Wall clock time and date at job start Tue Mar 31 2020 19:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36016 * 116.99932 * 2 1 4 4 C 1.35850 * 120.31321 * 359.97438 * 3 2 1 5 5 N 1.35442 * 120.77594 * 180.02562 * 4 3 2 6 6 H 0.96998 * 119.29572 * 180.02562 * 5 4 3 7 7 C 1.36432 * 121.41081 * 0.02562 * 5 4 3 8 8 C 1.48064 * 119.72078 * 179.97438 * 7 5 4 9 9 O 1.21513 * 120.00601 * 180.02562 * 8 7 5 10 10 N 1.34784 * 120.00025 * 359.72526 * 8 7 5 11 11 C 1.46498 * 120.00122 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46999 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46971 * 175.45706 * 12 11 10 14 14 C 1.53007 * 115.55210 * 279.32846 * 13 12 11 15 15 N 1.46508 * 109.46918 * 294.94978 * 14 13 12 16 16 C 1.36935 * 119.99857 * 174.36633 * 15 14 13 17 17 H 1.08001 * 120.00051 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99671 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00193 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99674 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47419 * 60.00041 * 20 18 16 22 22 H 1.48499 * 109.47200 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47235 * 300.00111 * 20 18 16 24 24 C 1.53000 * 117.49951 * 133.62098 * 13 12 11 25 25 C 1.52996 * 59.99969 * 252.50884 * 24 13 12 26 26 C 1.36180 * 120.56142 * 0.25341 * 7 5 4 27 27 C 1.41572 * 120.31276 * 180.02562 * 3 2 1 28 28 O 1.22264 * 120.65555 * 359.97438 * 27 3 2 29 29 H 1.08996 * 109.46868 * 60.00292 * 1 2 3 30 30 H 1.08998 * 109.46592 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.46867 * 300.00031 * 1 2 3 32 32 H 1.07994 * 119.61154 * 0.02562 * 4 3 2 33 33 H 0.96997 * 119.99640 * 359.97438 * 10 8 7 34 34 H 1.08998 * 109.46973 * 300.00259 * 11 10 8 35 35 H 1.09000 * 109.47206 * 60.00224 * 11 10 8 36 36 H 1.08995 * 109.47359 * 295.45581 * 12 11 10 37 37 H 1.08999 * 109.46947 * 55.46050 * 12 11 10 38 38 H 1.08993 * 109.47115 * 54.94622 * 14 13 12 39 39 H 1.08994 * 109.47279 * 174.95716 * 14 13 12 40 40 H 0.96995 * 119.99749 * 354.37462 * 15 14 13 41 41 H 0.97002 * 120.00067 * 179.97438 * 19 18 16 42 42 H 1.09002 * 117.49638 * 359.97438 * 24 13 12 43 43 H 1.09005 * 117.50117 * 145.01997 * 24 13 12 44 44 H 1.09008 * 117.49851 * 252.50897 * 25 24 13 45 45 H 1.09002 * 117.50223 * 107.48711 * 25 24 13 46 46 H 1.07998 * 120.40462 * 179.72239 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3128 2.3553 -0.0005 5 7 1.9179 3.5670 -0.0010 6 1 1.3732 4.3696 -0.0010 7 6 3.2773 3.6829 -0.0016 8 6 3.8995 5.0265 -0.0027 9 8 5.1097 5.1358 -0.0037 10 7 3.1234 6.1285 -0.0088 11 6 3.7390 7.4579 -0.0105 12 6 2.6443 8.5267 -0.0183 13 6 3.2835 9.9122 0.0942 14 6 3.6812 10.3428 1.5075 15 7 2.4783 10.4829 2.3320 16 6 2.5927 10.7491 3.6703 17 1 3.5697 10.8560 4.1180 18 6 1.4529 10.8824 4.4513 19 7 0.2623 10.7525 3.9056 20 14 1.6090 11.2461 6.2769 21 1 2.3258 12.5328 6.4658 22 1 0.2554 11.3398 6.8805 23 1 2.3698 10.1543 6.9359 24 6 2.7882 10.9986 -0.8626 25 6 4.1717 10.3764 -1.0619 26 6 4.0669 2.5734 -0.0068 27 6 3.4598 1.2937 -0.0005 28 8 4.1430 0.2798 -0.0006 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2344 2.2973 -0.0005 33 1 2.1574 6.0413 -0.0128 34 1 4.3547 7.5743 0.8813 35 1 4.3611 7.5691 -0.8986 36 1 2.0795 8.4616 -0.9483 37 1 1.9739 8.3663 0.8260 38 1 4.3363 9.5900 1.9458 39 1 4.2042 11.2980 1.4627 40 1 1.6009 10.3871 1.9298 41 1 -0.5342 10.8454 4.4515 42 1 2.0072 10.7261 -1.5725 43 1 2.7454 12.0203 -0.4853 44 1 5.0392 10.9889 -0.8156 45 1 4.3007 9.6947 -1.9026 46 1 5.1427 2.6681 -0.0117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166174050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:40 Heat of formation + Delta-G solvation = -30.652266 kcal Electronic energy + Delta-G solvation = -28022.065304 eV Core-core repulsion = 23914.282388 eV Total energy + Delta-G solvation = -4107.782916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.74389 -40.02954 -38.58301 -38.22381 -37.87715 -35.32534 -34.01260 -31.94746 -31.41149 -30.85576 -29.97014 -27.99225 -26.14704 -25.11537 -23.62925 -23.20625 -22.82683 -21.89811 -21.16393 -20.16731 -18.86589 -18.24471 -17.89119 -17.15187 -16.55850 -16.48025 -16.19951 -15.91921 -15.55610 -15.25398 -14.84200 -14.79738 -14.63794 -14.45092 -14.27344 -13.85924 -13.61668 -13.32699 -13.19534 -13.09020 -12.80002 -12.37251 -12.12051 -11.93555 -11.80173 -11.63940 -11.26312 -11.07240 -10.91022 -10.82461 -10.53567 -10.23817 -10.00700 -9.82252 -9.79910 -9.75114 -9.44849 -9.40483 -8.92949 -8.01026 -6.99076 -5.84437 -3.12366 0.34013 0.84262 2.18668 2.49034 2.52380 2.88339 3.39021 3.40895 3.43711 3.44466 3.91697 3.98846 4.13543 4.29422 4.54416 4.56380 4.71370 4.73087 4.83948 4.92305 4.99475 5.07402 5.14546 5.16154 5.34789 5.41548 5.46521 5.52111 5.56302 5.80384 5.80691 5.87136 6.02313 6.06447 6.12506 6.20592 6.29872 6.30854 6.35704 6.38640 6.65286 6.73726 6.82833 6.98848 7.62522 7.63258 7.73424 8.34879 9.46781 10.03979 10.39732 11.38264 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.002450 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.726293 B =11425.253897 C =12845.394973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.288 6.288 3 C -0.032 4.032 4 C 0.029 3.971 5 N -0.563 5.563 6 H 0.420 0.580 7 C 0.125 3.875 8 C 0.556 3.444 9 O -0.501 6.501 10 N -0.718 5.718 11 C 0.122 3.878 12 C -0.092 4.092 13 C -0.120 4.120 14 C 0.187 3.813 15 N -0.727 5.727 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.013 4.013 19 N -0.935 5.935 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.163 4.163 25 C -0.177 4.177 26 C -0.211 4.211 27 C 0.400 3.600 28 O -0.495 6.495 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.171 0.829 33 H 0.395 0.605 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.027 0.973 39 H 0.018 0.982 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 -13.207 -13.691 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.200 6.200 3 C -0.083 4.083 4 C -0.098 4.098 5 N -0.177 5.177 6 H 0.257 0.743 7 C 0.013 3.987 8 C 0.339 3.661 9 O -0.375 6.375 10 N -0.370 5.370 11 C 0.000 4.000 12 C -0.130 4.130 13 C -0.121 4.121 14 C 0.059 3.941 15 N -0.372 5.372 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.201 4.201 25 C -0.215 4.215 26 C -0.238 4.238 27 C 0.290 3.710 28 O -0.379 6.379 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.188 0.812 33 H 0.230 0.770 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.045 0.955 39 H 0.036 0.964 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.992 -13.852 -13.516 19.379 hybrid contribution -1.556 0.816 0.970 2.007 sum -2.548 -13.036 -12.546 18.271 Atomic orbital electron populations 1.23152 0.79002 1.04624 1.01029 1.86285 1.20453 1.24232 1.88984 1.20428 0.94804 0.84733 1.08381 1.21655 0.98872 0.84059 1.05204 1.40694 1.05049 1.08577 1.63385 0.74254 1.20395 0.82867 0.95690 0.99774 1.17879 0.87153 0.82913 0.78137 1.90874 1.12848 1.85717 1.48018 1.46002 1.09804 1.06725 1.74497 1.21547 0.96334 0.78773 1.03319 1.21271 0.97032 0.91779 1.02901 1.21545 1.03389 0.93966 0.93221 1.20197 0.90641 0.96948 0.86307 1.42277 1.02917 1.86163 1.05801 1.19192 0.92624 1.40392 0.84787 0.91291 1.24705 0.95239 1.02833 0.98096 1.69641 0.96639 1.57014 1.35045 0.86285 0.76494 0.78236 0.85291 1.21256 1.21698 1.21261 1.22971 0.96653 0.98608 1.01829 1.22992 0.94724 1.03978 0.99779 1.22500 1.02385 0.90382 1.08517 1.16803 0.86152 0.89800 0.78287 1.90865 1.65713 1.37524 1.43794 0.92699 0.87834 0.92579 0.81178 0.77025 0.90115 0.90921 0.91793 0.89309 0.95509 0.96446 0.78210 0.93526 0.89307 0.88515 0.88822 0.89205 0.81258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.29 -3.11 10.33 -35.62 -0.37 -3.48 16 3 C -0.03 -0.34 6.71 -39.17 -0.26 -0.60 16 4 C 0.03 0.19 10.22 -16.81 -0.17 0.01 16 5 N -0.56 -3.41 5.26 -9.58 -0.05 -3.46 16 6 H 0.42 1.21 7.00 -40.82 -0.29 0.92 16 7 C 0.13 1.19 6.77 -82.53 -0.56 0.63 16 8 C 0.56 6.14 7.80 -12.23 -0.10 6.05 16 9 O -0.50 -7.44 16.27 5.35 0.09 -7.35 16 10 N -0.72 -6.53 5.55 -61.18 -0.34 -6.87 16 11 C 0.12 1.37 5.51 -4.04 -0.02 1.35 16 12 C -0.09 -1.09 5.24 -26.73 -0.14 -1.23 16 13 C -0.12 -1.68 1.52 -154.51 -0.23 -1.92 16 14 C 0.19 3.48 6.10 -4.03 -0.02 3.45 16 15 N -0.73 -17.07 5.30 -59.90 -0.32 -17.39 16 16 C -0.24 -6.39 9.99 -15.06 -0.15 -6.54 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -26.87 13.06 55.49 0.72 -26.15 16 20 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 C -0.16 -2.13 9.90 -26.73 -0.26 -2.40 16 25 C -0.18 -2.07 9.57 -26.73 -0.26 -2.33 16 26 C -0.21 -2.50 9.53 -39.03 -0.37 -2.87 16 27 C 0.40 5.48 6.78 -37.02 -0.25 5.23 16 28 O -0.50 -8.78 17.71 -11.15 -0.20 -8.98 16 29 H 0.05 0.18 7.66 -51.93 -0.40 -0.22 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 32 H 0.17 0.45 6.21 -52.49 -0.33 0.12 16 33 H 0.40 2.32 6.68 -40.82 -0.27 2.05 16 34 H 0.08 1.10 7.69 -51.93 -0.40 0.70 16 35 H 0.07 0.79 7.80 -51.93 -0.41 0.39 16 36 H 0.06 0.62 7.94 -51.93 -0.41 0.21 16 37 H 0.09 1.24 7.64 -51.93 -0.40 0.85 16 38 H 0.03 0.51 7.69 -51.93 -0.40 0.12 16 39 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 40 H 0.38 9.40 7.46 -40.82 -0.30 9.10 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 43 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 45 H 0.09 0.90 7.98 -51.93 -0.41 0.49 16 46 H 0.17 2.10 7.57 -52.49 -0.40 1.70 16 LS Contribution 389.01 15.07 5.86 5.86 Total: -1.00 -36.47 389.01 -7.99 -44.46 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.46 Total: 7.14 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.91 Total: -0.54 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.02 Total: -53.87 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.48 Total: -19.81 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.47 -7.99 -44.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166174050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.810 kcal (2) G-P(sol) polarization free energy of solvation -36.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds