Wall clock time and date at job start Tue Mar 31 2020 19:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34223 * 116.99800 * 2 1 4 4 O 1.20823 * 120.00258 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99762 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.52053 * 33.15631 * 5 3 2 7 7 C 1.38903 * 120.00384 * 58.66533 * 6 5 3 8 8 C 1.39948 * 119.49837 * 180.52319 * 7 6 5 9 9 C 1.38306 * 119.59352 * 179.78854 * 8 7 6 10 10 C 1.39158 * 118.62923 * 0.48087 * 9 8 7 11 11 O 1.35620 * 120.49759 * 179.77084 * 10 9 8 12 12 C 1.42892 * 117.00701 * 359.97438 * 11 10 9 13 13 C 1.41233 * 118.99340 * 359.74434 * 10 9 8 14 14 C 1.40910 * 119.84771 * 179.97438 * 13 10 9 15 15 H 1.08004 * 120.00218 * 0.02562 * 14 13 10 16 16 C 1.40022 * 119.99970 * 180.02562 * 14 13 10 17 17 N 1.30780 * 120.00166 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00241 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47378 * 89.99650 * 18 16 14 20 20 H 1.48499 * 109.47602 * 209.99931 * 18 16 14 21 21 H 1.48508 * 109.46967 * 330.00083 * 18 16 14 22 22 N 1.31867 * 119.49572 * 0.80258 * 7 6 5 23 23 C 1.53115 * 109.52151 * 153.27992 * 5 3 2 24 24 C 1.53039 * 109.27873 * 177.56051 * 23 5 3 25 25 N 1.46851 * 109.52216 * 300.82126 * 24 23 5 26 26 C 1.46846 * 111.19686 * 61.74122 * 25 24 23 27 27 C 1.53037 * 109.52478 * 298.25648 * 26 25 24 28 28 H 1.08997 * 109.46781 * 300.00162 * 1 2 3 29 29 H 1.08990 * 109.46953 * 59.99982 * 1 2 3 30 30 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 31 31 H 0.97004 * 120.00071 * 238.66580 * 6 5 3 32 32 H 1.08000 * 120.19945 * 0.02562 * 8 7 6 33 33 H 1.08004 * 120.68215 * 180.22988 * 9 8 7 34 34 H 1.09002 * 109.46852 * 300.00428 * 12 11 10 35 35 H 1.08999 * 109.47368 * 60.00132 * 12 11 10 36 36 H 1.09001 * 109.47615 * 180.02562 * 12 11 10 37 37 H 0.96998 * 120.00266 * 179.97438 * 17 16 14 38 38 H 1.09006 * 109.50536 * 57.62062 * 23 5 3 39 39 H 1.08999 * 109.50572 * 297.49941 * 23 5 3 40 40 H 1.08997 * 109.46688 * 180.80662 * 24 23 5 41 41 H 1.09001 * 109.45358 * 60.82698 * 24 23 5 42 42 H 1.00899 * 110.99934 * 185.83438 * 25 24 23 43 43 H 1.08995 * 109.46611 * 58.27291 * 26 25 24 44 44 H 1.08997 * 109.46371 * 178.24524 * 26 25 24 45 45 H 1.08993 * 109.50593 * 299.24034 * 27 26 25 46 46 H 1.09005 * 109.54029 * 179.13669 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 4.1154 0.1462 -0.7562 7 6 3.7663 -0.0331 -2.0886 8 6 4.2884 -1.1211 -2.7973 9 6 3.9386 -1.3041 -4.1229 10 6 3.0786 -0.3863 -4.7183 11 8 2.7145 -0.5266 -6.0171 12 6 3.2525 -1.6454 -6.7247 13 6 2.5904 0.6931 -3.9493 14 6 1.7189 1.6333 -4.5343 15 1 1.4255 1.5274 -5.5683 16 6 1.2334 2.7049 -3.7750 17 7 1.5883 2.8329 -2.5228 18 14 0.0776 3.9510 -4.5502 19 1 -1.3269 3.5061 -4.3641 20 1 0.2680 5.2732 -3.9017 21 1 0.3728 4.0641 -6.0012 22 7 2.9524 0.8275 -2.6681 23 6 4.0096 2.5890 -0.6494 24 6 5.5356 2.6912 -0.5923 25 7 5.9788 2.6413 0.8068 26 6 5.6057 1.3685 1.4369 27 6 4.0819 1.2268 1.4404 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 4.7228 -0.4759 -0.3260 32 1 4.9572 -1.8157 -2.3110 33 1 4.3282 -2.1397 -4.6854 34 1 4.3407 -1.5823 -6.7307 35 1 2.9449 -2.5683 -6.2330 36 1 2.8828 -1.6389 -7.7500 37 1 1.2522 3.5755 -1.9969 38 1 3.5684 3.4277 -0.1109 39 1 3.6822 2.6103 -1.6888 40 1 5.8536 3.6324 -1.0406 41 1 5.9759 1.8597 -1.1426 42 1 6.9724 2.8021 0.8773 43 1 6.0458 0.5433 0.8771 44 1 5.9745 1.3490 2.4624 45 1 3.6417 2.0440 2.0118 46 1 3.8053 0.2751 1.8943 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166930740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:30 Heat of formation + Delta-G solvation = -79.325763 kcal Electronic energy + Delta-G solvation = -31915.407737 eV Core-core repulsion = 27805.514180 eV Total energy + Delta-G solvation = -4109.893557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.68953 -40.44439 -39.50134 -38.22252 -37.01970 -35.90885 -34.85498 -32.30279 -32.06317 -31.46228 -29.86442 -28.70461 -27.94593 -26.75712 -25.41729 -23.99238 -23.21194 -22.57238 -21.97946 -19.96418 -19.50782 -18.54505 -18.28584 -17.75870 -17.52441 -17.31862 -16.82048 -16.79668 -16.22305 -16.15918 -15.50525 -15.42833 -14.97493 -14.79823 -14.50374 -14.39869 -14.16442 -14.03033 -13.91044 -13.59652 -13.29634 -13.05460 -12.94262 -12.88563 -12.80281 -12.56098 -12.42760 -12.19618 -12.10497 -12.04438 -11.96232 -11.56286 -11.52244 -11.43757 -11.13872 -10.93952 -10.07375 -9.85239 -9.38265 -9.32516 -8.16902 -8.05269 -6.21751 1.05043 1.31955 1.40646 1.51243 1.54926 1.66891 2.10537 2.26974 2.66422 2.98820 3.07186 3.37220 3.78601 3.83998 4.05936 4.12655 4.28842 4.31004 4.33164 4.38719 4.45202 4.47779 4.49686 4.52863 4.59806 4.66480 4.68489 4.76452 4.77159 4.80064 4.93791 5.01406 5.04748 5.16332 5.27266 5.35850 5.54200 5.78534 5.85720 5.86933 5.98133 6.14832 6.23377 6.51254 6.59904 6.66892 6.91711 7.07124 7.24656 7.38603 8.35024 8.53053 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010014 B = 0.006221 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.447696 B = 4499.535235 C = 5555.030130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.367 6.367 3 C 0.480 3.520 4 O -0.519 6.519 5 C 0.225 3.775 6 N -0.708 5.708 7 C 0.381 3.619 8 C -0.341 4.341 9 C -0.111 4.111 10 C -0.101 4.101 11 O -0.340 6.340 12 C 0.030 3.970 13 C 0.254 3.746 14 C -0.444 4.444 15 H 0.075 0.925 16 C 0.028 3.972 17 N -0.703 5.703 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.272 1.272 21 H -0.262 1.262 22 N -0.521 5.521 23 C -0.115 4.115 24 C 0.075 3.925 25 N -0.690 5.690 26 C 0.068 3.932 27 C -0.116 4.116 28 H 0.064 0.936 29 H 0.028 0.972 30 H 0.117 0.883 31 H 0.409 0.591 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.107 0.893 37 H 0.275 0.725 38 H 0.050 0.950 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.023 0.977 42 H 0.354 0.646 43 H 0.040 0.960 44 H 0.108 0.892 45 H 0.080 0.920 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.328 -4.838 7.404 10.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.283 6.283 3 C 0.321 3.679 4 O -0.404 6.404 5 C 0.135 3.865 6 N -0.348 5.348 7 C 0.142 3.858 8 C -0.367 4.367 9 C -0.135 4.135 10 C -0.149 4.149 11 O -0.254 6.254 12 C -0.065 4.065 13 C 0.126 3.874 14 C -0.476 4.476 15 H 0.093 0.907 16 C -0.197 4.197 17 N -0.324 5.324 18 Si 0.788 3.212 19 H -0.198 1.198 20 H -0.197 1.197 21 H -0.186 1.186 22 N -0.245 5.245 23 C -0.154 4.154 24 C -0.054 4.054 25 N -0.323 5.323 26 C -0.061 4.061 27 C -0.154 4.154 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.135 0.865 31 H 0.247 0.753 32 H 0.136 0.864 33 H 0.145 0.855 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.126 0.874 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.121 0.879 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.173 0.827 43 H 0.058 0.942 44 H 0.126 0.874 45 H 0.099 0.901 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.991 -3.141 8.214 10.112 hybrid contribution 0.241 -1.144 -1.454 1.865 sum 5.233 -4.285 6.760 9.562 Atomic orbital electron populations 1.23121 0.77233 1.03869 1.00844 1.86469 1.23003 1.34458 1.84407 1.24222 0.92539 0.80671 0.70437 1.90506 1.67260 1.37139 1.45537 1.19787 0.83858 0.88975 0.93833 1.44018 1.53123 1.30241 1.07399 1.18759 0.90955 0.90269 0.85769 1.20569 1.15525 1.04692 0.95907 1.20959 0.98486 0.98344 0.95733 1.20099 1.07500 1.01946 0.85368 1.85856 1.69882 1.47917 1.21789 1.22977 0.98546 0.88051 0.96929 1.18108 0.92043 0.90087 0.87142 1.19541 1.23219 1.06718 0.98122 0.90679 1.26655 0.98033 0.99719 0.95284 1.70085 1.31085 1.25146 1.06091 0.85453 0.78641 0.77722 0.79405 1.19751 1.19703 1.18560 1.68293 1.18800 1.27672 1.09704 1.21915 0.94741 0.93862 1.04873 1.21695 0.94770 0.99912 0.89026 1.60303 1.21464 1.34643 1.15903 1.21879 0.93169 0.90243 1.00820 1.21908 0.97881 1.03871 0.91725 0.91746 0.95266 0.86503 0.75335 0.86379 0.85505 0.93493 0.93577 0.87422 0.91357 0.93158 0.87922 0.91359 0.95841 0.82700 0.94153 0.87426 0.90147 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 10.56 113.37 1.20 2.75 16 2 O -0.37 -15.25 10.07 -51.35 -0.52 -15.77 16 3 C 0.48 20.64 4.83 71.24 0.34 20.98 16 4 O -0.52 -24.85 13.40 21.97 0.29 -24.56 16 5 C 0.23 8.22 0.63 2.94 0.00 8.22 16 6 N -0.71 -25.66 4.06 -307.75 -1.25 -26.90 16 7 C 0.38 17.19 6.76 133.45 0.90 18.09 16 8 C -0.34 -14.50 9.94 22.70 0.23 -14.27 16 9 C -0.11 -4.86 9.12 22.51 0.21 -4.66 16 10 C -0.10 -5.12 6.74 23.23 0.16 -4.96 16 11 O -0.34 -15.94 9.61 -89.32 -0.86 -16.79 16 12 C 0.03 1.00 9.83 113.37 1.11 2.12 16 13 C 0.25 14.10 6.56 40.23 0.26 14.36 16 14 C -0.44 -24.85 8.94 23.36 0.21 -24.64 16 15 H 0.08 4.22 7.31 -2.91 -0.02 4.20 16 16 C 0.03 1.45 5.50 85.28 0.47 1.92 16 17 N -0.70 -37.25 7.35 21.84 0.16 -37.09 16 18 Si 0.97 41.10 29.56 68.60 2.03 43.13 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 21 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 22 N -0.52 -27.02 4.29 -186.18 -0.80 -27.82 16 23 C -0.11 -4.61 4.15 30.65 0.13 -4.48 16 24 C 0.08 2.43 6.41 86.33 0.55 2.98 16 25 N -0.69 -16.95 6.85 -514.01 -3.52 -20.47 16 26 C 0.07 1.44 6.39 86.33 0.55 1.99 16 27 C -0.12 -3.10 4.92 30.65 0.15 -2.95 16 28 H 0.06 2.06 8.13 -2.39 -0.02 2.05 16 29 H 0.03 1.22 8.13 -2.39 -0.02 1.20 16 30 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 31 H 0.41 12.13 7.43 -92.71 -0.69 11.44 16 32 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 33 H 0.13 4.70 6.44 -2.91 -0.02 4.68 16 34 H 0.05 1.43 7.69 -2.39 -0.02 1.41 16 35 H 0.05 1.41 7.69 -2.39 -0.02 1.39 16 36 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.27 14.37 7.69 -92.71 -0.71 13.65 16 38 H 0.05 2.15 7.78 -2.38 -0.02 2.14 16 39 H 0.10 5.06 4.27 -2.39 -0.01 5.05 16 40 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.02 0.80 7.69 -2.39 -0.02 0.78 16 42 H 0.35 6.78 8.90 -89.69 -0.80 5.98 16 43 H 0.04 0.82 7.00 -2.39 -0.02 0.80 16 44 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -68.57 360.82 1.61 -66.96 By element: Atomic # 1 Polarization: 42.25 SS G_CDS: -0.40 Total: 41.85 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 6.47 Total: 17.47 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -5.41 Total: -112.29 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -1.08 Total: -57.12 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -68.57 1.61 -66.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166930740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.368 kcal (2) G-P(sol) polarization free energy of solvation -68.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds