Wall clock time and date at job start Tue Mar 31 2020 18:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 120.00166 * 2 1 4 4 H 1.07998 * 119.99970 * 149.89618 * 3 2 1 5 5 C 1.38817 * 119.99815 * 329.90123 * 3 2 1 6 6 N 1.31620 * 119.99638 * 151.71301 * 5 3 2 7 7 Si 1.86796 * 120.00155 * 331.71423 * 5 3 2 8 8 H 1.48503 * 109.47167 * 95.38576 * 7 5 3 9 9 H 1.48501 * 109.47258 * 215.39045 * 7 5 3 10 10 H 1.48508 * 109.47087 * 335.38645 * 7 5 3 11 11 C 1.46492 * 120.00145 * 180.02562 * 2 1 3 12 12 H 1.08994 * 110.64646 * 178.31303 * 11 2 1 13 13 C 1.55449 * 110.85968 * 55.08697 * 11 2 1 14 14 C 1.54913 * 101.45254 * 206.07807 * 13 11 2 15 15 N 1.47427 * 104.92894 * 37.00143 * 14 13 11 16 16 C 1.34773 * 125.64644 * 155.79627 * 15 14 13 17 17 O 1.21278 * 119.99709 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00220 * 0.02663 * 16 15 14 19 19 O 1.42895 * 109.47514 * 179.97438 * 18 16 15 20 20 C 1.42899 * 114.00097 * 179.97438 * 19 18 16 21 21 C 1.50705 * 109.46867 * 180.02562 * 20 19 18 22 22 C 1.38820 * 120.75983 * 90.00257 * 21 20 19 23 23 C 1.38051 * 119.29106 * 180.02562 * 22 21 20 24 24 N 1.31964 * 120.83104 * 359.97438 * 23 22 21 25 25 C 1.32243 * 121.65331 * 0.02562 * 24 23 22 26 26 O 1.35673 * 119.68922 * 180.02562 * 25 24 23 27 27 C 1.38380 * 120.75597 * 269.72011 * 21 20 19 28 28 C 1.47021 * 108.70202 * 335.81973 * 15 14 13 29 29 H 1.08998 * 109.46926 * 275.27030 * 1 2 3 30 30 H 1.09007 * 109.46859 * 35.26832 * 1 2 3 31 31 H 1.09002 * 109.47472 * 155.27088 * 1 2 3 32 32 H 0.96997 * 119.99578 * 179.97438 * 6 5 3 33 33 H 1.09001 * 111.11760 * 88.02749 * 13 11 2 34 34 H 1.08997 * 111.01375 * 324.08607 * 13 11 2 35 35 H 1.09002 * 110.36468 * 278.11010 * 14 13 11 36 36 H 1.09000 * 110.36890 * 155.90125 * 14 13 11 37 37 H 1.09006 * 109.47282 * 300.00491 * 18 16 15 38 38 H 1.09004 * 109.47233 * 59.99657 * 18 16 15 39 39 H 1.08997 * 109.47161 * 299.99992 * 20 19 18 40 40 H 1.08994 * 109.47132 * 60.00686 * 20 19 18 41 41 H 1.08001 * 120.35772 * 0.02562 * 22 21 20 42 42 H 1.08001 * 119.58445 * 180.02562 * 23 22 21 43 43 H 0.96703 * 113.99699 * 90.00069 * 26 25 24 44 44 H 1.08007 * 120.44061 * 0.02562 * 27 21 20 45 45 H 1.08997 * 109.88099 * 120.47403 * 28 15 14 46 46 H 1.09005 * 109.88089 * 241.63718 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1205 1.2490 0.4691 5 6 1.5960 2.3071 -0.6029 6 7 1.9096 3.5097 -0.1697 7 14 0.4059 2.1089 -2.0289 8 1 -0.9883 2.1423 -1.5185 9 1 0.6051 3.2168 -2.9976 10 1 0.6547 0.8100 -2.7045 11 6 2.1975 -1.2686 -0.0006 12 1 3.2725 -1.0917 -0.0305 13 6 1.7543 -2.1632 -1.1921 14 6 2.0705 -3.5788 -0.6483 15 7 1.7365 -3.5179 0.7864 16 6 1.4100 -4.5704 1.5622 17 8 1.1524 -4.4022 2.7353 18 6 1.3650 -5.9563 0.9721 19 8 0.9976 -6.8940 1.9858 20 6 0.9250 -8.2459 1.5283 21 6 0.5312 -9.1432 2.6733 22 6 -0.8049 -9.4112 2.9382 23 6 -1.1314 -10.2370 3.9951 24 7 -0.1913 -10.7714 4.7514 25 6 1.0919 -10.5399 4.5307 26 8 2.0254 -11.1106 5.3330 27 6 1.4934 -9.7234 3.4810 28 6 1.8182 -2.1187 1.2304 29 1 -0.3633 0.0944 1.0233 30 1 -0.3633 0.8391 -0.5934 31 1 -0.3634 -0.9334 -0.4299 32 1 1.5230 4.2931 -0.5912 33 1 2.3414 -1.9475 -2.0848 34 1 0.6885 -2.0500 -1.3906 35 1 3.1274 -3.8093 -0.7823 36 1 1.4538 -4.3245 -1.1500 37 1 0.6307 -5.9848 0.1669 38 1 2.3474 -6.2151 0.5770 39 1 0.1810 -8.3216 0.7353 40 1 1.8979 -8.5522 1.1442 41 1 -1.5807 -8.9783 2.3240 42 1 -2.1694 -10.4491 4.2052 43 1 2.3299 -11.9763 5.0280 44 1 2.5424 -9.5396 3.3008 45 1 0.8526 -1.7965 1.6200 46 1 2.5833 -2.0181 2.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190921365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:14 Heat of formation + Delta-G solvation = -32.637032 kcal Electronic energy + Delta-G solvation = -27980.910905 eV Core-core repulsion = 23873.041923 eV Total energy + Delta-G solvation = -4107.868982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.90317 -40.02351 -38.43968 -37.56846 -37.09470 -35.03634 -33.64770 -31.94216 -30.68170 -30.45107 -29.28146 -27.97599 -26.59486 -26.12948 -23.90633 -23.54594 -22.56516 -22.49074 -19.62691 -19.33915 -18.85152 -17.55285 -17.43798 -17.13523 -16.73407 -16.54227 -16.42460 -16.03786 -15.96096 -15.27364 -15.05776 -14.64969 -14.27083 -14.01159 -13.57145 -13.53237 -13.22739 -13.17627 -12.90953 -12.58538 -12.43983 -12.33059 -12.18677 -12.12915 -12.04898 -11.95314 -11.54086 -11.07681 -10.94301 -10.58544 -10.27797 -10.27168 -10.16147 -10.02490 -9.88593 -9.71254 -9.58581 -9.35771 -8.55890 -8.51272 -7.07083 -6.08965 -3.41162 0.57147 0.63863 2.60403 2.63195 3.08125 3.25957 3.30602 3.41591 3.45110 3.70608 4.16321 4.20973 4.45260 4.48598 4.56924 4.61018 4.68816 4.70959 4.75167 4.85811 4.87736 4.97662 5.06262 5.09685 5.25781 5.28912 5.35152 5.41833 5.53145 5.65404 5.78659 5.78804 6.03180 6.05537 6.14520 6.24798 6.32213 6.37166 6.54868 6.61781 6.66915 6.73150 7.05565 7.48513 7.58044 7.88337 8.21454 8.25128 8.85334 9.61985 9.97729 11.06394 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030718 B = 0.001851 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.284611 B =15119.827504 C =15216.990289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.595 5.595 3 C -0.276 4.276 4 H 0.084 0.916 5 C 0.035 3.965 6 N -0.890 5.890 7 Si 0.878 3.122 8 H -0.286 1.286 9 H -0.303 1.303 10 H -0.272 1.272 11 C 0.173 3.827 12 H 0.090 0.910 13 C -0.158 4.158 14 C 0.098 3.902 15 N -0.614 5.614 16 C 0.524 3.476 17 O -0.522 6.522 18 C 0.050 3.950 19 O -0.355 6.355 20 C 0.099 3.901 21 C -0.029 4.029 22 C -0.160 4.160 23 C 0.122 3.878 24 N -0.500 5.500 25 C 0.308 3.692 26 O -0.481 6.481 27 C -0.163 4.163 28 C 0.091 3.909 29 H 0.021 0.979 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.142 0.858 42 H 0.164 0.836 43 H 0.400 0.600 44 H 0.143 0.857 45 H 0.072 0.928 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 -29.950 -2.025 30.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.317 5.317 3 C -0.404 4.404 4 H 0.101 0.899 5 C -0.166 4.166 6 N -0.530 5.530 7 Si 0.709 3.291 8 H -0.215 1.215 9 H -0.231 1.231 10 H -0.197 1.197 11 C 0.063 3.937 12 H 0.108 0.892 13 C -0.198 4.198 14 C -0.026 4.026 15 N -0.350 5.350 16 C 0.311 3.689 17 O -0.397 6.397 18 C -0.030 4.030 19 O -0.273 6.273 20 C 0.023 3.977 21 C -0.037 4.037 22 C -0.180 4.180 23 C -0.034 4.034 24 N -0.220 5.220 25 C 0.129 3.871 26 O -0.287 6.287 27 C -0.184 4.184 28 C -0.033 4.033 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.160 0.840 42 H 0.181 0.819 43 H 0.257 0.743 44 H 0.161 0.839 45 H 0.090 0.910 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.252 -29.681 -0.106 29.766 hybrid contribution -0.342 0.074 -2.089 2.119 sum -2.594 -29.606 -2.195 29.801 Atomic orbital electron populations 1.21343 0.84568 0.98730 0.98967 1.44039 1.00624 1.01343 1.85659 1.18787 1.04714 0.84963 1.31930 0.89854 1.25281 0.98128 0.94928 0.98246 1.69951 1.45614 0.97764 1.39669 0.86971 0.80455 0.77153 0.84506 1.21510 1.23081 1.19688 1.21489 0.97058 0.85325 0.89817 0.89237 1.23476 1.02721 0.93142 1.00449 1.22392 1.00243 0.99280 0.80639 1.48440 1.68168 1.07651 1.10741 1.19725 0.77940 0.84963 0.86268 1.90750 1.47932 1.85113 1.15935 1.22219 1.01340 0.88287 0.91159 1.88099 1.90373 1.14633 1.34174 1.21356 1.01162 0.81695 0.93534 1.19858 0.93221 0.94780 0.95823 1.22129 0.96447 0.99528 0.99854 1.22543 0.98367 0.92471 0.90068 1.67161 1.01417 1.24700 1.28709 1.19129 0.86200 0.93737 0.88000 1.84822 1.54738 1.38223 1.50961 1.22055 1.01531 1.00124 0.94726 1.22734 1.02461 0.78713 0.99397 0.96032 0.94083 0.94554 0.92592 0.89874 0.90692 0.91141 0.91324 0.90142 0.90112 0.91348 0.91490 0.83985 0.81859 0.74281 0.83921 0.90990 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.30 8.52 59.85 0.51 2.81 16 2 N -0.60 -13.40 2.61 -171.21 -0.45 -13.84 16 3 C -0.28 -7.40 9.87 -15.05 -0.15 -7.55 16 4 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 5 C 0.04 0.99 5.26 -17.43 -0.09 0.89 16 6 N -0.89 -26.49 13.97 55.49 0.78 -25.71 16 7 Si 0.88 21.41 25.14 -169.99 -4.27 17.14 16 8 H -0.29 -6.87 6.61 56.52 0.37 -6.50 16 9 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 11 C 0.17 3.09 3.44 -65.94 -0.23 2.86 16 12 H 0.09 1.60 7.95 -51.93 -0.41 1.19 16 13 C -0.16 -2.24 6.62 -24.42 -0.16 -2.40 16 14 C 0.10 1.07 6.68 -2.53 -0.02 1.05 16 15 N -0.61 -8.81 3.33 -170.52 -0.57 -9.38 16 16 C 0.52 7.91 7.93 -10.99 -0.09 7.83 16 17 O -0.52 -10.47 16.83 -14.35 -0.24 -10.71 16 18 C 0.05 0.50 5.42 36.01 0.20 0.70 16 19 O -0.35 -4.20 9.86 -55.14 -0.54 -4.74 16 20 C 0.10 0.73 6.11 36.01 0.22 0.95 16 21 C -0.03 -0.25 5.54 -104.35 -0.58 -0.83 16 22 C -0.16 -1.24 9.81 -39.43 -0.39 -1.62 16 23 C 0.12 1.00 11.18 -17.56 -0.20 0.81 16 24 N -0.50 -5.32 10.39 -13.33 -0.14 -5.46 16 25 C 0.31 3.06 7.74 -17.12 -0.13 2.93 16 26 O -0.48 -4.12 13.56 -18.72 -0.25 -4.38 16 27 C -0.16 -1.44 9.74 -39.28 -0.38 -1.82 16 28 C 0.09 1.57 6.51 -3.06 -0.02 1.55 16 29 H 0.02 0.46 8.07 -51.93 -0.42 0.04 16 30 H 0.04 0.95 2.58 -51.92 -0.13 0.81 16 31 H 0.04 0.66 6.15 -51.93 -0.32 0.34 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.13 6.17 -51.93 -0.32 0.81 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.56 7.47 -51.93 -0.39 0.17 16 37 H 0.08 0.60 7.85 -51.93 -0.41 0.19 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 40 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 41 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.40 1.19 9.06 45.56 0.41 1.60 16 44 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 45 H 0.07 1.39 7.06 -51.93 -0.37 1.02 16 46 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 378.56 15.07 5.70 5.70 Total: -1.00 -37.24 378.56 -7.23 -44.47 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.74 Total: -1.25 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -1.50 Total: 8.15 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.38 Total: -54.39 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -1.04 Total: -19.83 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.27 Total: 17.14 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.24 -7.23 -44.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190921365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.837 kcal (2) G-P(sol) polarization free energy of solvation -37.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds