Wall clock time and date at job start Tue Mar 31 2020 18:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36931 * 120.00157 * 2 1 4 4 H 1.08000 * 119.99999 * 203.29795 * 3 2 1 5 5 C 1.38811 * 120.00111 * 23.30348 * 3 2 1 6 6 N 1.31622 * 119.99988 * 13.97904 * 5 3 2 7 7 Si 1.86800 * 120.00373 * 193.97379 * 5 3 2 8 8 H 1.48504 * 109.46637 * 90.00192 * 7 5 3 9 9 H 1.48499 * 109.47251 * 210.00025 * 7 5 3 10 10 H 1.48500 * 109.47088 * 330.00542 * 7 5 3 11 11 C 1.46503 * 119.99893 * 180.02562 * 2 1 3 12 12 H 1.08994 * 110.88626 * 182.42853 * 11 2 1 13 13 C 1.55150 * 111.00744 * 58.54222 * 11 2 1 14 14 C 1.54326 * 102.94705 * 206.38750 * 13 11 2 15 15 N 1.47022 * 107.26701 * 22.19437 * 14 13 11 16 16 C 1.34780 * 125.64529 * 181.02672 * 15 14 13 17 17 O 1.21282 * 119.99772 * 180.02562 * 16 15 14 18 18 C 1.50699 * 120.00208 * 0.02562 * 16 15 14 19 19 C 1.52998 * 109.47084 * 180.02562 * 18 16 15 20 20 N 1.46502 * 109.46948 * 180.02562 * 19 18 16 21 21 C 1.34771 * 120.00174 * 180.02562 * 20 19 18 22 22 O 1.21700 * 119.99730 * 359.97438 * 21 20 19 23 23 C 1.46660 * 120.00418 * 180.02562 * 21 20 19 24 24 C 1.36543 * 125.98953 * 180.02562 * 23 21 20 25 25 C 1.40361 * 106.70866 * 179.97438 * 24 23 21 26 26 C 1.35135 * 107.11273 * 359.97438 * 25 24 23 27 27 O 1.33929 * 108.76786 * 0.02562 * 26 25 24 28 28 C 1.47424 * 108.70356 * 1.28834 * 15 14 13 29 29 H 1.08999 * 109.46869 * 275.16590 * 1 2 3 30 30 H 1.09002 * 109.46840 * 35.16473 * 1 2 3 31 31 H 1.09000 * 109.46735 * 155.16427 * 1 2 3 32 32 H 0.96993 * 120.00707 * 180.02562 * 6 5 3 33 33 H 1.09003 * 110.72213 * 88.02092 * 13 11 2 34 34 H 1.09009 * 110.72052 * 324.75133 * 13 11 2 35 35 H 1.08996 * 109.88083 * 262.77275 * 14 13 11 36 36 H 1.08998 * 109.88337 * 141.61201 * 14 13 11 37 37 H 1.09004 * 109.46549 * 60.00165 * 18 16 15 38 38 H 1.08996 * 109.47083 * 300.00515 * 18 16 15 39 39 H 1.09001 * 109.46966 * 60.00555 * 19 18 16 40 40 H 1.08996 * 109.47414 * 300.00107 * 19 18 16 41 41 H 0.96999 * 119.99783 * 359.97438 * 20 19 18 42 42 H 1.07998 * 126.64372 * 359.69141 * 24 23 21 43 43 H 1.07998 * 126.44170 * 179.97438 * 25 24 23 44 44 H 1.07998 * 125.61269 * 179.97438 * 26 25 24 45 45 H 1.08998 * 110.36901 * 94.48349 * 28 15 14 46 46 H 1.09000 * 110.36509 * 216.80747 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1637 1.2239 -0.3699 5 6 1.5407 2.3390 0.4756 6 7 0.4273 2.2556 1.1727 7 14 2.3010 4.0091 0.1263 8 1 1.7561 4.5444 -1.1472 9 1 1.9764 4.9424 1.2348 10 1 3.7750 3.8681 0.0135 11 6 2.1975 -1.2688 -0.0006 12 1 3.2729 -1.0966 0.0427 13 6 1.8210 -2.1278 -1.2365 14 6 2.0904 -3.5679 -0.7516 15 7 2.0433 -3.5497 0.7178 16 6 2.2485 -4.6105 1.5234 17 8 2.1843 -4.4790 2.7274 18 6 2.5578 -5.9601 0.9283 19 6 2.7445 -6.9821 2.0515 20 7 3.0457 -8.2939 1.4729 21 6 3.2500 -9.3548 2.2785 22 8 3.1847 -9.2230 3.4866 23 6 3.5521 -10.6680 1.6994 24 6 3.7789 -11.8196 2.3970 25 6 4.0254 -12.8242 1.4483 26 6 3.9389 -12.2491 0.2285 27 8 3.6537 -10.9498 0.3840 28 6 1.7283 -2.1803 1.1637 29 1 -0.3633 0.0925 1.0235 30 1 -0.3633 0.8401 -0.5919 31 1 -0.3633 -0.9326 -0.4316 32 1 0.0015 3.0613 1.5048 33 1 2.4580 -1.8814 -2.0860 34 1 0.7692 -1.9971 -1.4911 35 1 3.0750 -3.8939 -1.0870 36 1 1.3238 -4.2390 -1.1388 37 1 3.4725 -5.8962 0.3389 38 1 1.7334 -6.2719 0.2871 39 1 1.8295 -7.0458 2.6405 40 1 3.5687 -6.6704 2.6931 41 1 3.0974 -8.3989 0.5101 42 1 3.7744 -11.9342 3.4709 43 1 4.2433 -13.8617 1.6544 44 1 4.0777 -12.7539 -0.7161 45 1 0.6559 -2.0713 1.3254 46 1 2.2763 -1.9427 2.0754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193916001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:06 Heat of formation + Delta-G solvation = -23.409478 kcal Electronic energy + Delta-G solvation = -27815.170248 eV Core-core repulsion = 23707.701402 eV Total energy + Delta-G solvation = -4107.468845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.10846 -40.08821 -39.53970 -37.58032 -35.53210 -34.84672 -33.52367 -32.01037 -31.37984 -30.09304 -29.69588 -27.92029 -26.10320 -25.15355 -23.51102 -22.54720 -22.31450 -22.08494 -20.80906 -19.42430 -19.28993 -18.56406 -17.20237 -17.10886 -16.82236 -16.69186 -16.24019 -15.83275 -15.59114 -14.95373 -14.80573 -14.50001 -14.24018 -13.62333 -13.50552 -13.45023 -13.33737 -13.27003 -13.11315 -12.69021 -12.49284 -12.37030 -12.10662 -11.99851 -11.70238 -11.52237 -10.94294 -10.84097 -10.69730 -10.54387 -10.52060 -10.51682 -10.30786 -9.93914 -9.88149 -9.70547 -9.54265 -9.10451 -8.63426 -8.38057 -6.84511 -5.79796 -3.28133 0.63967 1.91276 2.21416 2.70832 2.72936 2.82646 3.26970 3.35266 3.41833 3.43164 4.21005 4.42893 4.44345 4.45655 4.61812 4.64065 4.78856 4.94304 5.15116 5.17625 5.21939 5.27845 5.31888 5.43319 5.44199 5.57546 5.62901 5.73829 5.75229 5.84508 5.85768 5.95856 5.96665 6.26044 6.33595 6.35565 6.47068 6.58235 6.72616 6.82867 7.06063 7.27877 7.65899 7.71010 7.73596 7.74558 8.27532 8.32541 9.14646 9.76993 10.25733 11.24491 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.034898 B = 0.001716 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.142773 B =16309.804727 C =16656.902677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.584 5.584 3 C -0.263 4.263 4 H 0.071 0.929 5 C 0.006 3.994 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.155 4.155 14 C 0.103 3.897 15 N -0.613 5.613 16 C 0.528 3.472 17 O -0.541 6.541 18 C -0.149 4.149 19 C 0.133 3.867 20 N -0.720 5.720 21 C 0.602 3.398 22 O -0.514 6.514 23 C -0.079 4.079 24 C -0.120 4.120 25 C -0.225 4.225 26 C -0.007 4.007 27 O -0.165 6.165 28 C 0.086 3.914 29 H 0.034 0.966 30 H 0.042 0.958 31 H 0.002 0.998 32 H 0.254 0.746 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.405 0.595 42 H 0.161 0.839 43 H 0.157 0.843 44 H 0.211 0.789 45 H 0.068 0.932 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 -28.094 -7.311 29.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.304 5.304 3 C -0.393 4.393 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.546 5.546 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.195 4.195 14 C -0.020 4.020 15 N -0.347 5.347 16 C 0.315 3.685 17 O -0.419 6.419 18 C -0.189 4.189 19 C 0.010 3.990 20 N -0.371 5.371 21 C 0.388 3.612 22 O -0.391 6.391 23 C -0.131 4.131 24 C -0.140 4.140 25 C -0.244 4.244 26 C -0.077 4.077 27 O -0.060 6.060 28 C -0.038 4.038 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.239 0.761 42 H 0.179 0.821 43 H 0.175 0.825 44 H 0.228 0.772 45 H 0.087 0.913 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.333 -27.524 -5.880 28.645 hybrid contribution 0.330 0.587 -0.672 0.951 sum 5.663 -26.937 -6.552 28.295 Atomic orbital electron populations 1.20820 0.82471 0.95601 0.99733 1.43856 1.01866 0.99869 1.84813 1.19214 0.98852 0.85196 1.36023 0.91171 1.25069 0.97961 0.98719 0.97580 1.70067 1.20126 1.27517 1.36923 0.86218 0.78757 0.83885 0.77429 1.21413 1.21692 1.20406 1.21506 0.96401 0.85755 0.90122 0.90351 1.23226 1.02898 0.92759 1.00596 1.22048 1.00645 0.99282 0.80055 1.48544 1.69059 1.09872 1.07261 1.19838 0.77441 0.84784 0.86459 1.90750 1.51952 1.84906 1.14299 1.21772 1.04515 0.93138 0.99507 1.21152 1.03420 0.79448 0.94973 1.45881 1.71756 1.09104 1.10408 1.16506 0.77377 0.81285 0.86068 1.90933 1.51480 1.83564 1.13106 1.22108 1.13300 0.96636 0.81033 1.22022 0.99733 0.90735 1.01558 1.21897 1.08915 1.01462 0.92145 1.24440 1.01616 0.80872 1.00748 1.84054 1.68352 1.27445 1.26184 1.23168 1.01094 0.79073 1.00431 0.94814 0.93940 0.97911 0.93553 0.90545 0.90474 0.91799 0.92051 0.88234 0.88298 0.89933 0.89906 0.76055 0.82128 0.82510 0.77246 0.91325 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.70 7.60 59.85 0.45 4.16 16 2 N -0.58 -13.86 2.96 -170.90 -0.51 -14.37 16 3 C -0.26 -6.96 9.60 -15.06 -0.14 -7.11 16 4 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 5 C 0.01 0.16 5.08 -17.43 -0.09 0.07 16 6 N -0.90 -25.81 10.78 55.49 0.60 -25.21 16 7 Si 0.91 21.37 29.58 -169.99 -5.03 16.34 16 8 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 C 0.17 3.30 3.55 -65.66 -0.23 3.07 16 12 H 0.08 1.52 7.95 -51.93 -0.41 1.11 16 13 C -0.15 -2.26 6.49 -24.90 -0.16 -2.43 16 14 C 0.10 1.21 6.49 -3.06 -0.02 1.19 16 15 N -0.61 -9.22 3.32 -170.38 -0.57 -9.79 16 16 C 0.53 7.81 7.85 -10.98 -0.09 7.73 16 17 O -0.54 -10.38 16.24 5.56 0.09 -10.29 16 18 C -0.15 -1.40 5.01 -27.88 -0.14 -1.54 16 19 C 0.13 1.45 4.96 -4.04 -0.02 1.43 16 20 N -0.72 -6.53 5.55 -61.63 -0.34 -6.87 16 21 C 0.60 6.85 7.79 -12.86 -0.10 6.75 16 22 O -0.51 -7.75 16.86 5.19 0.09 -7.66 16 23 C -0.08 -0.74 7.13 -36.80 -0.26 -1.00 16 24 C -0.12 -1.01 10.62 -39.40 -0.42 -1.43 16 25 C -0.23 -1.32 10.88 -39.89 -0.43 -1.75 16 26 C -0.01 -0.03 12.08 29.63 0.36 0.32 16 27 O -0.17 -1.23 10.40 5.02 0.05 -1.18 16 28 C 0.09 1.62 6.47 -2.41 -0.02 1.61 16 29 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 30 H 0.04 1.07 7.39 -51.93 -0.38 0.69 16 31 H 0.00 0.05 6.33 -51.93 -0.33 -0.28 16 32 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.19 6.36 -51.92 -0.33 0.86 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 40 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 41 H 0.40 2.52 8.23 -40.82 -0.34 2.18 16 42 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 43 H 0.16 0.54 8.06 -52.49 -0.42 0.11 16 44 H 0.21 0.16 8.06 -52.49 -0.42 -0.26 16 45 H 0.07 1.39 7.06 -51.93 -0.37 1.02 16 46 H 0.07 1.54 8.03 -51.93 -0.42 1.12 16 LS Contribution 384.54 15.07 5.79 5.79 Total: -1.00 -34.38 384.54 -7.86 -42.24 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.73 Total: -0.07 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: -1.31 Total: 11.06 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.82 Total: -56.24 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.23 Total: -19.13 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.38 -7.86 -42.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193916001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.830 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds