Wall clock time and date at job start Tue Mar 31 2020 19:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36016 * 116.99932 * 2 1 4 4 C 1.35850 * 120.31321 * 359.97438 * 3 2 1 5 5 N 1.35442 * 120.77594 * 180.02562 * 4 3 2 6 6 H 0.96998 * 119.29572 * 180.02562 * 5 4 3 7 7 C 1.36432 * 121.41081 * 0.02562 * 5 4 3 8 8 C 1.48064 * 119.72078 * 179.97438 * 7 5 4 9 9 O 1.21513 * 120.00601 * 180.02562 * 8 7 5 10 10 N 1.34784 * 120.00025 * 359.72526 * 8 7 5 11 11 C 1.46498 * 120.00122 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46999 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46971 * 175.45706 * 12 11 10 14 14 C 1.53007 * 115.55210 * 279.32846 * 13 12 11 15 15 N 1.46508 * 109.46918 * 294.94978 * 14 13 12 16 16 C 1.36935 * 119.99857 * 174.36633 * 15 14 13 17 17 H 1.08001 * 120.00051 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99671 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00193 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99674 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47419 * 60.00041 * 20 18 16 22 22 H 1.48499 * 109.47200 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47235 * 300.00111 * 20 18 16 24 24 C 1.53000 * 117.49951 * 133.62098 * 13 12 11 25 25 C 1.52996 * 59.99969 * 252.50884 * 24 13 12 26 26 C 1.36180 * 120.56142 * 0.25341 * 7 5 4 27 27 C 1.41572 * 120.31276 * 180.02562 * 3 2 1 28 28 O 1.22264 * 120.65555 * 359.97438 * 27 3 2 29 29 H 1.08996 * 109.46868 * 60.00292 * 1 2 3 30 30 H 1.08998 * 109.46592 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.46867 * 300.00031 * 1 2 3 32 32 H 1.07994 * 119.61154 * 0.02562 * 4 3 2 33 33 H 0.96997 * 119.99640 * 359.97438 * 10 8 7 34 34 H 1.08998 * 109.46973 * 300.00259 * 11 10 8 35 35 H 1.09000 * 109.47206 * 60.00224 * 11 10 8 36 36 H 1.08995 * 109.47359 * 295.45581 * 12 11 10 37 37 H 1.08999 * 109.46947 * 55.46050 * 12 11 10 38 38 H 1.08993 * 109.47115 * 54.94622 * 14 13 12 39 39 H 1.08994 * 109.47279 * 174.95716 * 14 13 12 40 40 H 0.96995 * 119.99749 * 354.37462 * 15 14 13 41 41 H 0.97002 * 120.00067 * 179.97438 * 19 18 16 42 42 H 1.09002 * 117.49638 * 359.97438 * 24 13 12 43 43 H 1.09005 * 117.50117 * 145.01997 * 24 13 12 44 44 H 1.09008 * 117.49851 * 252.50897 * 25 24 13 45 45 H 1.09002 * 117.50223 * 107.48711 * 25 24 13 46 46 H 1.07998 * 120.40462 * 179.72239 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3128 2.3553 -0.0005 5 7 1.9179 3.5670 -0.0010 6 1 1.3732 4.3696 -0.0010 7 6 3.2773 3.6829 -0.0016 8 6 3.8995 5.0265 -0.0027 9 8 5.1097 5.1358 -0.0037 10 7 3.1234 6.1285 -0.0088 11 6 3.7390 7.4579 -0.0105 12 6 2.6443 8.5267 -0.0183 13 6 3.2835 9.9122 0.0942 14 6 3.6812 10.3428 1.5075 15 7 2.4783 10.4829 2.3320 16 6 2.5927 10.7491 3.6703 17 1 3.5697 10.8560 4.1180 18 6 1.4529 10.8824 4.4513 19 7 0.2623 10.7525 3.9056 20 14 1.6090 11.2461 6.2769 21 1 2.3258 12.5328 6.4658 22 1 0.2554 11.3398 6.8805 23 1 2.3698 10.1543 6.9359 24 6 2.7882 10.9986 -0.8626 25 6 4.1717 10.3764 -1.0619 26 6 4.0669 2.5734 -0.0068 27 6 3.4598 1.2937 -0.0005 28 8 4.1430 0.2798 -0.0006 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2344 2.2973 -0.0005 33 1 2.1574 6.0413 -0.0128 34 1 4.3547 7.5743 0.8813 35 1 4.3611 7.5691 -0.8986 36 1 2.0795 8.4616 -0.9483 37 1 1.9739 8.3663 0.8260 38 1 4.3363 9.5900 1.9458 39 1 4.2042 11.2980 1.4627 40 1 1.6009 10.3871 1.9298 41 1 -0.5342 10.8454 4.4515 42 1 2.0072 10.7261 -1.5725 43 1 2.7454 12.0203 -0.4853 44 1 5.0392 10.9889 -0.8156 45 1 4.3007 9.6947 -1.9026 46 1 5.1427 2.6681 -0.0117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166174050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:39 Heat of formation + Delta-G solvation = -57.698331 kcal Electronic energy + Delta-G solvation = -28023.238110 eV Core-core repulsion = 23914.282388 eV Total energy + Delta-G solvation = -4108.955721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.56378 -40.91838 -39.59461 -39.04787 -38.81336 -36.35613 -35.79094 -32.80851 -32.75919 -32.27304 -30.86262 -28.44873 -27.81086 -26.07090 -24.61924 -24.46899 -24.04008 -22.94177 -22.07788 -20.93619 -19.97428 -19.26229 -18.89969 -18.65790 -17.38099 -17.25268 -17.16521 -16.83644 -16.62247 -16.32810 -16.14992 -15.75821 -15.62416 -15.35426 -15.29972 -15.04940 -14.81435 -14.68534 -14.34547 -14.10039 -13.86335 -13.80308 -13.18416 -13.01700 -12.76697 -12.58891 -12.40783 -12.28297 -12.26196 -12.18014 -11.94275 -11.88102 -11.57772 -11.06363 -10.88199 -10.77125 -10.61157 -10.55263 -10.28144 -8.95262 -8.81497 -7.94075 -5.20436 -0.56021 0.10229 1.42467 1.48214 1.49012 1.55123 1.58592 1.68831 2.29292 2.52802 2.54983 2.91180 3.27929 3.39324 3.51398 3.62674 3.78873 3.85035 3.87487 3.99282 4.09347 4.24412 4.32979 4.41078 4.42454 4.46562 4.50112 4.56343 4.67145 4.81661 4.88119 4.90474 4.97755 5.00254 5.09240 5.12790 5.25628 5.30152 5.36640 5.37801 5.42099 5.50944 5.74501 6.18569 6.25841 6.29016 6.78490 6.87746 7.36935 8.12945 8.39362 9.28600 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.002450 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.726293 B =11425.253897 C =12845.394973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.324 6.324 3 C -0.061 4.061 4 C 0.074 3.926 5 N -0.533 5.533 6 H 0.442 0.558 7 C 0.146 3.854 8 C 0.559 3.441 9 O -0.542 6.542 10 N -0.700 5.700 11 C 0.129 3.871 12 C -0.079 4.079 13 C -0.137 4.137 14 C 0.185 3.815 15 N -0.733 5.733 16 C -0.245 4.245 17 H 0.067 0.933 18 C -0.067 4.067 19 N -0.962 5.962 20 Si 0.964 3.036 21 H -0.283 1.283 22 H -0.293 1.293 23 H -0.281 1.281 24 C -0.165 4.165 25 C -0.153 4.153 26 C -0.232 4.232 27 C 0.378 3.622 28 O -0.568 6.568 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.226 0.774 33 H 0.414 0.586 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.020 0.980 39 H 0.008 0.992 40 H 0.378 0.622 41 H 0.251 0.749 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.118 0.882 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.835 -12.235 -14.862 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.237 6.237 3 C -0.112 4.112 4 C -0.055 4.055 5 N -0.146 5.146 6 H 0.284 0.716 7 C 0.031 3.969 8 C 0.343 3.657 9 O -0.418 6.418 10 N -0.353 5.353 11 C 0.006 3.994 12 C -0.117 4.117 13 C -0.138 4.138 14 C 0.059 3.941 15 N -0.376 5.376 16 C -0.377 4.377 17 H 0.085 0.915 18 C -0.260 4.260 19 N -0.613 5.613 20 Si 0.794 3.206 21 H -0.209 1.209 22 H -0.219 1.219 23 H -0.208 1.208 24 C -0.202 4.202 25 C -0.190 4.190 26 C -0.259 4.259 27 C 0.274 3.726 28 O -0.459 6.459 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.242 0.758 33 H 0.252 0.748 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.084 0.916 38 H 0.038 0.962 39 H 0.026 0.974 40 H 0.211 0.789 41 H 0.060 0.940 42 H 0.129 0.871 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.136 0.864 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.468 -12.812 -14.700 19.805 hybrid contribution -0.865 0.675 1.316 1.713 sum -4.333 -12.137 -13.384 18.580 Atomic orbital electron populations 1.23512 0.76227 1.06073 1.03061 1.86239 1.23397 1.24605 1.89469 1.20180 0.93670 0.86362 1.10942 1.22282 1.00654 0.82282 1.00283 1.40850 1.03964 1.09893 1.59940 0.71569 1.20005 0.84045 0.94102 0.98741 1.17961 0.86682 0.83496 0.77519 1.90868 1.14796 1.86235 1.49902 1.45788 1.10700 1.05559 1.73227 1.21385 0.96148 0.79352 1.02503 1.21142 0.96596 0.90337 1.03589 1.21393 1.05854 0.95560 0.91021 1.20263 0.88862 0.96240 0.88778 1.42390 1.04108 1.85859 1.05253 1.19526 0.92526 1.39194 0.86461 0.91478 1.25388 0.95133 1.03721 1.01752 1.69763 0.96966 1.58484 1.36082 0.85357 0.76175 0.78079 0.81013 1.20903 1.21923 1.20777 1.23013 0.98390 0.97171 1.01626 1.23075 0.93895 1.03265 0.98770 1.22282 1.02113 0.90881 1.10667 1.17296 0.87979 0.89448 0.77912 1.90813 1.67235 1.39190 1.48626 0.90216 0.87104 0.90612 0.75801 0.74790 0.92955 0.89861 0.88415 0.91582 0.96207 0.97375 0.78922 0.93979 0.87052 0.90569 0.88996 0.86396 0.83104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.15 16 2 O -0.32 -6.82 10.33 -78.60 -0.81 -7.63 16 3 C -0.06 -1.25 6.71 22.54 0.15 -1.10 16 4 C 0.07 0.65 10.22 83.58 0.85 1.50 16 5 N -0.53 -4.33 5.26 -184.22 -0.97 -5.30 16 6 H 0.44 0.06 7.00 -92.71 -0.65 -0.59 16 7 C 0.15 2.55 6.77 40.56 0.27 2.83 16 8 C 0.56 11.53 7.80 86.85 0.68 12.21 16 9 O -0.54 -16.09 16.27 -3.76 -0.06 -16.15 16 10 N -0.70 -10.70 5.55 -465.77 -2.58 -13.28 16 11 C 0.13 2.59 5.51 86.38 0.48 3.07 16 12 C -0.08 -1.63 5.24 30.59 0.16 -1.47 16 13 C -0.14 -3.58 1.52 -52.18 -0.08 -3.66 16 14 C 0.19 6.85 6.10 86.38 0.53 7.38 16 15 N -0.73 -34.39 5.30 -343.44 -1.82 -36.21 16 16 C -0.25 -13.13 9.99 84.03 0.84 -12.29 16 17 H 0.07 3.54 7.83 -2.91 -0.02 3.52 16 18 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 19 N -0.96 -55.22 13.06 21.65 0.28 -54.94 16 20 Si 0.96 44.58 29.55 68.60 2.03 46.61 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 24 C -0.16 -3.88 9.90 30.59 0.30 -3.58 16 25 C -0.15 -3.10 9.57 30.59 0.29 -2.81 16 26 C -0.23 -5.81 9.53 22.63 0.22 -5.59 16 27 C 0.38 11.06 6.78 23.93 0.16 11.22 16 28 O -0.57 -22.41 17.71 8.95 0.16 -22.25 16 29 H 0.08 0.18 7.66 -2.39 -0.02 0.16 16 30 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.25 7.66 -2.39 -0.02 0.23 16 32 H 0.23 -0.36 6.21 -2.91 -0.02 -0.38 16 33 H 0.41 3.08 6.68 -92.71 -0.62 2.46 16 34 H 0.05 1.38 7.69 -2.39 -0.02 1.37 16 35 H 0.08 1.56 7.80 -2.39 -0.02 1.54 16 36 H 0.10 1.41 7.94 -2.39 -0.02 1.39 16 37 H 0.07 1.71 7.64 -2.39 -0.02 1.69 16 38 H 0.02 0.77 7.69 -2.39 -0.02 0.75 16 39 H 0.01 0.32 8.09 -2.39 -0.02 0.31 16 40 H 0.38 18.46 7.46 -92.71 -0.69 17.77 16 41 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 42 H 0.11 2.13 8.08 -2.39 -0.02 2.11 16 43 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 44 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 45 H 0.12 1.80 7.98 -2.39 -0.02 1.78 16 46 H 0.15 4.22 7.57 -2.91 -0.02 4.20 16 Total: -1.00 -85.97 389.01 1.74 -84.23 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -0.92 Total: 19.28 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 6.43 Total: 5.64 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -5.09 Total: -109.73 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -0.71 Total: -46.03 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -85.97 1.74 -84.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166174050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.531 kcal (2) G-P(sol) polarization free energy of solvation -85.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds