Wall clock time and date at job start Tue Mar 31 2020 18:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 120.00166 * 2 1 4 4 H 1.07998 * 119.99970 * 149.89618 * 3 2 1 5 5 C 1.38817 * 119.99815 * 329.90123 * 3 2 1 6 6 N 1.31620 * 119.99638 * 151.71301 * 5 3 2 7 7 Si 1.86796 * 120.00155 * 331.71423 * 5 3 2 8 8 H 1.48503 * 109.47167 * 95.38576 * 7 5 3 9 9 H 1.48501 * 109.47258 * 215.39045 * 7 5 3 10 10 H 1.48508 * 109.47087 * 335.38645 * 7 5 3 11 11 C 1.46492 * 120.00145 * 180.02562 * 2 1 3 12 12 H 1.08994 * 110.64646 * 178.31303 * 11 2 1 13 13 C 1.55449 * 110.85968 * 55.08697 * 11 2 1 14 14 C 1.54913 * 101.45254 * 206.07807 * 13 11 2 15 15 N 1.47427 * 104.92894 * 37.00143 * 14 13 11 16 16 C 1.34773 * 125.64644 * 155.79627 * 15 14 13 17 17 O 1.21278 * 119.99709 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00220 * 0.02663 * 16 15 14 19 19 O 1.42895 * 109.47514 * 179.97438 * 18 16 15 20 20 C 1.42899 * 114.00097 * 179.97438 * 19 18 16 21 21 C 1.50705 * 109.46867 * 180.02562 * 20 19 18 22 22 C 1.38820 * 120.75983 * 90.00257 * 21 20 19 23 23 C 1.38051 * 119.29106 * 180.02562 * 22 21 20 24 24 N 1.31964 * 120.83104 * 359.97438 * 23 22 21 25 25 C 1.32243 * 121.65331 * 0.02562 * 24 23 22 26 26 O 1.35673 * 119.68922 * 180.02562 * 25 24 23 27 27 C 1.38380 * 120.75597 * 269.72011 * 21 20 19 28 28 C 1.47021 * 108.70202 * 335.81973 * 15 14 13 29 29 H 1.08998 * 109.46926 * 275.27030 * 1 2 3 30 30 H 1.09007 * 109.46859 * 35.26832 * 1 2 3 31 31 H 1.09002 * 109.47472 * 155.27088 * 1 2 3 32 32 H 0.96997 * 119.99578 * 179.97438 * 6 5 3 33 33 H 1.09001 * 111.11760 * 88.02749 * 13 11 2 34 34 H 1.08997 * 111.01375 * 324.08607 * 13 11 2 35 35 H 1.09002 * 110.36468 * 278.11010 * 14 13 11 36 36 H 1.09000 * 110.36890 * 155.90125 * 14 13 11 37 37 H 1.09006 * 109.47282 * 300.00491 * 18 16 15 38 38 H 1.09004 * 109.47233 * 59.99657 * 18 16 15 39 39 H 1.08997 * 109.47161 * 299.99992 * 20 19 18 40 40 H 1.08994 * 109.47132 * 60.00686 * 20 19 18 41 41 H 1.08001 * 120.35772 * 0.02562 * 22 21 20 42 42 H 1.08001 * 119.58445 * 180.02562 * 23 22 21 43 43 H 0.96703 * 113.99699 * 90.00069 * 26 25 24 44 44 H 1.08007 * 120.44061 * 0.02562 * 27 21 20 45 45 H 1.08997 * 109.88099 * 120.47403 * 28 15 14 46 46 H 1.09005 * 109.88089 * 241.63718 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1205 1.2490 0.4691 5 6 1.5960 2.3071 -0.6029 6 7 1.9096 3.5097 -0.1697 7 14 0.4059 2.1089 -2.0289 8 1 -0.9883 2.1423 -1.5185 9 1 0.6051 3.2168 -2.9976 10 1 0.6547 0.8100 -2.7045 11 6 2.1975 -1.2686 -0.0006 12 1 3.2725 -1.0917 -0.0305 13 6 1.7543 -2.1632 -1.1921 14 6 2.0705 -3.5788 -0.6483 15 7 1.7365 -3.5179 0.7864 16 6 1.4100 -4.5704 1.5622 17 8 1.1524 -4.4022 2.7353 18 6 1.3650 -5.9563 0.9721 19 8 0.9976 -6.8940 1.9858 20 6 0.9250 -8.2459 1.5283 21 6 0.5312 -9.1432 2.6733 22 6 -0.8049 -9.4112 2.9382 23 6 -1.1314 -10.2370 3.9951 24 7 -0.1913 -10.7714 4.7514 25 6 1.0919 -10.5399 4.5307 26 8 2.0254 -11.1106 5.3330 27 6 1.4934 -9.7234 3.4810 28 6 1.8182 -2.1187 1.2304 29 1 -0.3633 0.0944 1.0233 30 1 -0.3633 0.8391 -0.5934 31 1 -0.3634 -0.9334 -0.4299 32 1 1.5230 4.2931 -0.5912 33 1 2.3414 -1.9475 -2.0848 34 1 0.6885 -2.0500 -1.3906 35 1 3.1274 -3.8093 -0.7823 36 1 1.4538 -4.3245 -1.1500 37 1 0.6307 -5.9848 0.1669 38 1 2.3474 -6.2151 0.5770 39 1 0.1810 -8.3216 0.7353 40 1 1.8979 -8.5522 1.1442 41 1 -1.5807 -8.9783 2.3240 42 1 -2.1694 -10.4491 4.2052 43 1 2.3299 -11.9763 5.0280 44 1 2.5424 -9.5396 3.3008 45 1 0.8526 -1.7965 1.6200 46 1 2.5833 -2.0181 2.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190921365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:14 Heat of formation + Delta-G solvation = -63.224355 kcal Electronic energy + Delta-G solvation = -27982.237271 eV Core-core repulsion = 23873.041923 eV Total energy + Delta-G solvation = -4109.195348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.50860 -41.14629 -39.38376 -38.54722 -37.88617 -36.64002 -34.27963 -33.82224 -31.84331 -31.26577 -30.29648 -28.97172 -28.09637 -27.23379 -25.05813 -24.49782 -23.84727 -23.09168 -21.00735 -20.45940 -19.51281 -18.99337 -18.38147 -18.09843 -17.89297 -17.47322 -17.26277 -17.09904 -16.67428 -16.46661 -16.16752 -15.69924 -15.24163 -15.13768 -14.91361 -14.66929 -14.40593 -14.37147 -14.15533 -14.09878 -13.58137 -13.40488 -13.25498 -13.00401 -12.85342 -12.74711 -12.68091 -12.52702 -12.42693 -12.36423 -12.04871 -11.59576 -11.40309 -11.02762 -10.77939 -10.75610 -10.60215 -10.50685 -9.94720 -9.69440 -8.95584 -8.22179 -5.51025 -0.02175 0.04064 1.32960 1.43630 1.54949 1.55265 1.67147 2.43164 2.49819 2.66797 2.97019 3.04665 3.31762 3.46994 3.67248 3.75869 3.77652 3.98752 4.05550 4.05825 4.18256 4.20912 4.25444 4.32474 4.34355 4.39669 4.44395 4.51814 4.58009 4.70537 4.71462 4.73894 4.84332 4.84969 4.96339 4.99850 5.19555 5.23647 5.25913 5.36126 5.55030 5.86082 6.00294 6.13269 6.52475 6.59588 6.90095 6.90187 7.11880 7.60012 7.98678 8.97443 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030718 B = 0.001851 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.284611 B =15119.827504 C =15216.990289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.608 5.608 3 C -0.266 4.266 4 H 0.047 0.953 5 C -0.026 4.026 6 N -0.943 5.943 7 Si 0.948 3.052 8 H -0.280 1.280 9 H -0.311 1.311 10 H -0.248 1.248 11 C 0.165 3.835 12 H 0.083 0.917 13 C -0.148 4.148 14 C 0.103 3.897 15 N -0.612 5.612 16 C 0.515 3.485 17 O -0.587 6.587 18 C 0.059 3.941 19 O -0.395 6.395 20 C 0.098 3.902 21 C -0.041 4.041 22 C -0.161 4.161 23 C 0.112 3.888 24 N -0.533 5.533 25 C 0.290 3.710 26 O -0.496 6.496 27 C -0.172 4.172 28 C 0.100 3.900 29 H 0.011 0.989 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.263 0.737 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.166 0.834 42 H 0.188 0.812 43 H 0.419 0.581 44 H 0.154 0.846 45 H 0.046 0.954 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.732 -33.169 -5.326 33.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.331 5.331 3 C -0.395 4.395 4 H 0.065 0.935 5 C -0.222 4.222 6 N -0.587 5.587 7 Si 0.777 3.223 8 H -0.208 1.208 9 H -0.240 1.240 10 H -0.172 1.172 11 C 0.057 3.943 12 H 0.101 0.899 13 C -0.188 4.188 14 C -0.018 4.018 15 N -0.347 5.347 16 C 0.305 3.695 17 O -0.467 6.467 18 C -0.020 4.020 19 O -0.315 6.315 20 C 0.023 3.977 21 C -0.049 4.049 22 C -0.180 4.180 23 C -0.044 4.044 24 N -0.253 5.253 25 C 0.112 3.888 26 O -0.306 6.306 27 C -0.193 4.193 28 C -0.026 4.026 29 H 0.029 0.971 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.184 0.816 42 H 0.205 0.795 43 H 0.280 0.720 44 H 0.172 0.828 45 H 0.065 0.935 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.149 -32.993 -3.460 33.323 hybrid contribution 0.007 1.013 -0.916 1.366 sum -3.142 -31.979 -4.376 32.430 Atomic orbital electron populations 1.21367 0.83802 0.99928 0.98472 1.44070 1.01264 1.01616 1.86114 1.18695 1.03457 0.86914 1.30476 0.93521 1.25944 1.01094 0.94461 1.00741 1.70084 1.48544 0.98709 1.41325 0.85836 0.78291 0.77601 0.80535 1.20841 1.24014 1.17181 1.21611 0.96394 0.84156 0.92155 0.89919 1.23363 1.02634 0.93942 0.98858 1.22653 1.02948 0.98181 0.78035 1.48501 1.67716 1.06071 1.12374 1.20851 0.76182 0.86903 0.85558 1.90723 1.50771 1.86240 1.18931 1.22299 1.04509 0.84403 0.90769 1.88043 1.90868 1.16586 1.35984 1.21588 1.03458 0.79341 0.93363 1.20205 0.93485 0.94917 0.96333 1.22445 0.96946 0.98930 0.99708 1.23035 0.99120 0.92269 0.89988 1.67168 1.02133 1.26024 1.29971 1.19371 0.86322 0.94492 0.88636 1.84762 1.54621 1.39773 1.51440 1.22229 1.02388 1.00028 0.94642 1.22336 1.00336 0.81249 0.98672 0.97072 0.95473 0.90952 0.92796 0.88446 0.90922 0.88453 0.86671 0.86330 0.86468 0.88462 0.89133 0.81631 0.79522 0.71993 0.82830 0.93532 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.47 8.52 127.77 1.09 5.56 16 2 N -0.61 -27.21 2.61 -695.58 -1.81 -29.02 16 3 C -0.27 -14.65 9.87 84.03 0.83 -13.82 16 4 H 0.05 2.83 8.06 -2.91 -0.02 2.81 16 5 C -0.03 -1.46 5.26 84.86 0.45 -1.01 16 6 N -0.94 -58.20 13.97 21.65 0.30 -57.90 16 7 Si 0.95 44.27 25.14 68.60 1.72 46.00 16 8 H -0.28 -12.69 6.61 99.48 0.66 -12.04 16 9 H -0.31 -14.84 7.11 99.48 0.71 -14.13 16 10 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 11 C 0.16 5.71 3.44 46.29 0.16 5.86 16 12 H 0.08 2.94 7.95 -2.39 -0.02 2.92 16 13 C -0.15 -3.57 6.62 32.09 0.21 -3.36 16 14 C 0.10 1.67 6.68 86.86 0.58 2.25 16 15 N -0.61 -15.81 3.33 -811.78 -2.70 -18.51 16 16 C 0.52 14.30 7.93 87.66 0.69 15.00 16 17 O -0.59 -23.61 16.83 16.01 0.27 -23.34 16 18 C 0.06 0.89 5.42 71.24 0.39 1.28 16 19 O -0.40 -8.03 9.86 -129.94 -1.28 -9.31 16 20 C 0.10 1.04 6.11 71.24 0.44 1.48 16 21 C -0.04 -0.61 5.54 -19.69 -0.11 -0.72 16 22 C -0.16 -2.14 9.81 22.36 0.22 -1.92 16 23 C 0.11 1.72 11.18 84.63 0.95 2.66 16 24 N -0.53 -11.19 10.39 -308.95 -3.21 -14.40 16 25 C 0.29 5.70 7.74 84.79 0.66 6.36 16 26 O -0.50 -8.53 13.56 -89.91 -1.22 -9.75 16 27 C -0.17 -2.84 9.74 22.47 0.22 -2.62 16 28 C 0.10 3.41 6.51 86.73 0.56 3.98 16 29 H 0.01 0.47 8.07 -2.39 -0.02 0.45 16 30 H 0.03 1.21 2.58 -2.38 -0.01 1.20 16 31 H 0.07 2.44 6.15 -2.39 -0.01 2.42 16 32 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.07 1.82 6.17 -2.39 -0.01 1.81 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.12 0.94 7.47 -2.39 -0.02 0.93 16 37 H 0.12 0.92 7.85 -2.38 -0.02 0.90 16 38 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.10 0.46 8.10 -2.39 -0.02 0.44 16 40 H 0.09 0.52 8.10 -2.39 -0.02 0.50 16 41 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 42 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.42 2.45 9.06 -74.06 -0.67 1.78 16 44 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 45 H 0.05 1.83 7.06 -2.39 -0.02 1.81 16 46 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -87.59 378.56 -0.31 -87.89 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.29 Total: 7.38 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 7.33 Total: 20.96 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -7.42 Total: -119.84 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -2.23 Total: -42.40 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.72 Total: 46.00 kcal Total: -87.59 -0.31 -87.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190921365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.669 kcal (2) G-P(sol) polarization free energy of solvation -87.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds