Wall clock time and date at job start Tue Mar 31 2020 18:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35683 * 116.99994 * 2 1 4 4 C 1.38917 * 119.68447 * 179.97438 * 3 2 1 5 5 C 1.38379 * 119.11059 * 179.74312 * 4 3 2 6 6 C 1.38828 * 118.48656 * 0.54638 * 5 4 3 7 7 C 1.50695 * 120.35668 * 179.73094 * 6 5 4 8 8 O 1.42898 * 109.47039 * 269.71761 * 7 6 5 9 9 C 1.42900 * 113.99912 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47299 * 180.02562 * 9 8 7 11 11 O 1.21286 * 119.99620 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00229 * 179.97438 * 10 9 8 13 13 C 1.47423 * 125.64710 * 0.03243 * 12 10 9 14 14 C 1.54903 * 104.83345 * 155.83340 * 13 12 10 15 15 C 1.55160 * 101.58514 * 37.00430 * 14 13 12 16 16 H 1.09006 * 110.71536 * 83.03783 * 15 14 13 17 17 N 1.46490 * 110.72259 * 206.13520 * 15 14 13 18 18 C 1.36935 * 120.00121 * 204.99536 * 17 15 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46653 * 299.99639 * 22 20 18 25 25 H 1.48495 * 109.47483 * 60.00002 * 22 20 18 26 26 C 1.47020 * 125.64728 * 179.97438 * 12 10 9 27 27 C 1.38051 * 119.28413 * 359.45600 * 6 5 4 28 28 N 1.31960 * 120.84059 * 0.27438 * 27 6 5 29 29 H 1.08996 * 109.46900 * 300.00285 * 1 2 3 30 30 H 1.08996 * 109.46836 * 60.00005 * 1 2 3 31 31 H 1.08989 * 109.47048 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.44586 * 0.05192 * 4 3 2 33 33 H 1.08000 * 120.75537 * 180.29861 * 5 4 3 34 34 H 1.09004 * 109.47043 * 149.72279 * 7 6 5 35 35 H 1.08991 * 109.47337 * 29.72164 * 7 6 5 36 36 H 1.09008 * 109.47068 * 60.00460 * 9 8 7 37 37 H 1.09001 * 109.47311 * 300.00586 * 9 8 7 38 38 H 1.08994 * 110.36976 * 36.98820 * 13 12 10 39 39 H 1.09003 * 110.36333 * 274.66853 * 13 12 10 40 40 H 1.09000 * 111.00480 * 278.93284 * 14 13 12 41 41 H 1.09001 * 111.00850 * 155.08026 * 14 13 12 42 42 H 0.97000 * 120.00577 * 25.00135 * 17 15 14 43 43 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 44 44 H 1.08999 * 109.88183 * 61.68656 * 26 12 10 45 45 H 1.08992 * 109.88824 * 300.51994 * 26 12 10 46 46 H 1.08007 * 119.58242 * 180.30178 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0485 2.5132 -0.0049 6 6 3.2505 3.6492 0.0009 7 6 3.8768 5.0198 0.0015 8 8 4.0742 5.4528 1.3489 9 6 4.6668 6.7482 1.4623 10 6 4.8283 7.1011 2.9185 11 8 4.4715 6.3199 3.7749 12 7 5.3700 8.2843 3.2691 13 6 5.8447 9.3222 2.3358 14 6 5.7753 10.6427 3.1427 15 6 6.2005 10.1664 4.5568 16 1 7.2866 10.1224 4.6385 17 7 5.6400 11.0421 5.5889 18 6 6.2562 11.1458 6.8074 19 1 7.1556 10.5824 7.0074 20 6 5.7249 11.9751 7.7856 21 7 4.6285 12.6614 7.5420 22 14 6.5660 12.1171 9.4475 23 1 5.8057 13.0587 10.3081 24 1 6.6109 10.7815 10.0951 25 1 7.9493 12.6235 9.2606 26 6 5.5845 8.7542 4.6455 27 6 1.8771 3.5097 0.0005 28 7 1.3186 2.3141 0.0000 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 4.0229 0.3696 0.0001 33 1 5.1254 2.5947 -0.0095 34 1 3.2185 5.7203 -0.5124 35 1 4.8374 4.9806 -0.5120 36 1 4.0252 7.4848 0.9785 37 1 5.6439 6.7444 0.9792 38 1 5.1925 9.3755 1.4641 39 1 6.8709 9.1174 2.0309 40 1 4.7609 11.0412 3.1533 41 1 6.4781 11.3777 2.7503 42 1 4.8324 11.5484 5.4093 43 1 4.1920 12.5879 6.6789 44 1 6.2694 8.0831 5.1639 45 1 4.6329 8.7974 5.1751 46 1 1.2517 4.3903 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183611891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:21 Heat of formation + Delta-G solvation = -54.365377 kcal Electronic energy + Delta-G solvation = -27432.576516 eV Core-core repulsion = 23323.765322 eV Total energy + Delta-G solvation = -4108.811194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01792 -39.92409 -38.66751 -37.85515 -36.95063 -34.45999 -33.13102 -32.02330 -31.67203 -29.59287 -28.99979 -27.92342 -26.81116 -25.70863 -23.85795 -23.75414 -22.66443 -22.31732 -20.41331 -19.26898 -18.78472 -17.60558 -17.52978 -17.44134 -16.74447 -16.47894 -16.32650 -15.89455 -15.58026 -15.02733 -14.86687 -14.65717 -14.56439 -14.00114 -13.73317 -13.70797 -13.58782 -13.32605 -13.14377 -12.94384 -12.52391 -12.42405 -12.21990 -11.90992 -11.82439 -11.55498 -11.48485 -11.27708 -10.75644 -10.69605 -10.38096 -10.28339 -10.12658 -10.01708 -9.92581 -9.67973 -9.25517 -9.03501 -8.84524 -8.44120 -7.18908 -6.18716 -3.21228 0.70917 0.86685 2.67513 2.71177 2.74272 3.34764 3.49542 3.53140 3.70199 3.83698 3.94906 4.36713 4.44363 4.55469 4.60137 4.61824 4.75619 4.77937 4.85859 4.91044 4.93705 4.95933 4.99617 5.04704 5.13810 5.21798 5.26511 5.36042 5.40457 5.51585 5.59077 5.63482 5.80273 5.86609 5.89786 6.01811 6.16632 6.22672 6.37435 6.52740 6.74640 6.77580 6.83410 7.45418 7.66203 7.72818 8.30249 8.66792 9.10110 9.96753 10.09269 11.28979 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022374 B = 0.001707 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.179242 B =16396.228610 C =17007.431264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.309 6.309 3 C 0.324 3.676 4 C -0.193 4.193 5 C -0.017 4.017 6 C -0.179 4.179 7 C 0.111 3.889 8 O -0.358 6.358 9 C 0.050 3.950 10 C 0.522 3.478 11 O -0.523 6.523 12 N -0.614 5.614 13 C 0.100 3.900 14 C -0.143 4.143 15 C 0.177 3.823 16 H 0.070 0.930 17 N -0.723 5.723 18 C -0.342 4.342 19 H 0.068 0.932 20 C -0.040 4.040 21 N -0.939 5.939 22 Si 1.080 2.920 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.294 1.294 26 C 0.085 3.915 27 C 0.165 3.835 28 N -0.542 5.542 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.370 0.630 43 H 0.255 0.745 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 -18.462 -23.664 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.215 6.215 3 C 0.145 3.855 4 C -0.213 4.213 5 C -0.043 4.043 6 C -0.182 4.182 7 C 0.034 3.966 8 O -0.276 6.276 9 C -0.030 4.030 10 C 0.309 3.691 11 O -0.398 6.398 12 N -0.351 5.351 13 C -0.023 4.023 14 C -0.182 4.182 15 C 0.065 3.935 16 H 0.088 0.912 17 N -0.364 5.364 18 C -0.472 4.472 19 H 0.086 0.914 20 C -0.238 4.238 21 N -0.583 5.583 22 Si 0.911 3.089 23 H -0.210 1.210 24 H -0.221 1.221 25 H -0.221 1.221 26 C -0.040 4.040 27 C 0.009 3.991 28 N -0.265 5.265 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.204 0.796 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.813 -18.800 -21.461 28.670 hybrid contribution 0.540 -0.323 -1.807 1.914 sum -2.272 -19.124 -23.269 30.204 Atomic orbital electron populations 1.22882 0.77018 1.03030 1.02637 1.86240 1.23128 1.24548 1.87627 1.19923 0.89500 0.84758 0.91314 1.21062 0.92008 0.99575 1.08670 1.21345 1.00672 0.90635 0.91632 1.20369 0.94848 0.95237 1.07708 1.21165 0.99379 0.91756 0.84303 1.88116 1.82185 1.32106 1.25191 1.22202 0.99101 0.86568 0.95146 1.19819 0.78247 0.80805 0.90241 1.90746 1.48614 1.48548 1.51892 1.48514 1.61025 1.16133 1.09394 1.22345 0.99247 0.87954 0.92796 1.23107 1.02773 0.95567 0.96758 1.21149 0.96901 0.87917 0.87545 0.91159 1.42374 1.30934 1.50738 1.12370 1.20070 1.09163 1.26352 0.91628 0.91449 1.25830 0.98357 0.96167 1.03437 1.70901 1.19280 1.43206 1.24948 0.83242 0.74640 0.75998 0.75062 1.20971 1.22103 1.22120 1.23220 1.01738 0.98120 0.80921 1.22334 0.92100 0.93724 0.90921 1.67370 1.40763 0.98729 1.19640 0.92108 0.92234 0.88550 0.83845 0.83844 0.91846 0.91945 0.90280 0.90319 0.91121 0.91227 0.90675 0.89891 0.79611 0.93345 0.92209 0.91102 0.82151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.31 -3.08 10.48 -18.75 -0.20 -3.28 16 3 C 0.32 3.46 7.49 -17.12 -0.13 3.33 16 4 C -0.19 -1.74 10.04 -39.28 -0.39 -2.13 16 5 C -0.02 -0.15 9.85 -39.31 -0.39 -0.54 16 6 C -0.18 -1.65 5.53 -104.47 -0.58 -2.23 16 7 C 0.11 0.89 6.09 36.00 0.22 1.11 16 8 O -0.36 -4.46 9.86 -55.14 -0.54 -5.01 16 9 C 0.05 0.54 5.42 36.01 0.20 0.73 16 10 C 0.52 8.42 7.93 -10.99 -0.09 8.34 16 11 O -0.52 -11.11 16.83 -14.36 -0.24 -11.35 16 12 N -0.61 -9.45 3.33 -170.53 -0.57 -10.01 16 13 C 0.10 1.13 6.69 -2.53 -0.02 1.11 16 14 C -0.14 -1.99 6.71 -24.58 -0.17 -2.16 16 15 C 0.18 3.31 3.61 -66.10 -0.24 3.07 16 16 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 17 N -0.72 -17.33 5.15 -51.65 -0.27 -17.60 16 18 C -0.34 -9.34 9.96 -15.06 -0.15 -9.49 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.04 -1.13 5.50 -17.43 -0.10 -1.23 16 21 N -0.94 -28.53 13.70 55.49 0.76 -27.77 16 22 Si 1.08 25.57 29.92 -169.99 -5.09 20.49 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.09 1.61 6.62 -3.06 -0.02 1.59 16 27 C 0.17 1.62 10.85 -17.57 -0.19 1.43 16 28 N -0.54 -6.00 9.22 -13.32 -0.12 -6.12 16 29 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 30 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 35 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 36 H 0.08 0.65 7.85 -51.92 -0.41 0.24 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.59 7.48 -51.93 -0.39 0.21 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.10 8.01 -51.93 -0.42 0.68 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.37 9.14 6.59 -40.82 -0.27 8.87 16 43 H 0.26 7.60 6.77 -40.82 -0.28 7.32 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.07 1.56 8.03 -51.93 -0.42 1.14 16 46 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -36.88 390.38 -8.23 -45.11 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.87 Total: 5.38 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -0.99 Total: 4.27 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.20 Total: -61.50 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.98 Total: -19.63 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.09 Total: 20.49 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.88 -8.23 -45.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183611891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.253 kcal (2) G-P(sol) polarization free energy of solvation -36.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds