Wall clock time and date at job start Tue Mar 31 2020 18:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35683 * 116.99994 * 2 1 4 4 C 1.38917 * 119.68447 * 179.97438 * 3 2 1 5 5 C 1.38379 * 119.11059 * 179.74312 * 4 3 2 6 6 C 1.38828 * 118.48656 * 0.54638 * 5 4 3 7 7 C 1.50695 * 120.35668 * 179.73094 * 6 5 4 8 8 O 1.42898 * 109.47039 * 269.71761 * 7 6 5 9 9 C 1.42900 * 113.99912 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47299 * 180.02562 * 9 8 7 11 11 O 1.21286 * 119.99620 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00229 * 179.97438 * 10 9 8 13 13 C 1.47423 * 125.64710 * 0.03243 * 12 10 9 14 14 C 1.54903 * 104.83345 * 155.83340 * 13 12 10 15 15 C 1.55160 * 101.58514 * 37.00430 * 14 13 12 16 16 H 1.09006 * 110.71536 * 83.03783 * 15 14 13 17 17 N 1.46490 * 110.72259 * 206.13520 * 15 14 13 18 18 C 1.36935 * 120.00121 * 204.99536 * 17 15 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46653 * 299.99639 * 22 20 18 25 25 H 1.48495 * 109.47483 * 60.00002 * 22 20 18 26 26 C 1.47020 * 125.64728 * 179.97438 * 12 10 9 27 27 C 1.38051 * 119.28413 * 359.45600 * 6 5 4 28 28 N 1.31960 * 120.84059 * 0.27438 * 27 6 5 29 29 H 1.08996 * 109.46900 * 300.00285 * 1 2 3 30 30 H 1.08996 * 109.46836 * 60.00005 * 1 2 3 31 31 H 1.08989 * 109.47048 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.44586 * 0.05192 * 4 3 2 33 33 H 1.08000 * 120.75537 * 180.29861 * 5 4 3 34 34 H 1.09004 * 109.47043 * 149.72279 * 7 6 5 35 35 H 1.08991 * 109.47337 * 29.72164 * 7 6 5 36 36 H 1.09008 * 109.47068 * 60.00460 * 9 8 7 37 37 H 1.09001 * 109.47311 * 300.00586 * 9 8 7 38 38 H 1.08994 * 110.36976 * 36.98820 * 13 12 10 39 39 H 1.09003 * 110.36333 * 274.66853 * 13 12 10 40 40 H 1.09000 * 111.00480 * 278.93284 * 14 13 12 41 41 H 1.09001 * 111.00850 * 155.08026 * 14 13 12 42 42 H 0.97000 * 120.00577 * 25.00135 * 17 15 14 43 43 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 44 44 H 1.08999 * 109.88183 * 61.68656 * 26 12 10 45 45 H 1.08992 * 109.88824 * 300.51994 * 26 12 10 46 46 H 1.08007 * 119.58242 * 180.30178 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0485 2.5132 -0.0049 6 6 3.2505 3.6492 0.0009 7 6 3.8768 5.0198 0.0015 8 8 4.0742 5.4528 1.3489 9 6 4.6668 6.7482 1.4623 10 6 4.8283 7.1011 2.9185 11 8 4.4715 6.3199 3.7749 12 7 5.3700 8.2843 3.2691 13 6 5.8447 9.3222 2.3358 14 6 5.7753 10.6427 3.1427 15 6 6.2005 10.1664 4.5568 16 1 7.2866 10.1224 4.6385 17 7 5.6400 11.0421 5.5889 18 6 6.2562 11.1458 6.8074 19 1 7.1556 10.5824 7.0074 20 6 5.7249 11.9751 7.7856 21 7 4.6285 12.6614 7.5420 22 14 6.5660 12.1171 9.4475 23 1 5.8057 13.0587 10.3081 24 1 6.6109 10.7815 10.0951 25 1 7.9493 12.6235 9.2606 26 6 5.5845 8.7542 4.6455 27 6 1.8771 3.5097 0.0005 28 7 1.3186 2.3141 0.0000 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 4.0229 0.3696 0.0001 33 1 5.1254 2.5947 -0.0095 34 1 3.2185 5.7203 -0.5124 35 1 4.8374 4.9806 -0.5120 36 1 4.0252 7.4848 0.9785 37 1 5.6439 6.7444 0.9792 38 1 5.1925 9.3755 1.4641 39 1 6.8709 9.1174 2.0309 40 1 4.7609 11.0412 3.1533 41 1 6.4781 11.3777 2.7503 42 1 4.8324 11.5484 5.4093 43 1 4.1920 12.5879 6.6789 44 1 6.2694 8.0831 5.1639 45 1 4.6329 8.7974 5.1751 46 1 1.2517 4.3903 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183611891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:20 Heat of formation + Delta-G solvation = -82.196223 kcal Electronic energy + Delta-G solvation = -27433.783352 eV Core-core repulsion = 23323.765322 eV Total energy + Delta-G solvation = -4110.018030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.69378 -41.13470 -39.44660 -38.88058 -38.04958 -36.27404 -33.83361 -33.43688 -32.61200 -31.06269 -30.10998 -28.68313 -27.95274 -26.50001 -25.60146 -24.49787 -23.98180 -22.97892 -21.85444 -20.47260 -19.50412 -19.45493 -18.48573 -18.26724 -17.74728 -17.44694 -17.04247 -16.90122 -16.54427 -16.42089 -15.96100 -15.71516 -15.54758 -15.38805 -15.09144 -14.79160 -14.45292 -14.35444 -14.20465 -13.93110 -13.59526 -13.39400 -13.07271 -12.95898 -12.85107 -12.80580 -12.57198 -12.44089 -12.39965 -12.14857 -11.89512 -11.73328 -11.28279 -11.06653 -10.97883 -10.86604 -10.82496 -10.59146 -9.73718 -9.53757 -9.21781 -8.42353 -5.38426 0.01339 0.20690 1.52443 1.57913 1.66002 1.68716 1.83727 2.08629 2.57034 2.69594 3.09224 3.28402 3.33782 3.50473 3.58494 3.77993 3.86493 3.90293 3.96528 4.01549 4.14950 4.20986 4.23678 4.28392 4.32748 4.37659 4.40577 4.44356 4.50283 4.52680 4.66286 4.70904 4.75763 4.81683 4.88432 4.95517 5.13124 5.15608 5.23555 5.30334 5.40564 5.58298 6.06135 6.15559 6.46594 6.51253 6.75394 7.03720 7.10027 7.93637 8.03340 9.09094 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022374 B = 0.001707 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.179242 B =16396.228610 C =17007.431264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.321 6.321 3 C 0.301 3.699 4 C -0.199 4.199 5 C -0.020 4.020 6 C -0.187 4.187 7 C 0.110 3.890 8 O -0.398 6.398 9 C 0.061 3.939 10 C 0.511 3.489 11 O -0.590 6.590 12 N -0.613 5.613 13 C 0.104 3.896 14 C -0.133 4.133 15 C 0.168 3.832 16 H 0.073 0.927 17 N -0.738 5.738 18 C -0.338 4.338 19 H 0.069 0.931 20 C -0.101 4.101 21 N -0.973 5.973 22 Si 1.126 2.874 23 H -0.293 1.293 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.096 3.904 27 C 0.148 3.852 28 N -0.563 5.563 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.123 0.877 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.363 0.637 43 H 0.245 0.755 44 H 0.041 0.959 45 H 0.028 0.972 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.009 -18.474 -26.576 32.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.228 6.228 3 C 0.122 3.878 4 C -0.220 4.220 5 C -0.045 4.045 6 C -0.189 4.189 7 C 0.034 3.966 8 O -0.317 6.317 9 C -0.018 4.018 10 C 0.301 3.699 11 O -0.470 6.470 12 N -0.348 5.348 13 C -0.017 4.017 14 C -0.171 4.171 15 C 0.058 3.942 16 H 0.091 0.909 17 N -0.378 5.378 18 C -0.469 4.469 19 H 0.087 0.913 20 C -0.292 4.292 21 N -0.620 5.620 22 Si 0.950 3.050 23 H -0.219 1.219 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.031 4.031 27 C -0.007 4.007 28 N -0.287 5.287 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.178 0.822 33 H 0.187 0.813 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.125 0.875 42 H 0.195 0.805 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.950 -18.823 -24.465 30.883 hybrid contribution -0.034 -0.401 -0.962 1.043 sum -0.983 -19.224 -25.427 31.891 Atomic orbital electron populations 1.23036 0.75952 1.04651 1.02106 1.86220 1.24312 1.24553 1.87749 1.20270 0.90377 0.84899 0.92228 1.21364 0.91616 1.00749 1.08232 1.21723 1.01980 0.90162 0.90602 1.20654 0.94681 0.96479 1.07103 1.21399 1.01355 0.91149 0.82683 1.88064 1.82764 1.32942 1.27973 1.22265 1.02023 0.86935 0.90602 1.21024 0.76534 0.79833 0.92484 1.90713 1.51357 1.50623 1.54291 1.48580 1.60744 1.17096 1.08373 1.22675 1.02159 0.84456 0.92453 1.23055 1.02739 0.97768 0.93559 1.21391 0.96678 0.86931 0.89199 0.90902 1.42543 1.30816 1.51698 1.12747 1.20416 1.08725 1.24911 0.92875 0.91304 1.27177 0.98640 0.96535 1.06880 1.71001 1.20918 1.45342 1.24774 0.82656 0.74685 0.76203 0.71422 1.21942 1.20999 1.19732 1.22721 0.98949 0.98178 0.83258 1.22695 0.93066 0.93795 0.91177 1.67341 1.41584 0.99345 1.20394 0.93103 0.92264 0.85873 0.82218 0.81307 0.89471 0.89021 0.86763 0.86195 0.86622 0.87965 0.91526 0.87519 0.80477 0.94449 0.94100 0.95379 0.80836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.38 113.37 1.18 1.72 16 2 O -0.32 -6.46 10.48 -90.01 -0.94 -7.41 16 3 C 0.30 6.45 7.49 84.79 0.63 7.08 16 4 C -0.20 -3.44 10.04 22.47 0.23 -3.21 16 5 C -0.02 -0.29 9.85 22.44 0.22 -0.07 16 6 C -0.19 -3.08 5.53 -19.77 -0.11 -3.19 16 7 C 0.11 1.35 6.09 71.23 0.43 1.78 16 8 O -0.40 -8.77 9.86 -129.94 -1.28 -10.05 16 9 C 0.06 1.04 5.42 71.24 0.39 1.43 16 10 C 0.51 15.68 7.93 87.66 0.69 16.38 16 11 O -0.59 -25.63 16.83 15.99 0.27 -25.36 16 12 N -0.61 -17.69 3.33 -811.82 -2.70 -20.39 16 13 C 0.10 1.84 6.69 86.85 0.58 2.42 16 14 C -0.13 -3.32 6.71 31.98 0.21 -3.10 16 15 C 0.17 6.21 3.61 46.18 0.17 6.38 16 16 H 0.07 2.65 8.09 -2.38 -0.02 2.63 16 17 N -0.74 -36.00 5.15 -317.33 -1.63 -37.63 16 18 C -0.34 -18.74 9.96 84.03 0.84 -17.90 16 19 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 20 C -0.10 -5.82 5.50 84.86 0.47 -5.35 16 21 N -0.97 -60.61 13.70 21.65 0.30 -60.32 16 22 Si 1.13 51.94 29.92 68.60 2.05 54.00 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 C 0.10 3.69 6.62 86.73 0.57 4.26 16 27 C 0.15 2.80 10.85 84.63 0.92 3.72 16 28 N -0.56 -12.55 9.22 -308.93 -2.85 -15.40 16 29 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 30 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 31 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 34 H 0.09 0.64 8.09 -2.38 -0.02 0.62 16 35 H 0.09 0.59 8.09 -2.39 -0.02 0.57 16 36 H 0.11 1.19 7.85 -2.38 -0.02 1.17 16 37 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.12 1.15 7.48 -2.39 -0.02 1.13 16 39 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.81 8.01 -2.39 -0.02 1.79 16 41 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.36 18.49 6.59 -92.71 -0.61 17.88 16 43 H 0.25 15.13 6.77 -92.71 -0.63 14.50 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.03 1.30 8.03 -2.39 -0.02 1.28 16 46 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -86.87 390.38 1.16 -85.71 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.52 Total: 24.52 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 7.42 Total: 12.33 kcal Atomic # 7 Polarization: -126.86 SS G_CDS: -6.88 Total: -133.74 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -1.96 Total: -42.82 kcal Atomic # 14 Polarization: 51.94 SS G_CDS: 2.05 Total: 54.00 kcal Total: -86.87 1.16 -85.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183611891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.516 kcal (2) G-P(sol) polarization free energy of solvation -86.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds