Wall clock time and date at job start Tue Mar 31 2020 18:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36931 * 120.00157 * 2 1 4 4 H 1.08000 * 119.99999 * 203.29795 * 3 2 1 5 5 C 1.38811 * 120.00111 * 23.30348 * 3 2 1 6 6 N 1.31622 * 119.99988 * 13.97904 * 5 3 2 7 7 Si 1.86800 * 120.00373 * 193.97379 * 5 3 2 8 8 H 1.48504 * 109.46637 * 90.00192 * 7 5 3 9 9 H 1.48499 * 109.47251 * 210.00025 * 7 5 3 10 10 H 1.48500 * 109.47088 * 330.00542 * 7 5 3 11 11 C 1.46503 * 119.99893 * 180.02562 * 2 1 3 12 12 H 1.08994 * 110.88626 * 182.42853 * 11 2 1 13 13 C 1.55150 * 111.00744 * 58.54222 * 11 2 1 14 14 C 1.54326 * 102.94705 * 206.38750 * 13 11 2 15 15 N 1.47022 * 107.26701 * 22.19437 * 14 13 11 16 16 C 1.34780 * 125.64529 * 181.02672 * 15 14 13 17 17 O 1.21282 * 119.99772 * 180.02562 * 16 15 14 18 18 C 1.50699 * 120.00208 * 0.02562 * 16 15 14 19 19 C 1.52998 * 109.47084 * 180.02562 * 18 16 15 20 20 N 1.46502 * 109.46948 * 180.02562 * 19 18 16 21 21 C 1.34771 * 120.00174 * 180.02562 * 20 19 18 22 22 O 1.21700 * 119.99730 * 359.97438 * 21 20 19 23 23 C 1.46660 * 120.00418 * 180.02562 * 21 20 19 24 24 C 1.36543 * 125.98953 * 180.02562 * 23 21 20 25 25 C 1.40361 * 106.70866 * 179.97438 * 24 23 21 26 26 C 1.35135 * 107.11273 * 359.97438 * 25 24 23 27 27 O 1.33929 * 108.76786 * 0.02562 * 26 25 24 28 28 C 1.47424 * 108.70356 * 1.28834 * 15 14 13 29 29 H 1.08999 * 109.46869 * 275.16590 * 1 2 3 30 30 H 1.09002 * 109.46840 * 35.16473 * 1 2 3 31 31 H 1.09000 * 109.46735 * 155.16427 * 1 2 3 32 32 H 0.96993 * 120.00707 * 180.02562 * 6 5 3 33 33 H 1.09003 * 110.72213 * 88.02092 * 13 11 2 34 34 H 1.09009 * 110.72052 * 324.75133 * 13 11 2 35 35 H 1.08996 * 109.88083 * 262.77275 * 14 13 11 36 36 H 1.08998 * 109.88337 * 141.61201 * 14 13 11 37 37 H 1.09004 * 109.46549 * 60.00165 * 18 16 15 38 38 H 1.08996 * 109.47083 * 300.00515 * 18 16 15 39 39 H 1.09001 * 109.46966 * 60.00555 * 19 18 16 40 40 H 1.08996 * 109.47414 * 300.00107 * 19 18 16 41 41 H 0.96999 * 119.99783 * 359.97438 * 20 19 18 42 42 H 1.07998 * 126.64372 * 359.69141 * 24 23 21 43 43 H 1.07998 * 126.44170 * 179.97438 * 25 24 23 44 44 H 1.07998 * 125.61269 * 179.97438 * 26 25 24 45 45 H 1.08998 * 110.36901 * 94.48349 * 28 15 14 46 46 H 1.09000 * 110.36509 * 216.80747 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1637 1.2239 -0.3699 5 6 1.5407 2.3390 0.4756 6 7 0.4273 2.2556 1.1727 7 14 2.3010 4.0091 0.1263 8 1 1.7561 4.5444 -1.1472 9 1 1.9764 4.9424 1.2348 10 1 3.7750 3.8681 0.0135 11 6 2.1975 -1.2688 -0.0006 12 1 3.2729 -1.0966 0.0427 13 6 1.8210 -2.1278 -1.2365 14 6 2.0904 -3.5679 -0.7516 15 7 2.0433 -3.5497 0.7178 16 6 2.2485 -4.6105 1.5234 17 8 2.1843 -4.4790 2.7274 18 6 2.5578 -5.9601 0.9283 19 6 2.7445 -6.9821 2.0515 20 7 3.0457 -8.2939 1.4729 21 6 3.2500 -9.3548 2.2785 22 8 3.1847 -9.2230 3.4866 23 6 3.5521 -10.6680 1.6994 24 6 3.7789 -11.8196 2.3970 25 6 4.0254 -12.8242 1.4483 26 6 3.9389 -12.2491 0.2285 27 8 3.6537 -10.9498 0.3840 28 6 1.7283 -2.1803 1.1637 29 1 -0.3633 0.0925 1.0235 30 1 -0.3633 0.8401 -0.5919 31 1 -0.3633 -0.9326 -0.4316 32 1 0.0015 3.0613 1.5048 33 1 2.4580 -1.8814 -2.0860 34 1 0.7692 -1.9971 -1.4911 35 1 3.0750 -3.8939 -1.0870 36 1 1.3238 -4.2390 -1.1388 37 1 3.4725 -5.8962 0.3389 38 1 1.7334 -6.2719 0.2871 39 1 1.8295 -7.0458 2.6405 40 1 3.5687 -6.6704 2.6931 41 1 3.0974 -8.3989 0.5101 42 1 3.7744 -11.9342 3.4709 43 1 4.2433 -13.8617 1.6544 44 1 4.0777 -12.7539 -0.7161 45 1 0.6559 -2.0713 1.3254 46 1 2.2763 -1.9427 2.0754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193916001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:05 Heat of formation + Delta-G solvation = -48.578323 kcal Electronic energy + Delta-G solvation = -27816.261651 eV Core-core repulsion = 23707.701402 eV Total energy + Delta-G solvation = -4108.560248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.62938 -41.22230 -40.52415 -38.97773 -36.58921 -36.42094 -34.05179 -33.56722 -32.50247 -31.27418 -30.58690 -29.29465 -28.06847 -26.22873 -24.80206 -23.82023 -23.23738 -22.65090 -21.54524 -20.95378 -20.25280 -19.41377 -18.95067 -18.28897 -17.63414 -17.40687 -17.28582 -16.87410 -16.70582 -16.40526 -15.98821 -15.63244 -15.29002 -15.05135 -14.80156 -14.53189 -14.39125 -14.14727 -14.05325 -13.93234 -13.69314 -13.53671 -13.40138 -13.10868 -12.95883 -12.78599 -12.55863 -12.46064 -12.39834 -12.18309 -12.03611 -11.81502 -11.63276 -11.38910 -11.04715 -10.98039 -10.64875 -10.40272 -9.66267 -9.63856 -8.79728 -7.84550 -5.34951 0.01187 1.43513 1.47516 1.47894 1.52995 1.57289 1.58929 1.88944 2.05737 2.29406 2.51756 3.27131 3.47036 3.57463 3.72013 3.77542 3.94150 3.96137 4.02509 4.12380 4.14260 4.23155 4.39369 4.44688 4.48636 4.62046 4.75009 4.76631 4.81092 4.84095 4.90631 4.93086 4.97282 5.04775 5.14863 5.20729 5.24691 5.33525 5.40033 5.45610 5.64523 5.70264 5.82250 6.30809 6.36785 6.57648 6.94744 7.10841 7.13555 7.83593 8.27493 9.17988 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.034898 B = 0.001716 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.142773 B =16309.804727 C =16656.902677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.601 5.601 3 C -0.267 4.267 4 H 0.076 0.924 5 C -0.053 4.053 6 N -0.938 5.938 7 Si 0.971 3.029 8 H -0.283 1.283 9 H -0.300 1.300 10 H -0.267 1.267 11 C 0.164 3.836 12 H 0.073 0.927 13 C -0.141 4.141 14 C 0.105 3.895 15 N -0.613 5.613 16 C 0.521 3.479 17 O -0.597 6.597 18 C -0.128 4.128 19 C 0.139 3.861 20 N -0.701 5.701 21 C 0.598 3.402 22 O -0.566 6.566 23 C -0.108 4.108 24 C -0.128 4.128 25 C -0.237 4.237 26 C 0.016 3.984 27 O -0.166 6.166 28 C 0.096 3.904 29 H -0.002 1.002 30 H 0.017 0.983 31 H 0.038 0.962 32 H 0.248 0.752 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.422 0.578 42 H 0.154 0.846 43 H 0.181 0.819 44 H 0.258 0.742 45 H 0.048 0.952 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.002 -31.108 -11.370 33.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.322 5.322 3 C -0.397 4.397 4 H 0.094 0.906 5 C -0.248 4.248 6 N -0.585 5.585 7 Si 0.799 3.201 8 H -0.210 1.210 9 H -0.226 1.226 10 H -0.191 1.191 11 C 0.055 3.945 12 H 0.092 0.908 13 C -0.181 4.181 14 C -0.016 4.016 15 N -0.346 5.346 16 C 0.311 3.689 17 O -0.479 6.479 18 C -0.167 4.167 19 C 0.015 3.985 20 N -0.353 5.353 21 C 0.386 3.614 22 O -0.447 6.447 23 C -0.160 4.160 24 C -0.149 4.149 25 C -0.256 4.256 26 C -0.053 4.053 27 O -0.061 6.061 28 C -0.030 4.030 29 H 0.016 0.984 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.261 0.739 42 H 0.172 0.828 43 H 0.199 0.801 44 H 0.274 0.726 45 H 0.066 0.934 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.789 -30.584 -10.036 32.896 hybrid contribution -0.060 1.361 0.568 1.476 sum 6.729 -29.222 -9.468 31.446 Atomic orbital electron populations 1.20496 0.82746 0.96191 0.97377 1.44048 1.02027 1.00971 1.85155 1.19599 0.99065 0.86407 1.34614 0.90589 1.25852 0.98740 1.02131 0.98079 1.70246 1.21754 1.27761 1.38693 0.85214 0.78499 0.79628 0.76776 1.20974 1.22648 1.19141 1.21691 0.95664 0.84574 0.92568 0.90843 1.23083 1.02883 0.93463 0.98654 1.22322 1.04174 0.97860 0.77263 1.48589 1.68814 1.08151 1.09051 1.20828 0.76010 0.86302 0.85809 1.90737 1.54196 1.85868 1.17054 1.21710 1.07619 0.88548 0.98848 1.20902 1.01344 0.80792 0.95488 1.45635 1.70728 1.07831 1.11113 1.16809 0.76580 0.82359 0.85635 1.90898 1.53942 1.84549 1.15276 1.21660 1.16292 0.95858 0.82180 1.22270 0.99090 0.91598 1.01956 1.22224 1.09333 1.02201 0.91830 1.25417 0.98059 0.79635 1.02219 1.84045 1.68473 1.28820 1.24793 1.22696 0.99162 0.82024 0.99079 0.98354 0.96467 0.94402 0.94283 0.88562 0.91062 0.87986 0.88348 0.84487 0.84553 0.92399 0.92387 0.73932 0.82847 0.80118 0.72637 0.93393 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.49 7.60 127.77 0.97 9.46 16 2 N -0.60 -28.87 2.96 -694.60 -2.05 -30.93 16 3 C -0.27 -14.25 9.60 84.03 0.81 -13.45 16 4 H 0.08 3.88 7.86 -2.91 -0.02 3.86 16 5 C -0.05 -2.92 5.08 84.86 0.43 -2.49 16 6 N -0.94 -55.81 10.78 21.65 0.23 -55.58 16 7 Si 0.97 44.64 29.58 68.60 2.03 46.67 16 8 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 9 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 11 C 0.16 6.15 3.55 46.46 0.17 6.31 16 12 H 0.07 2.80 7.95 -2.39 -0.02 2.78 16 13 C -0.14 -3.65 6.49 31.78 0.21 -3.44 16 14 C 0.11 1.94 6.49 86.73 0.56 2.50 16 15 N -0.61 -17.22 3.32 -811.35 -2.70 -19.92 16 16 C 0.52 14.75 7.85 87.66 0.69 15.44 16 17 O -0.60 -23.75 16.24 -3.04 -0.05 -23.80 16 18 C -0.13 -1.95 5.01 29.85 0.15 -1.80 16 19 C 0.14 2.95 4.96 86.38 0.43 3.38 16 20 N -0.70 -11.71 5.55 -467.10 -2.59 -14.31 16 21 C 0.60 13.72 7.79 86.44 0.67 14.39 16 22 O -0.57 -18.12 16.86 -4.35 -0.07 -18.20 16 23 C -0.11 -1.94 7.13 24.07 0.17 -1.77 16 24 C -0.13 -2.08 10.62 22.39 0.24 -1.84 16 25 C -0.24 -2.13 10.88 22.07 0.24 -1.89 16 26 C 0.02 0.10 12.08 67.10 0.81 0.91 16 27 O -0.17 -1.98 10.40 -4.97 -0.05 -2.04 16 28 C 0.10 3.68 6.47 86.93 0.56 4.24 16 29 H 0.00 -0.10 7.33 -2.39 -0.02 -0.12 16 30 H 0.02 0.87 7.39 -2.39 -0.02 0.86 16 31 H 0.04 1.51 6.33 -2.39 -0.02 1.49 16 32 H 0.25 14.40 8.31 -92.71 -0.77 13.62 16 33 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.07 1.96 6.36 -2.38 -0.02 1.94 16 35 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.14 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 40 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 41 H 0.42 3.88 8.23 -92.71 -0.76 3.11 16 42 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 43 H 0.18 0.64 8.06 -2.91 -0.02 0.61 16 44 H 0.26 -1.13 8.06 -2.91 -0.02 -1.16 16 45 H 0.05 2.01 7.06 -2.39 -0.02 2.00 16 46 H 0.04 1.68 8.03 -2.39 -0.02 1.66 16 Total: -1.00 -83.38 384.54 2.09 -81.29 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 0.24 Total: 6.84 kcal Atomic # 6 Polarization: 22.84 SS G_CDS: 7.10 Total: 29.95 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -7.11 Total: -120.72 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -0.17 Total: -44.03 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -83.38 2.09 -81.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193916001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.715 kcal (2) G-P(sol) polarization free energy of solvation -83.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds