Wall clock time and date at job start Tue Mar 31 2020 19:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34223 * 116.99800 * 2 1 4 4 O 1.20823 * 120.00258 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99762 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.52053 * 33.15631 * 5 3 2 7 7 C 1.38903 * 120.00384 * 58.66533 * 6 5 3 8 8 C 1.39948 * 119.49837 * 180.52319 * 7 6 5 9 9 C 1.38306 * 119.59352 * 179.78854 * 8 7 6 10 10 C 1.39158 * 118.62923 * 0.48087 * 9 8 7 11 11 O 1.35620 * 120.49759 * 179.77084 * 10 9 8 12 12 C 1.42892 * 117.00701 * 359.97438 * 11 10 9 13 13 C 1.41233 * 118.99340 * 359.74434 * 10 9 8 14 14 C 1.40910 * 119.84771 * 179.97438 * 13 10 9 15 15 H 1.08004 * 120.00218 * 0.02562 * 14 13 10 16 16 C 1.40022 * 119.99970 * 180.02562 * 14 13 10 17 17 N 1.30780 * 120.00166 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00241 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47378 * 89.99650 * 18 16 14 20 20 H 1.48499 * 109.47602 * 209.99931 * 18 16 14 21 21 H 1.48508 * 109.46967 * 330.00083 * 18 16 14 22 22 N 1.31867 * 119.49572 * 0.80258 * 7 6 5 23 23 C 1.53115 * 109.52151 * 153.27992 * 5 3 2 24 24 C 1.53039 * 109.27873 * 177.56051 * 23 5 3 25 25 N 1.46851 * 109.52216 * 300.82126 * 24 23 5 26 26 C 1.46846 * 111.19686 * 61.74122 * 25 24 23 27 27 C 1.53037 * 109.52478 * 298.25648 * 26 25 24 28 28 H 1.08997 * 109.46781 * 300.00162 * 1 2 3 29 29 H 1.08990 * 109.46953 * 59.99982 * 1 2 3 30 30 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 31 31 H 0.97004 * 120.00071 * 238.66580 * 6 5 3 32 32 H 1.08000 * 120.19945 * 0.02562 * 8 7 6 33 33 H 1.08004 * 120.68215 * 180.22988 * 9 8 7 34 34 H 1.09002 * 109.46852 * 300.00428 * 12 11 10 35 35 H 1.08999 * 109.47368 * 60.00132 * 12 11 10 36 36 H 1.09001 * 109.47615 * 180.02562 * 12 11 10 37 37 H 0.96998 * 120.00266 * 179.97438 * 17 16 14 38 38 H 1.09006 * 109.50536 * 57.62062 * 23 5 3 39 39 H 1.08999 * 109.50572 * 297.49941 * 23 5 3 40 40 H 1.08997 * 109.46688 * 180.80662 * 24 23 5 41 41 H 1.09001 * 109.45358 * 60.82698 * 24 23 5 42 42 H 1.00899 * 110.99934 * 185.83438 * 25 24 23 43 43 H 1.08995 * 109.46611 * 58.27291 * 26 25 24 44 44 H 1.08997 * 109.46371 * 178.24524 * 26 25 24 45 45 H 1.08993 * 109.50593 * 299.24034 * 27 26 25 46 46 H 1.09005 * 109.54029 * 179.13669 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 4.1154 0.1462 -0.7562 7 6 3.7663 -0.0331 -2.0886 8 6 4.2884 -1.1211 -2.7973 9 6 3.9386 -1.3041 -4.1229 10 6 3.0786 -0.3863 -4.7183 11 8 2.7145 -0.5266 -6.0171 12 6 3.2525 -1.6454 -6.7247 13 6 2.5904 0.6931 -3.9493 14 6 1.7189 1.6333 -4.5343 15 1 1.4255 1.5274 -5.5683 16 6 1.2334 2.7049 -3.7750 17 7 1.5883 2.8329 -2.5228 18 14 0.0776 3.9510 -4.5502 19 1 -1.3269 3.5061 -4.3641 20 1 0.2680 5.2732 -3.9017 21 1 0.3728 4.0641 -6.0012 22 7 2.9524 0.8275 -2.6681 23 6 4.0096 2.5890 -0.6494 24 6 5.5356 2.6912 -0.5923 25 7 5.9788 2.6413 0.8068 26 6 5.6057 1.3685 1.4369 27 6 4.0819 1.2268 1.4404 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 4.7228 -0.4759 -0.3260 32 1 4.9572 -1.8157 -2.3110 33 1 4.3282 -2.1397 -4.6854 34 1 4.3407 -1.5823 -6.7307 35 1 2.9449 -2.5683 -6.2330 36 1 2.8828 -1.6389 -7.7500 37 1 1.2522 3.5755 -1.9969 38 1 3.5684 3.4277 -0.1109 39 1 3.6822 2.6103 -1.6888 40 1 5.8536 3.6324 -1.0406 41 1 5.9759 1.8597 -1.1426 42 1 6.9724 2.8021 0.8773 43 1 6.0458 0.5433 0.8771 44 1 5.9745 1.3490 2.4624 45 1 3.6417 2.0440 2.0118 46 1 3.8053 0.2751 1.8943 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166930740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:31 Heat of formation + Delta-G solvation = -59.918323 kcal Electronic energy + Delta-G solvation = -31914.566167 eV Core-core repulsion = 27805.514180 eV Total energy + Delta-G solvation = -4109.051988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.13451 -38.70860 -38.03880 -36.58298 -35.37581 -34.26559 -33.19223 -30.80786 -30.44078 -29.94168 -28.19186 -27.22104 -26.36829 -25.06541 -23.96628 -22.71193 -21.41783 -20.86600 -20.53635 -18.47518 -17.71191 -16.97006 -16.61593 -16.37196 -15.86759 -15.68419 -15.25342 -15.17003 -14.60802 -14.50676 -14.19351 -14.08863 -13.54396 -13.18069 -13.04070 -12.80711 -12.59127 -12.36687 -12.32560 -12.12159 -11.85518 -11.70314 -11.37435 -11.19495 -11.16536 -11.11778 -10.72099 -10.67657 -10.55379 -10.46545 -10.38599 -10.09364 -9.83428 -9.76711 -9.43914 -9.30521 -8.44746 -8.18146 -8.00504 -7.58136 -6.33059 -6.30233 -4.30846 2.85579 3.10389 3.18078 3.20935 3.27418 3.31608 3.62067 4.04660 4.18582 4.45555 4.63063 4.85429 5.00977 5.15589 5.37170 5.57045 5.67226 5.71144 5.75549 5.80133 5.80884 5.84412 5.88849 5.95828 5.99682 6.02774 6.10509 6.12549 6.17421 6.21060 6.37246 6.46203 6.53226 6.78881 6.83519 7.15255 7.25808 7.30302 7.40943 7.55999 7.61630 7.68688 7.74543 8.02586 8.32595 8.48944 8.58717 8.82255 8.89759 9.18319 10.17464 10.40288 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010014 B = 0.006221 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.447696 B = 4499.535235 C = 5555.030130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.356 6.356 3 C 0.487 3.513 4 O -0.491 6.491 5 C 0.226 3.774 6 N -0.724 5.724 7 C 0.397 3.603 8 C -0.346 4.346 9 C -0.111 4.111 10 C -0.077 4.077 11 O -0.312 6.312 12 C 0.037 3.963 13 C 0.287 3.713 14 C -0.408 4.408 15 H 0.088 0.912 16 C 0.065 3.935 17 N -0.691 5.691 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.278 1.278 21 H -0.264 1.264 22 N -0.512 5.512 23 C -0.119 4.119 24 C 0.062 3.938 25 N -0.691 5.691 26 C 0.066 3.934 27 C -0.122 4.122 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.394 0.606 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.281 0.719 38 H 0.068 0.932 39 H 0.142 0.858 40 H 0.069 0.931 41 H 0.033 0.967 42 H 0.335 0.665 43 H 0.032 0.968 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.710 -3.377 6.048 8.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.272 6.272 3 C 0.327 3.673 4 O -0.375 6.375 5 C 0.136 3.864 6 N -0.363 5.363 7 C 0.160 3.840 8 C -0.372 4.372 9 C -0.136 4.136 10 C -0.125 4.125 11 O -0.226 6.226 12 C -0.059 4.059 13 C 0.160 3.840 14 C -0.440 4.440 15 H 0.106 0.894 16 C -0.162 4.162 17 N -0.313 5.313 18 Si 0.728 3.272 19 H -0.198 1.198 20 H -0.203 1.203 21 H -0.188 1.188 22 N -0.236 5.236 23 C -0.158 4.158 24 C -0.066 4.066 25 N -0.322 5.322 26 C -0.064 4.064 27 C -0.160 4.160 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.228 0.772 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.160 0.840 40 H 0.087 0.913 41 H 0.052 0.948 42 H 0.152 0.848 43 H 0.050 0.950 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.330 -1.645 6.833 7.777 hybrid contribution 0.688 -1.455 -1.037 1.914 sum 4.017 -3.100 5.796 7.704 Atomic orbital electron populations 1.22971 0.78428 1.01965 1.01683 1.86489 1.21648 1.34510 1.84574 1.23577 0.91382 0.80978 0.71368 1.90528 1.66411 1.36301 1.44233 1.19693 0.85382 0.89835 0.91506 1.44154 1.53436 1.29969 1.08782 1.18403 0.91089 0.90238 0.84248 1.20153 1.16232 1.04896 0.95939 1.20612 0.99466 0.98170 0.95333 1.20007 1.06515 1.01552 0.84412 1.85918 1.68969 1.45450 1.22247 1.22667 0.97827 0.89416 0.96036 1.17718 0.91289 0.88988 0.86006 1.19501 1.21199 1.05003 0.98290 0.89412 1.26045 0.96818 0.98542 0.94825 1.69944 1.30623 1.25193 1.05544 0.86393 0.80727 0.79833 0.80277 1.19783 1.20264 1.18769 1.68314 1.18376 1.26890 1.09974 1.22133 0.92525 0.93672 1.07470 1.21964 0.97229 1.00326 0.87127 1.60400 1.20004 1.33625 1.18196 1.21781 0.94996 0.90721 0.98892 1.21881 0.96260 1.02900 0.94943 0.93422 0.91942 0.89767 0.77151 0.89389 0.88427 0.94564 0.94564 0.90269 0.90622 0.91301 0.84048 0.91295 0.94825 0.84776 0.95008 0.90882 0.89671 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.86 16 2 O -0.36 -7.42 10.07 -39.24 -0.40 -7.82 16 3 C 0.49 10.36 4.83 36.01 0.17 10.54 16 4 O -0.49 -11.37 13.40 -18.75 -0.25 -11.62 16 5 C 0.23 4.19 0.63 -132.85 -0.08 4.10 16 6 N -0.72 -13.64 4.06 -48.62 -0.20 -13.84 16 7 C 0.40 9.06 6.76 -155.26 -1.05 8.01 16 8 C -0.35 -7.67 9.94 -38.92 -0.39 -8.06 16 9 C -0.11 -2.52 9.12 -39.21 -0.36 -2.87 16 10 C -0.08 -1.92 6.74 -38.10 -0.26 -2.18 16 11 O -0.31 -7.23 9.61 -18.56 -0.18 -7.41 16 12 C 0.04 0.64 9.83 101.05 0.99 1.63 16 13 C 0.29 7.68 6.56 -84.85 -0.56 7.13 16 14 C -0.41 -10.84 8.94 -37.90 -0.34 -11.18 16 15 H 0.09 2.32 7.31 -52.48 -0.38 1.93 16 16 C 0.06 1.61 5.50 -17.33 -0.10 1.52 16 17 N -0.69 -17.43 7.35 55.55 0.41 -17.02 16 18 Si 0.90 19.12 29.56 -169.99 -5.02 14.09 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 22 N -0.51 -12.92 4.29 -10.20 -0.04 -12.97 16 23 C -0.12 -2.36 4.15 -26.65 -0.11 -2.47 16 24 C 0.06 1.03 6.41 -3.83 -0.02 1.00 16 25 N -0.69 -9.39 6.85 -113.82 -0.78 -10.17 16 26 C 0.07 0.82 6.39 -3.83 -0.02 0.80 16 27 C -0.12 -1.78 4.92 -26.65 -0.13 -1.91 16 28 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.39 6.41 7.43 -40.82 -0.30 6.11 16 32 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.10 1.94 6.44 -52.48 -0.34 1.60 16 34 H 0.04 0.58 7.69 -51.93 -0.40 0.19 16 35 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.28 6.96 7.69 -40.82 -0.31 6.65 16 38 H 0.07 1.43 7.78 -51.93 -0.40 1.02 16 39 H 0.14 3.35 4.27 -51.93 -0.22 3.12 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.03 0.59 7.69 -51.93 -0.40 0.19 16 42 H 0.34 3.77 8.90 -39.29 -0.35 3.42 16 43 H 0.03 0.39 7.00 -51.93 -0.36 0.03 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -29.74 360.82 -8.68 -38.42 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -6.47 Total: 14.96 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -1.18 Total: 7.92 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.61 Total: -53.99 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.82 Total: -26.85 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.74 -8.68 -38.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166930740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.494 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds