 6 4.6306 -5.5968 -0.7690
23 6 5.0515 -6.8491 -0.3039
24 6 4.7894 -6.8842 1.0360
25 6 5.0636 -8.0157 1.9384
26 7 4.7556 -7.9237 3.2472
27 8 5.5678 -9.0327 1.5023
28 8 4.2374 -5.7098 1.3914
29 1 -0.3634 0.0928 -1.0234
30 1 -0.3633 -0.9328 0.4314
31 1 -0.3634 0.8400 0.5921
32 1 4.9806 2.3656 -0.9955
33 1 1.5665 -2.0524 -0.4200
34 1 3.0997 -1.1671 -0.6036
35 1 0.8556 -0.7506 2.3750
36 1 0.6169 -2.4298 1.8342
37 1 2.4147 -1.5535 4.1408
38 1 0.8009 -2.2842 4.3128
39 1 2.5609 -3.9988 4.5787
40 1 1.6041 -4.3100 3.1097
41 1 4.3346 -2.9502 3.2517
42 1 3.9817 -4.5596 2.5751
43 1 4.6876 -5.2361 -1.7854
44 1 5.4944 -7.6383 -0.8933
45 1 4.3531 -7.1126 3.5949
46 1 4.9365 -8.6687 3.8415
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001158206826.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:35:19
Heat of formation + Delta-G solvation = -26.253806 kcal
Electronic energy + Delta-G solvation = -30683.308416 eV
Core-core repulsion = 26575.716231 eV
Total energy + Delta-G solvation = -4107.592185 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-44.08652 -41.55701 -40.35481 -38.69898 -37.49277 -35.06250 -34.46525 -33.97373
-33.77712 -32.56006 -31.10474 -28.74329 -27.75234 -26.34277 -25.24989 -24.03480
-23.24502 -22.48251 -22.25068 -21.60489 -20.72785 -19.41080 -19.08445 -18.15042
-17.96262 -17.79818 -17.45970 -17.16153 -16.36656 -16.03714 -15.66779 -15.57303
-15.49601 -15.22136 -15.19966 -14.78437 -14.69045 -14.51489 -14.32602 -14.20149
-14.10664 -13.87263 -13.70703 -13.13621 -12.99088 -12.70885 -12.46890 -12.15884
-11.94657 -11.86604 -11.81222 -11.63781 -11.55550 -11.41677 -11.25150 -10.90750
-10.88103 -10.48275 -10.04780 -9.64697 -8.71978 -8.23295 -5.62899 -0.57316
0.72893 1.01989 1.34666 1.41952 1.52598 1.78392 1.92560 1.95312
2.35863 2.40599 3.03992 3.23331 3.49153 3.61538 3.79506 3.88688
3.90828 3.98736 4.08590 4.20989 4.31854 4.33645 4.46434 4.52719
4.65377 4.68739 4.73977 4.82834 4.91951 5.01280 5.02749 5.04782
5.09030 5.12144 5.17683 5.23213 5.26863 5.38329 5.47482 5.59355
5.71228 5.92159 6.14073 6.18388 6.25392 6.81259 7.01651 7.03603
7.62156 8.05283 8.94937
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.015358 B = 0.004048 C = 0.003470
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1822.758568 B = 6915.537194 C = 8066.827288
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.122 3.878
2 N -0.626 5.626
3 C -0.253 4.253
4 H 0.053 0.947
5 C -0.008 4.008
6 N -0.944 5.944
7 Si 0.941 3.059
8 H -0.272 1.272
9 H -0.280 1.280
10 H -0.316 1.316
11 C 0.144 3.856
12 C 0.133 3.867
13 H 0.051 0.949
14 C -0.111 4.111
15 C -0.118 4.118
16 C -0.122 4.122
17 C 0.083 3.917
18 N -0.593 5.593
19 C 0.581 3.419
20 O -0.542 6.542
21 C -0.042 4.042
22 C -0.136 4.136
23 C -0.126 4.126
24 C -0.061 4.061
25 C 0.614 3.386
26 N -0.815 5.815
27 O -0.553 6.553
28 O -0.133 6.133
29 H 0.005 0.995
30 H 0.063 0.937
31 H 0.044 0.956
32 H 0.261 0.739
33 H 0.048 0.952
34 H 0.058 0.942
35 H 0.069 0.931
36 H 0.063 0.937
37 H 0.059 0.941
38 H 0.086 0.914
39 H 0.113 0.887
40 H 0.070 0.930
41 H 0.077 0.923
42 H 0.118 0.882
43 H 0.169 0.831
44 H 0.183 0.817
45 H 0.421 0.579
46 H 0.423 0.577
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.972 -22.469 12.957 26.013
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.022 4.022
2 N -0.352 5.352
3 C -0.383 4.383
4 H 0.070 0.930
5 C -0.205 4.205
6 N -0.588 5.588
7 Si 0.773 3.227
8 H -0.199 1.199
9 H -0.205 1.205
10 H -0.246 1.246
11 C 0.019 3.981
12 C 0.029 3.971
13 H 0.070 0.930
14 C -0.149 4.149
15 C -0.156 4.156
16 C -0.159 4.159
17 C -0.037 4.037
18 N -0.324 5.324
19 C 0.368 3.632
20 O -0.422 6.422
21 C -0.095 4.095
22 C -0.157 4.157
23 C -0.146 4.146
24 C -0.115 4.115
25 C 0.397 3.603
26 N -0.380 5.380
27 O -0.433 6.433
28 O -0.030 6.030
29 H 0.023 0.977
30 H 0.082 0.918
31 H 0.062 0.938
32 H 0.070 0.930
33 H 0.066 0.934
34 H 0.075 0.925
35 H 0.087 0.913
36 H 0.082 0.918
37 H 0.078 0.922
38 H 0.104 0.896
39 H 0.131 0.869
40 H 0.089 0.911
41 H 0.095 0.905
42 H 0.135 0.865
43 H 0.186 0.814
44 H 0.201 0.799
45 H 0.252 0.748
46 H 0.258 0.742
Dipole moment (debyes) X Y Z Total
from point charges -1.754 -22.558 12.300 25.753
hybrid contribution 0.450 0.380 -0.993 1.155
sum -1.304 -22.178 11.307 24.928
Atomic orbital electron populations
1.21246 0.82491 1.00386 0.98091 1.44424 1.02316 1.01617 1.86806
1.18715 1.06095 0.91693 1.21799 0.92962 1.25901 0.97575 0.97716
0.99318 1.69937 1.10891 1.36635 1.41356 0.85924 0.77995 0.78163
0.80621 1.19881 1.20513 1.24563 1.21749 0.96430 0.86220 0.93657
1.21919 0.94178 0.81878 0.99141 0.93045 1.21802 0.95333 1.01843
0.95931 1.21561 1.01745 0.96947 0.95337 1.21895 0.95722 0.97117
1.01200 1.22615 0.99151 0.99797 0.82174 1.48333 1.56803 1.20792
1.06514 1.17360 0.78286 0.83007 0.84503 1.90987 1.55173 1.63633
1.32387 1.22257 1.08241 0.92603 0.86430 1.22166 0.99291 0.93830
1.00408 1.22163 1.00946 0.98085 0.93448 1.22685 1.05499 0.87325
0.95965 1.16520 0.77684 0.83460 0.82649 1.43518 1.63758 1.23051
1.07645 1.90920 1.45654 1.29993 1.76729 1.84166 1.63015 1.22049
1.33762 0.97695 0.91847 0.93764 0.92960 0.93371 0.92472 0.91250
0.91828 0.92217 0.89574 0.86912 0.91135 0.90485 0.86493 0.81362
0.79918 0.74764 0.74248
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.12 4.86 9.60 127.77 1.23 6.08 16
2 N -0.63 -30.59 2.05 -726.94 -1.49 -32.08 16
3 C -0.25 -14.67 9.92 84.03 0.83 -13.84 16
4 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16
5 C -0.01 -0.50 5.36 84.86 0.45 -0.04 16
6 N -0.94 -60.41 13.97 21.65 0.30 -60.11 16
7 Si 0.94 52.17 24.68 68.60 1.69 53.87 16
8 H -0.27 -15.07 6.04 99.48 0.60 -14.47 16
9 H -0.28 -15.58 7.11 99.48 0.71 -14.87 16
10 H -0.32 -17.53 7.11 99.48 0.71 -16.82 16
11 C 0.14 6.60 2.58 86.38 0.22 6.83 16
12 C 0.13 4.99 3.18 44.97 0.14 5.13 16
13 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16
14 C -0.11 -3.21 4.13 30.67 0.13 -3.08 16
15 C -0.12 -2.37 5.88 30.62 0.18 -2.19 16
16 C -0.12 -1.80 6.08 30.67 0.19 -1.61 16
17 C 0.08 1.65 6.32 86.35 0.55 2.20 16
18 N -0.59 -18.38 2.98 -798.97 -2.38 -20.76 16
19 C 0.58 19.94 7.50 86.62 0.65 20.59 16
20 O -0.54 -23.52 11.53 -4.08 -0.05 -23.56 16
21 C -0.04 -1.10 6.83 24.26 0.17 -0.94 16
22 C -0.14 -3.32 10.60 22.32 0.24 -3.09 16
23 C -0.13 -2.55 10.60 22.32 0.24 -2.31 16
24 C -0.06 -1.16 7.14 24.26 0.17 -0.99 16
25 C 0.61 10.26 8.08 86.63 0.70 10.96 16
26 N -0.82 -6.01 8.87 -175.99 -1.56 -7.58 16
27 O -0.55 -13.15 17.70 -4.05 -0.07 -13.22 16
28 O -0.13 -2.57 6.89 -7.32 -0.05 -2.62 16
29 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16
30 H 0.06 2.09 6.91 -2.39 -0.02 2.07 16
31 H 0.04 1.68 8.08 -2.38 -0.02 1.66 16
32 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16
33 H 0.05 2.16 7.11 -2.38 -0.02 2.14 16
34 H 0.06 3.00 1.32 -2.39 0.00 3.00 16
35 H 0.07 2.25 7.00 -2.39 -0.02 2.24 16
36 H 0.06 1.75 7.89 -2.39 -0.02 1.73 16
37 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16
38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16
39 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16
40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16
41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16
42 H 0.12 1.90 3.83 -48.35 -0.19 1.72 16
43 H 0.17 4.06 8.06 -2.91 -0.02 4.04 16
44 H 0.18 3.05 8.06 -2.91 -0.02 3.02 16
45 H 0.42 1.21 8.59 -92.71 -0.80 0.42 16
46 H 0.42 1.57 8.93 -92.71 -0.83 0.74 16
Total: -1.00 -80.51 361.86 1.61 -78.90
By element:
Atomic # 1 Polarization: 4.33 SS G_CDS: -0.86 Total: 3.46 kcal
Atomic # 6 Polarization: 17.62 SS G_CDS: 6.08 Total: 23.70 kcal
Atomic # 7 Polarization: -115.40 SS G_CDS: -5.13 Total: -120.52 kcal
Atomic # 8 Polarization: -39.24 SS G_CDS: -0.17 Total: -39.41 kcal
Atomic # 14 Polarization: 52.17 SS G_CDS: 1.69 Total: 53.87 kcal
Total: -80.51 1.61 -78.90 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001158206826.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.646 kcal
(2) G-P(sol) polarization free energy of solvation -80.512 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.866 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.900 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.254 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds