Wall clock time and date at job start Tue Mar 31 2020 18:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35907 * 117.00002 * 2 1 4 4 C 1.38857 * 119.98585 * 0.02562 * 3 2 1 5 5 C 1.38247 * 120.23972 * 179.97438 * 4 3 2 6 6 C 1.38010 * 120.20201 * 359.74329 * 5 4 3 7 7 C 1.39562 * 119.96895 * 0.51286 * 6 5 4 8 8 C 1.47859 * 120.11856 * 179.76978 * 7 6 5 9 9 O 1.21553 * 120.00075 * 179.72030 * 8 7 6 10 10 N 1.34779 * 119.99961 * 359.71965 * 8 7 6 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 N 1.46902 * 109.46901 * 180.02562 * 13 12 11 15 15 C 1.46907 * 110.99665 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47095 * 179.97438 * 15 14 13 17 17 O 1.21303 * 119.99942 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00172 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00010 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99731 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99713 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00428 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99709 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47405 * 59.99685 * 23 21 19 25 25 H 1.48501 * 109.47294 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47090 * 299.99690 * 23 21 19 27 27 C 1.38457 * 119.98506 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46937 * 60.00601 * 1 2 3 29 29 H 1.09002 * 109.47368 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47416 * 300.00705 * 1 2 3 31 31 H 1.07998 * 119.87870 * 359.95570 * 4 3 2 32 32 H 1.07996 * 119.89560 * 179.97438 * 5 4 3 33 33 H 1.08000 * 120.01080 * 180.25656 * 6 5 4 34 34 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 36 36 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 37 37 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 38 38 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 39 39 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 40 40 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 41 41 H 1.00898 * 111.00229 * 56.04458 * 14 13 12 42 42 H 1.08995 * 109.46981 * 299.99659 * 15 14 13 43 43 H 1.08993 * 109.47289 * 60.00009 * 15 14 13 44 44 H 0.96992 * 119.99793 * 0.02562 * 18 16 15 45 45 H 0.96999 * 120.00502 * 180.02562 * 22 21 19 46 46 H 1.08001 * 120.10192 * 0.05039 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3753 0.0005 5 6 1.9116 3.6099 0.0011 6 6 3.2892 3.6931 0.0064 7 6 4.0580 2.5283 0.0005 8 6 5.5341 2.6136 0.0011 9 8 6.2016 1.5978 0.0010 10 7 6.1396 3.8178 0.0016 11 6 7.6021 3.9023 0.0016 12 6 8.0280 5.3718 0.0029 13 6 9.5554 5.4601 0.0023 14 7 9.9643 6.8710 0.0041 15 6 11.4282 6.9949 0.0042 16 6 11.8090 8.4529 0.0055 17 8 10.9458 9.3052 0.0058 18 7 13.1085 8.8101 0.0063 19 6 13.4549 10.1366 0.0070 20 1 12.6863 10.8954 0.0073 21 6 14.7947 10.5047 0.0072 22 7 15.7298 9.5815 0.0074 23 14 15.2667 12.3121 0.0089 24 1 14.7145 12.9669 1.2219 25 1 16.7464 12.4374 0.0095 26 1 14.7144 12.9690 -1.2031 27 6 3.4287 1.2830 0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2111 2.3162 0.0002 32 1 1.3178 4.5119 0.0011 33 1 3.7720 4.6591 0.0110 34 1 5.6069 4.6284 0.0012 35 1 7.9945 3.4106 -0.8886 36 1 7.9945 3.4099 0.8914 37 1 7.6356 5.8646 -0.8867 38 1 7.6356 5.8630 0.8932 39 1 9.9482 4.9672 0.8916 40 1 9.9475 4.9689 -0.8884 41 1 9.5601 7.3637 0.7864 42 1 11.8336 6.5123 0.8935 43 1 11.8335 6.5147 -0.8864 44 1 13.7987 8.1286 0.0056 45 1 16.6652 9.8385 0.0079 46 1 4.0183 0.3782 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171903099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:38 Heat of formation + Delta-G solvation = -113.509495 kcal Electronic energy + Delta-G solvation = -26285.594723 eV Core-core repulsion = 22174.218848 eV Total energy + Delta-G solvation = -4111.375875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51121 -40.46839 -40.13787 -38.15876 -37.61309 -36.15405 -35.67529 -33.30080 -32.83199 -32.11378 -31.07480 -28.57740 -28.18461 -26.62136 -25.15136 -23.80227 -23.44418 -22.58308 -21.43487 -21.03856 -19.91035 -19.57363 -17.90029 -17.60113 -17.33523 -17.24436 -17.09949 -16.75580 -16.62066 -16.47905 -16.36263 -15.95765 -15.52562 -15.28763 -15.07209 -14.78534 -14.61059 -14.48449 -14.31502 -13.61991 -13.53101 -13.34091 -13.19522 -13.17087 -12.84688 -12.84347 -12.67265 -12.42027 -12.40426 -12.11439 -12.05801 -11.97436 -11.84288 -11.49046 -11.15669 -10.34369 -10.30825 -10.01081 -10.00569 -9.32433 -9.31590 -8.45763 -5.94875 -0.26743 0.35584 1.40908 1.42831 1.53811 1.76062 1.91761 2.06006 2.30050 2.41669 2.79070 2.95527 3.21662 3.53242 3.59920 3.77134 4.00238 4.03816 4.09001 4.14805 4.18098 4.24112 4.34466 4.40344 4.43084 4.48746 4.50440 4.57596 4.60331 4.70949 4.73651 4.79446 4.87042 5.13489 5.18086 5.20853 5.24465 5.33074 5.36887 5.41413 5.61161 5.89121 6.10410 6.36203 6.41877 6.45818 6.60730 7.09915 7.13030 7.56915 8.11922 8.71403 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.044085 B = 0.001277 C = 0.001243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.982964 B =21922.388770 C =22518.983645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.340 6.340 3 C 0.108 3.892 4 C -0.178 4.178 5 C -0.081 4.081 6 C -0.119 4.119 7 C -0.110 4.110 8 C 0.554 3.446 9 O -0.581 6.581 10 N -0.708 5.708 11 C 0.125 3.875 12 C -0.115 4.115 13 C 0.062 3.938 14 N -0.682 5.682 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.337 4.337 20 H 0.080 0.920 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.272 1.272 27 C -0.121 4.121 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.161 0.839 32 H 0.168 0.832 33 H 0.156 0.844 34 H 0.416 0.584 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.079 0.921 41 H 0.346 0.654 42 H 0.067 0.933 43 H 0.103 0.897 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.664 -16.925 0.978 35.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.255 6.255 3 C 0.063 3.937 4 C -0.197 4.197 5 C -0.099 4.099 6 C -0.138 4.138 7 C -0.114 4.114 8 C 0.342 3.658 9 O -0.462 6.462 10 N -0.360 5.360 11 C 0.001 3.999 12 C -0.153 4.153 13 C -0.067 4.067 14 N -0.315 5.315 15 C -0.069 4.069 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.210 5.210 19 C -0.466 4.466 20 H 0.098 0.902 21 C -0.211 4.211 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.141 4.141 28 H 0.088 0.912 29 H 0.133 0.867 30 H 0.088 0.912 31 H 0.178 0.822 32 H 0.185 0.815 33 H 0.173 0.827 34 H 0.255 0.745 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.164 0.836 42 H 0.085 0.915 43 H 0.121 0.879 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -30.489 -17.173 0.298 34.994 hybrid contribution 0.851 0.421 0.857 1.279 sum -29.639 -16.751 1.154 34.065 Atomic orbital electron populations 1.23403 0.75950 1.05725 1.02678 1.86081 1.23885 1.26762 1.88726 1.18984 0.91636 0.85558 0.97514 1.21828 1.01780 0.91653 1.04433 1.21351 0.94079 0.98368 0.96071 1.21553 0.94716 0.97456 1.00068 1.19615 0.91898 0.94404 1.05437 1.18542 0.88054 0.83426 0.75752 1.90765 1.67128 1.36542 1.51768 1.45783 1.08076 1.08158 1.74025 1.21269 0.79129 0.97180 1.02303 1.21590 0.95120 0.94357 1.04261 1.21907 0.95393 0.87773 1.01639 1.60057 1.06979 1.13078 1.51378 1.21534 0.90171 0.92028 1.03120 1.20894 0.82487 0.91986 0.82221 1.90485 1.49913 1.53860 1.56705 1.41932 1.06212 1.07860 1.64992 1.19661 0.92550 0.84294 1.50127 0.90215 1.26035 0.94760 1.04170 0.96173 1.69664 1.01216 1.35053 1.50222 0.84991 0.77349 0.77028 0.78993 1.19607 1.19535 1.19691 1.20449 0.92386 0.97963 1.03285 0.91154 0.86671 0.91151 0.82163 0.81457 0.82694 0.74539 0.91681 0.91677 0.90007 0.90136 0.94047 0.90304 0.83556 0.91543 0.87878 0.76984 0.91288 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 113.37 1.11 1.21 16 2 O -0.34 -5.41 10.49 -92.50 -0.97 -6.38 16 3 C 0.11 1.77 6.68 22.47 0.15 1.92 16 4 C -0.18 -1.77 9.03 22.42 0.20 -1.57 16 5 C -0.08 -0.65 10.03 22.22 0.22 -0.43 16 6 C -0.12 -1.32 9.54 22.54 0.21 -1.10 16 7 C -0.11 -2.03 5.87 -20.10 -0.12 -2.15 16 8 C 0.55 12.43 7.77 86.79 0.67 13.10 16 9 O -0.58 -18.08 16.35 -3.88 -0.06 -18.15 16 10 N -0.71 -11.49 5.51 -465.95 -2.57 -14.06 16 11 C 0.13 2.18 5.67 86.38 0.49 2.67 16 12 C -0.12 -1.89 5.59 30.59 0.17 -1.72 16 13 C 0.06 1.31 5.69 86.30 0.49 1.80 16 14 N -0.68 -20.33 6.13 -517.92 -3.17 -23.51 16 15 C 0.06 2.15 6.17 85.56 0.53 2.68 16 16 C 0.44 20.66 7.82 87.66 0.69 21.34 16 17 O -0.62 -34.22 15.78 -3.10 -0.05 -34.27 16 18 N -0.57 -29.38 5.29 -306.98 -1.62 -31.01 16 19 C -0.34 -19.14 9.68 84.04 0.81 -18.32 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 22 N -0.92 -49.73 13.05 21.66 0.28 -49.45 16 23 Si 0.99 42.75 29.55 68.60 2.03 44.77 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 C -0.12 -2.52 9.53 22.63 0.22 -2.30 16 28 H 0.07 0.22 7.66 -2.39 -0.02 0.20 16 29 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.21 7.66 -2.39 -0.02 0.19 16 31 H 0.16 0.61 6.28 -2.91 -0.02 0.60 16 32 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 33 H 0.16 0.81 6.40 -2.91 -0.02 0.79 16 34 H 0.42 4.13 6.50 -92.71 -0.60 3.53 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.35 10.63 8.43 -89.70 -0.76 9.87 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.40 19.32 7.90 -92.71 -0.73 18.58 16 45 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 46 H 0.12 2.94 7.65 -2.91 -0.02 2.91 16 Total: -1.00 -78.38 393.12 -0.87 -79.25 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -1.06 Total: 35.81 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 6.32 Total: 16.98 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -7.08 Total: -118.02 kcal Atomic # 8 Polarization: -57.72 SS G_CDS: -1.08 Total: -58.80 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -78.38 -0.87 -79.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171903099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.255 kcal (2) G-P(sol) polarization free energy of solvation -78.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds