Wall clock time and date at job start Tue Mar 31 2020 18:46:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46897 * 111.00117 * 2 1
4 4 C 1.50700 * 109.47224 * 293.95395 * 3 2 1
5 5 O 1.21293 * 119.99753 * 0.02562 * 4 3 2
6 6 N 1.34776 * 120.00120 * 179.97438 * 4 3 2
7 7 C 1.37097 * 119.99930 * 180.27456 * 6 4 3
8 8 H 1.07997 * 119.99801 * 359.73138 * 7 6 4
9 9 C 1.38946 * 119.99966 * 179.72791 * 7 6 4
10 10 N 1.31413 * 120.00056 * 0.02562 * 9 7 6
11 11 Si 1.86800 * 120.00244 * 180.02562 * 9 7 6
12 12 H 1.48500 * 109.46859 * 89.99859 * 11 9 7
13 13 H 1.48494 * 109.47383 * 210.00023 * 11 9 7
14 14 H 1.48499 * 109.47044 * 330.00376 * 11 9 7
15 15 C 1.46902 * 110.99832 * 123.95582 * 2 1 3
16 16 H 1.08999 * 110.88795 * 297.25534 * 15 2 1
17 17 C 1.55159 * 111.00730 * 61.14170 * 15 2 1
18 18 C 1.54370 * 102.92191 * 153.54215 * 17 15 2
19 19 N 1.47012 * 107.28826 * 337.86423 * 18 17 15
20 20 C 1.34780 * 125.65116 * 178.87020 * 19 18 17
21 21 O 1.21277 * 120.00472 * 180.02562 * 20 19 18
22 22 C 1.50705 * 119.99442 * 0.03955 * 20 19 18
23 23 C 1.50698 * 109.47040 * 180.02562 * 22 20 19
24 24 C 1.34521 * 125.79195 * 89.71693 * 23 22 20
25 25 C 1.41381 * 106.84122 * 179.89004 * 24 23 22
26 26 C 1.34509 * 106.84253 * 0.37090 * 25 24 23
27 27 O 1.34306 * 108.42303 * 359.77464 * 26 25 24
28 28 C 1.47426 * 108.70735 * 358.90613 * 19 18 17
29 29 H 1.08998 * 109.47130 * 66.03943 * 1 2 3
30 30 H 1.09005 * 109.46955 * 186.04133 * 1 2 3
31 31 H 1.09004 * 109.46843 * 306.03710 * 1 2 3
32 32 H 1.09005 * 109.47245 * 173.95390 * 3 2 1
33 33 H 1.09002 * 109.47200 * 53.95566 * 3 2 1
34 34 H 0.97000 * 119.99579 * 0.02562 * 6 4 3
35 35 H 0.96998 * 120.00037 * 179.97438 * 10 9 7
36 36 H 1.09000 * 110.71753 * 271.94293 * 17 15 2
37 37 H 1.09008 * 110.71809 * 35.21317 * 17 15 2
38 38 H 1.09000 * 109.90267 * 218.42164 * 18 17 15
39 39 H 1.09000 * 109.97123 * 97.34273 * 18 17 15
40 40 H 1.09000 * 109.46973 * 299.99867 * 22 20 19
41 41 H 1.09002 * 109.47169 * 60.00419 * 22 20 19
42 42 H 1.07998 * 126.57785 * 0.02562 * 24 23 22
43 43 H 1.08000 * 126.58051 * 180.11733 * 25 24 23
44 44 H 1.07996 * 125.79144 * 179.74882 * 26 25 24
45 45 H 1.08999 * 110.36690 * 265.29204 * 28 19 18
46 46 H 1.08998 * 110.46101 * 143.01783 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6370 2.0471 -1.2984
5 8 1.0047 1.4456 -2.1407
6 7 2.0181 3.3202 -1.5233
7 6 1.6871 3.9367 -2.7022
8 1 1.1247 3.4008 -3.4525
9 6 2.0751 5.2510 -2.9317
10 7 2.7598 5.9029 -2.0189
11 14 1.6235 6.0914 -4.5377
12 1 0.3092 6.7668 -4.3904
13 1 2.6613 7.0971 -4.8790
14 1 1.5408 5.0783 -5.6203
15 6 1.9954 -0.7660 1.1376
16 1 1.6993 -0.3111 2.0828
17 6 1.5421 -2.2483 1.0675
18 6 2.6575 -2.9872 1.8375
19 7 3.8488 -2.1261 1.8139
20 6 5.0315 -2.4051 2.3970
21 8 5.9498 -1.6175 2.3132
22 6 5.2127 -3.6961 3.1531
23 6 6.6137 -3.7632 3.7040
24 6 7.0097 -3.3045 4.9050
25 6 8.3935 -3.5741 5.0106
26 6 8.7622 -4.1740 3.8645
27 8 7.6802 -4.2859 3.0768
28 6 3.5355 -0.9063 1.0474
29 1 -0.3633 0.4173 -0.9391
30 1 -0.3633 -1.0220 0.1082
31 1 -0.3633 0.6046 0.8311
32 1 3.0798 1.3444 0.1082
33 1 1.5612 1.9273 0.8309
34 1 2.5234 3.8013 -0.8495
35 1 3.0310 6.8203 -2.1793
36 1 0.5791 -2.3807 1.5608
37 1 1.4969 -2.5892 0.0331
38 1 2.8773 -3.9375 1.3510
39 1 2.3464 -3.1614 2.8675
40 1 4.4973 -3.7397 3.9743
41 1 5.0457 -4.5376 2.4806
42 1 6.3890 -2.8245 5.6472
43 1 9.0329 -3.3393 5.8487
44 1 9.7593 -4.5085 3.6191
45 1 3.8458 -1.0207 0.0088
46 1 4.0223 -0.0397 1.4947
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001192976874.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:46:56
Heat of formation + Delta-G solvation = -60.684808 kcal
Electronic energy + Delta-G solvation = -28300.681722 eV
Core-core repulsion = 24191.596497 eV
Total energy + Delta-G solvation = -4109.085225 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-43.48286 -41.25360 -40.30925 -38.97383 -36.74991 -35.78696 -34.14797 -33.30018
-33.21660 -31.84759 -30.14253 -29.30227 -27.98595 -26.72231 -25.15248 -23.98173
-22.68746 -21.73209 -21.41021 -20.89845 -20.27761 -19.84114 -18.47219 -18.29763
-17.86044 -17.47298 -16.89001 -16.64933 -16.51369 -16.20026 -15.98621 -15.68073
-15.43780 -15.20230 -15.00134 -14.67578 -14.36471 -13.97673 -13.77185 -13.73402
-13.71988 -13.54935 -13.53579 -13.35800 -13.07589 -12.78516 -12.71022 -12.56888
-12.43825 -12.33860 -12.13500 -11.87852 -11.80022 -11.46411 -11.12559 -10.82398
-10.29816 -10.01218 -9.72813 -9.39540 -9.25019 -8.46891 -5.95771 0.73734
1.37189 1.40642 1.52122 1.53791 1.62560 1.90735 2.04353 2.19154
2.28481 2.77287 3.19465 3.29692 3.42231 3.61031 3.68049 3.86740
4.04101 4.14370 4.15225 4.17896 4.28885 4.33409 4.37362 4.40299
4.43870 4.48092 4.60483 4.63491 4.72305 4.81959 4.89460 4.92840
5.00902 5.02603 5.16171 5.21378 5.22665 5.31205 5.40850 5.61854
5.84352 6.03855 6.20150 6.20311 6.44761 6.59673 7.04900 7.12343
7.55623 8.11022 8.70699
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.016312 B = 0.002129 C = 0.001939
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1716.149693 B =13146.299970 C =14438.464321
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 N -0.525 5.525
3 C 0.055 3.945
4 C 0.443 3.557
5 O -0.610 6.610
6 N -0.577 5.577
7 C -0.330 4.330
8 H 0.081 0.919
9 C -0.016 4.016
10 N -0.923 5.923
11 Si 0.994 3.006
12 H -0.269 1.269
13 H -0.272 1.272
14 H -0.272 1.272
15 C 0.072 3.928
16 H 0.069 0.931
17 C -0.116 4.116
18 C 0.098 3.902
19 N -0.614 5.614
20 C 0.522 3.478
21 O -0.587 6.587
22 C -0.045 4.045
23 C -0.020 4.020
24 C -0.210 4.210
25 C -0.230 4.230
26 C -0.045 4.045
27 O -0.195 6.195
28 C 0.112 3.888
29 H 0.056 0.944
30 H 0.094 0.906
31 H 0.028 0.972
32 H 0.096 0.904
33 H 0.068 0.932
34 H 0.394 0.606
35 H 0.277 0.723
36 H 0.112 0.888
37 H 0.081 0.919
38 H 0.096 0.904
39 H 0.107 0.893
40 H 0.161 0.839
41 H 0.137 0.863
42 H 0.159 0.841
43 H 0.167 0.833
44 H 0.234 0.766
45 H 0.058 0.942
46 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.764 -22.905 17.648 29.047
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 N -0.249 5.249
3 C -0.076 4.076
4 C 0.231 3.769
5 O -0.496 6.496
6 N -0.214 5.214
7 C -0.460 4.460
8 H 0.099 0.901
9 C -0.216 4.216
10 N -0.564 5.564
11 Si 0.818 3.182
12 H -0.195 1.195
13 H -0.197 1.197
14 H -0.197 1.197
15 C -0.037 4.037
16 H 0.087 0.913
17 C -0.154 4.154
18 C -0.024 4.024
19 N -0.348 5.348
20 C 0.312 3.688
21 O -0.467 6.467
22 C -0.084 4.084
23 C -0.070 4.070
24 C -0.229 4.229
25 C -0.249 4.249
26 C -0.112 4.112
27 O -0.092 6.092
28 C -0.012 4.012
29 H 0.074 0.926
30 H 0.113 0.887
31 H 0.046 0.954
32 H 0.114 0.886
33 H 0.086 0.914
34 H 0.228 0.772
35 H 0.086 0.914
36 H 0.130 0.870
37 H 0.099 0.901
38 H 0.114 0.886
39 H 0.125 0.875
40 H 0.179 0.821
41 H 0.155 0.845
42 H 0.176 0.824
43 H 0.184 0.816
44 H 0.250 0.750
45 H 0.076 0.924
46 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 3.102 -23.090 16.363 28.470
hybrid contribution 0.255 1.878 0.211 1.907
sum 3.356 -21.212 16.574 27.128
Atomic orbital electron populations
1.22448 0.85644 1.02775 1.01037 1.61545 1.09481 1.11661 1.42259
1.21766 1.01500 0.90033 0.94314 1.20677 0.83742 0.82205 0.90318
1.90454 1.45021 1.65240 1.48888 1.41963 1.50010 1.11623 1.17806
1.19668 1.34321 0.96180 0.95818 0.90087 1.26078 0.96317 0.96726
1.02447 1.69685 1.38279 1.12570 1.35881 0.84909 0.78240 0.77759
0.77321 1.19458 1.19729 1.19700 1.22818 0.92750 0.96020 0.92099
0.91291 1.22754 0.99288 0.91107 1.02276 1.22444 0.82823 0.94058
1.03054 1.48472 1.12649 1.21229 1.52473 1.20795 0.80468 0.88736
0.78793 1.90750 1.41680 1.51877 1.62424 1.20184 0.89825 0.95526
1.02819 1.22008 0.89355 1.02579 0.93048 1.21892 0.96728 1.05518
0.98811 1.22178 0.96088 1.05612 1.00976 1.24741 0.91682 1.04206
0.90566 1.83978 1.17204 1.64136 1.43849 1.22090 0.95424 0.87829
0.95832 0.92566 0.88730 0.95390 0.88577 0.91421 0.77232 0.91365
0.87007 0.90079 0.88558 0.87496 0.82132 0.84505 0.82352 0.81556
0.75016 0.92368 0.92255
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.81 9.08 127.69 1.16 1.97 16
2 N -0.52 -15.99 4.40 -893.41 -3.93 -19.92 16
3 C 0.06 1.96 5.33 85.56 0.46 2.41 16
4 C 0.44 21.37 7.54 87.66 0.66 22.03 16
5 O -0.61 -33.41 13.88 -3.07 -0.04 -33.46 16
6 N -0.58 -30.32 5.29 -306.99 -1.62 -31.95 16
7 C -0.33 -19.04 9.68 84.04 0.81 -18.22 16
8 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16
9 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16
10 N -0.92 -51.11 13.05 21.66 0.28 -50.82 16
11 Si 0.99 43.69 29.55 68.60 2.03 45.72 16
12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16
13 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16
14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16
15 C 0.07 1.56 2.71 46.31 0.13 1.69 16
16 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16
17 C -0.12 -1.59 5.30 31.80 0.17 -1.42 16
18 C 0.10 0.98 6.49 86.75 0.56 1.54 16
19 N -0.61 -12.18 3.33 -811.72 -2.70 -14.88 16
20 C 0.52 12.14 7.84 87.66 0.69 12.83 16
21 O -0.59 -20.53 16.29 -3.02 -0.05 -20.58 16
22 C -0.04 -0.61 5.43 29.10 0.16 -0.46 16
23 C -0.02 -0.41 5.82 24.83 0.14 -0.26 16
24 C -0.21 -4.13 10.81 22.19 0.24 -3.89 16
25 C -0.23 -4.11 10.91 22.19 0.24 -3.87 16
26 C -0.05 -0.79 12.09 66.97 0.81 0.02 16
27 O -0.19 -4.43 10.65 -2.57 -0.03 -4.46 16
28 C 0.11 2.87 5.38 86.86 0.47 3.34 16
29 H 0.06 2.12 6.01 -2.39 -0.01 2.10 16
30 H 0.09 2.01 6.72 -2.38 -0.02 1.99 16
31 H 0.03 0.72 8.06 -2.38 -0.02 0.70 16
32 H 0.10 3.27 6.72 -2.38 -0.02 3.25 16
33 H 0.07 2.16 8.06 -2.39 -0.02 2.14 16
34 H 0.39 19.96 7.90 -92.71 -0.73 19.23 16
35 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16
36 H 0.11 0.94 7.88 -2.39 -0.02 0.92 16
37 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16
38 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16
39 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16
40 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16
41 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16
42 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16
43 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16
44 H 0.23 2.11 8.06 -2.91 -0.02 2.08 16
45 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16
46 H 0.06 1.73 7.68 -2.39 -0.02 1.71 16
Total: -1.00 -82.41 383.32 1.37 -81.04
By element:
Atomic # 1 Polarization: 31.74 SS G_CDS: 0.27 Total: 32.01 kcal
Atomic # 6 Polarization: 10.13 SS G_CDS: 7.16 Total: 17.29 kcal
Atomic # 7 Polarization: -109.60 SS G_CDS: -7.97 Total: -117.57 kcal
Atomic # 8 Polarization: -58.37 SS G_CDS: -0.12 Total: -58.49 kcal
Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal
Total: -82.41 1.37 -81.04 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192976874.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.360 kcal
(2) G-P(sol) polarization free energy of solvation -82.415 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.055 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.045 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.685 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds