Wall clock time and date at job start Tue Mar 31 2020 18:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35907 * 117.00002 * 2 1 4 4 C 1.38857 * 119.98585 * 0.02562 * 3 2 1 5 5 C 1.38247 * 120.23972 * 179.97438 * 4 3 2 6 6 C 1.38010 * 120.20201 * 359.74329 * 5 4 3 7 7 C 1.39562 * 119.96895 * 0.51286 * 6 5 4 8 8 C 1.47859 * 120.11856 * 179.76978 * 7 6 5 9 9 O 1.21553 * 120.00075 * 179.72030 * 8 7 6 10 10 N 1.34779 * 119.99961 * 359.71965 * 8 7 6 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 N 1.46902 * 109.46901 * 180.02562 * 13 12 11 15 15 C 1.46907 * 110.99665 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47095 * 179.97438 * 15 14 13 17 17 O 1.21303 * 119.99942 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00172 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00010 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99731 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99713 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00428 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99709 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47405 * 59.99685 * 23 21 19 25 25 H 1.48501 * 109.47294 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47090 * 299.99690 * 23 21 19 27 27 C 1.38457 * 119.98506 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46937 * 60.00601 * 1 2 3 29 29 H 1.09002 * 109.47368 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47416 * 300.00705 * 1 2 3 31 31 H 1.07998 * 119.87870 * 359.95570 * 4 3 2 32 32 H 1.07996 * 119.89560 * 179.97438 * 5 4 3 33 33 H 1.08000 * 120.01080 * 180.25656 * 6 5 4 34 34 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 36 36 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 37 37 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 38 38 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 39 39 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 40 40 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 41 41 H 1.00898 * 111.00229 * 56.04458 * 14 13 12 42 42 H 1.08995 * 109.46981 * 299.99659 * 15 14 13 43 43 H 1.08993 * 109.47289 * 60.00009 * 15 14 13 44 44 H 0.96992 * 119.99793 * 0.02562 * 18 16 15 45 45 H 0.96999 * 120.00502 * 180.02562 * 22 21 19 46 46 H 1.08001 * 120.10192 * 0.05039 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3753 0.0005 5 6 1.9116 3.6099 0.0011 6 6 3.2892 3.6931 0.0064 7 6 4.0580 2.5283 0.0005 8 6 5.5341 2.6136 0.0011 9 8 6.2016 1.5978 0.0010 10 7 6.1396 3.8178 0.0016 11 6 7.6021 3.9023 0.0016 12 6 8.0280 5.3718 0.0029 13 6 9.5554 5.4601 0.0023 14 7 9.9643 6.8710 0.0041 15 6 11.4282 6.9949 0.0042 16 6 11.8090 8.4529 0.0055 17 8 10.9458 9.3052 0.0058 18 7 13.1085 8.8101 0.0063 19 6 13.4549 10.1366 0.0070 20 1 12.6863 10.8954 0.0073 21 6 14.7947 10.5047 0.0072 22 7 15.7298 9.5815 0.0074 23 14 15.2667 12.3121 0.0089 24 1 14.7145 12.9669 1.2219 25 1 16.7464 12.4374 0.0095 26 1 14.7144 12.9690 -1.2031 27 6 3.4287 1.2830 0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2111 2.3162 0.0002 32 1 1.3178 4.5119 0.0011 33 1 3.7720 4.6591 0.0110 34 1 5.6069 4.6284 0.0012 35 1 7.9945 3.4106 -0.8886 36 1 7.9945 3.4099 0.8914 37 1 7.6356 5.8646 -0.8867 38 1 7.6356 5.8630 0.8932 39 1 9.9482 4.9672 0.8916 40 1 9.9475 4.9689 -0.8884 41 1 9.5601 7.3637 0.7864 42 1 11.8336 6.5123 0.8935 43 1 11.8335 6.5147 -0.8864 44 1 13.7987 8.1286 0.0056 45 1 16.6652 9.8385 0.0079 46 1 4.0183 0.3782 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171903099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:39 Heat of formation + Delta-G solvation = -86.163989 kcal Electronic energy + Delta-G solvation = -26284.408933 eV Core-core repulsion = 22174.218848 eV Total energy + Delta-G solvation = -4110.190085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.89049 -39.77721 -38.32016 -37.58529 -36.55327 -34.94126 -33.84766 -32.06469 -31.51714 -31.18573 -30.39671 -27.85048 -27.20068 -25.17066 -23.95596 -23.00044 -22.78171 -21.73808 -20.70338 -19.28155 -18.93307 -17.87437 -17.02459 -16.78626 -16.57516 -16.36186 -16.26712 -16.04148 -15.72392 -15.38799 -14.63880 -14.56630 -14.35407 -14.29384 -14.07476 -14.00556 -13.50253 -13.42324 -13.16639 -12.82119 -12.75853 -12.40040 -12.07551 -11.85924 -11.79619 -11.64350 -11.50012 -11.46134 -11.42532 -11.07295 -10.94048 -10.44021 -10.29337 -10.20928 -9.60303 -9.49791 -9.33591 -8.79239 -8.47157 -8.07481 -7.95784 -6.41283 -3.82327 0.33684 0.88564 2.47893 2.54227 2.95840 3.20419 3.26171 3.30499 3.39935 3.91106 4.07932 4.19693 4.21932 4.29508 4.48127 4.56538 4.59516 4.60557 4.80634 4.83159 4.92897 4.94761 5.02982 5.04339 5.17922 5.26275 5.40696 5.42241 5.49066 5.61562 5.68385 5.79425 5.80370 5.82723 5.95058 5.98512 6.01812 6.04306 6.15696 6.27146 6.82470 7.14374 7.18935 7.55228 7.64177 7.86191 8.06367 8.61585 9.17978 9.54595 10.06037 10.76379 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.044085 B = 0.001277 C = 0.001243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.982964 B =21922.388770 C =22518.983645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.120 3.880 4 C -0.185 4.185 5 C -0.086 4.086 6 C -0.124 4.124 7 C -0.094 4.094 8 C 0.557 3.443 9 O -0.533 6.533 10 N -0.722 5.722 11 C 0.120 3.880 12 C -0.130 4.130 13 C 0.062 3.938 14 N -0.669 5.669 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.585 6.585 18 N -0.563 5.563 19 C -0.301 4.301 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.093 4.093 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.402 0.598 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.998 -17.895 0.869 34.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.074 3.926 4 C -0.204 4.204 5 C -0.104 4.104 6 C -0.143 4.143 7 C -0.097 4.097 8 C 0.344 3.656 9 O -0.410 6.410 10 N -0.374 5.374 11 C -0.004 4.004 12 C -0.168 4.168 13 C -0.068 4.068 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.469 6.469 18 N -0.199 5.199 19 C -0.431 4.431 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.112 4.112 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.237 0.763 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -28.809 -18.141 0.190 34.046 hybrid contribution 0.447 0.769 0.893 1.261 sum -28.362 -17.372 1.083 33.277 Atomic orbital electron populations 1.23106 0.78059 1.04289 1.01433 1.86112 1.21594 1.26467 1.88649 1.18879 0.92022 0.84524 0.97135 1.21465 1.00427 0.92343 1.06204 1.20908 0.94308 0.97327 0.97820 1.21248 0.94120 0.97533 1.01353 1.19693 0.92899 0.93535 1.03577 1.18175 0.87210 0.83598 0.76597 1.90799 1.66007 1.34914 1.49293 1.45907 1.08167 1.08147 1.75198 1.21383 0.78813 0.97305 1.02859 1.21750 0.96715 0.94601 1.03722 1.21827 0.93904 0.90162 1.00892 1.60059 1.08336 1.10556 1.51229 1.21670 0.88580 0.96658 1.01308 1.19814 0.83572 0.89555 0.84510 1.90519 1.49045 1.51813 1.55508 1.41854 1.05288 1.08513 1.64291 1.19663 0.92284 0.83342 1.47784 0.87969 1.25255 0.95337 0.99991 0.97262 1.69600 1.00847 1.33386 1.50468 0.85918 0.77129 0.82097 0.79071 1.19925 1.20966 1.19870 1.20480 0.91355 0.98347 1.01054 0.92474 0.87978 0.92488 0.84961 0.84874 0.85202 0.76252 0.90917 0.91158 0.90049 0.91188 0.95193 0.90710 0.83205 0.93798 0.89531 0.77434 0.91802 0.83732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.48 10.49 -19.45 -0.20 -2.69 16 3 C 0.12 0.99 6.68 -39.27 -0.26 0.72 16 4 C -0.19 -1.14 9.03 -39.35 -0.36 -1.49 16 5 C -0.09 -0.48 10.03 -39.66 -0.40 -0.88 16 6 C -0.12 -0.81 9.54 -39.17 -0.37 -1.19 16 7 C -0.09 -0.86 5.87 -104.99 -0.62 -1.47 16 8 C 0.56 6.09 7.77 -12.32 -0.10 6.00 16 9 O -0.53 -7.78 16.35 5.32 0.09 -7.70 16 10 N -0.72 -6.18 5.51 -61.24 -0.34 -6.52 16 11 C 0.12 1.10 5.67 -4.04 -0.02 1.08 16 12 C -0.13 -1.19 5.59 -26.73 -0.15 -1.34 16 13 C 0.06 0.72 5.69 -3.82 -0.02 0.69 16 14 N -0.67 -10.48 6.13 -115.05 -0.70 -11.19 16 15 C 0.05 0.89 6.17 -4.97 -0.03 0.85 16 16 C 0.44 10.40 7.82 -10.99 -0.09 10.31 16 17 O -0.58 -15.85 15.78 5.54 0.09 -15.77 16 18 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 19 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 20 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 22 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 23 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C -0.09 -0.90 9.53 -39.02 -0.37 -1.27 16 28 H 0.06 0.15 7.66 -51.93 -0.40 -0.25 16 29 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.15 7.66 -51.93 -0.40 -0.25 16 31 H 0.13 0.49 6.28 -52.49 -0.33 0.16 16 32 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 33 H 0.13 0.55 6.40 -52.49 -0.34 0.21 16 34 H 0.40 2.40 6.50 -40.82 -0.27 2.13 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.35 5.57 8.43 -39.29 -0.33 5.24 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 45 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.14 1.51 7.65 -52.49 -0.40 1.11 16 LS Contribution 393.12 15.07 5.92 5.92 Total: -1.00 -35.03 393.12 -8.06 -43.09 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -6.52 Total: 11.96 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -2.03 Total: 5.06 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.38 Total: -55.90 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.03 Total: -26.15 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.03 -8.06 -43.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171903099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.073 kcal (2) G-P(sol) polarization free energy of solvation -35.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds