Wall clock time and date at job start Tue Mar 31 2020 18:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36939 * 119.99995 * 2 1 4 4 H 1.07994 * 119.99969 * 161.16730 * 3 2 1 5 5 C 1.38813 * 120.00045 * 340.89855 * 3 2 1 6 6 N 1.31620 * 119.99639 * 346.72914 * 5 3 2 7 7 Si 1.86797 * 120.00161 * 166.73450 * 5 3 2 8 8 H 1.48496 * 109.47108 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47036 * 119.99578 * 7 5 3 10 10 H 1.48492 * 109.47148 * 239.99578 * 7 5 3 11 11 C 1.46491 * 120.00004 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.64414 * 183.13980 * 11 2 1 13 13 C 1.55157 * 110.71951 * 306.47832 * 11 2 1 14 14 C 1.54914 * 101.58199 * 153.86443 * 13 11 2 15 15 N 1.47427 * 104.83164 * 322.99100 * 14 13 11 16 16 C 1.34776 * 125.64728 * 204.09041 * 15 14 13 17 17 O 1.21276 * 119.99997 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.99910 * 0.04329 * 16 15 14 19 19 C 1.53008 * 109.46911 * 180.02562 * 18 16 15 20 20 N 1.46504 * 109.46878 * 180.02562 * 19 18 16 21 21 C 1.34778 * 119.99811 * 179.97438 * 20 19 18 22 22 O 1.21694 * 119.99872 * 0.02562 * 21 20 19 23 23 C 1.46654 * 119.99886 * 179.97438 * 21 20 19 24 24 C 1.36539 * 125.98680 * 180.02562 * 23 21 20 25 25 C 1.40364 * 106.70830 * 179.97438 * 24 23 21 26 26 C 1.35121 * 107.11404 * 0.02562 * 25 24 23 27 27 O 1.33927 * 108.76919 * 359.75510 * 26 25 24 28 28 C 1.47023 * 108.70285 * 24.12901 * 15 14 13 29 29 H 1.08999 * 109.46704 * 84.81349 * 1 2 3 30 30 H 1.08995 * 109.47147 * 204.81433 * 1 2 3 31 31 H 1.08999 * 109.47110 * 324.81531 * 1 2 3 32 32 H 0.97005 * 119.99401 * 180.02562 * 6 5 3 33 33 H 1.08996 * 111.00521 * 271.93953 * 13 11 2 34 34 H 1.08997 * 111.00717 * 35.79034 * 13 11 2 35 35 H 1.08998 * 110.37053 * 204.15026 * 14 13 11 36 36 H 1.08998 * 110.45826 * 81.87536 * 14 13 11 37 37 H 1.09001 * 109.47490 * 299.99548 * 18 16 15 38 38 H 1.09000 * 109.46992 * 60.00285 * 18 16 15 39 39 H 1.08998 * 109.46413 * 299.99538 * 19 18 16 40 40 H 1.08992 * 109.46981 * 59.99663 * 19 18 16 41 41 H 0.96998 * 120.00069 * 359.97438 * 20 19 18 42 42 H 1.08010 * 126.64532 * 359.96381 * 24 23 21 43 43 H 1.08005 * 126.43797 * 180.02562 * 25 24 23 44 44 H 1.08000 * 125.61495 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.87916 * 239.52208 * 28 15 14 46 46 H 1.08996 * 110.01288 * 118.42895 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1863 1.2110 0.3019 5 6 1.5130 2.3550 -0.3934 6 7 0.3510 2.2964 -1.0087 7 14 2.3054 4.0113 -0.0497 8 1 3.5996 3.8054 0.6488 9 1 2.5420 4.7224 -1.3318 10 1 1.4044 4.8227 0.8074 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0922 0.0564 13 6 1.7248 -2.1749 1.1679 14 6 2.0499 -3.5860 0.6174 15 7 1.7501 -3.5071 -0.8239 16 6 1.4406 -4.5496 -1.6200 17 8 1.2120 -4.3669 -2.7970 18 6 1.3783 -5.9423 -1.0477 19 6 1.0098 -6.9325 -2.1544 20 7 0.9486 -8.2863 -1.5978 21 6 0.6390 -9.3288 -2.3940 22 8 0.4108 -9.1456 -3.5752 23 6 0.5783 -10.6841 -1.8370 24 6 0.2790 -11.8229 -2.5282 25 6 0.3364 -12.8807 -1.6073 26 6 0.6636 -12.3479 -0.4095 27 8 0.8134 -11.0248 -0.5529 28 6 1.8455 -2.1029 -1.2491 29 1 -0.3633 0.0929 -1.0235 30 1 -0.3633 -0.9327 0.4313 31 1 -0.3633 0.8399 0.5921 32 1 -0.0938 3.1133 -1.2839 33 1 2.2915 -1.9697 2.0760 34 1 0.6550 -2.0607 1.3427 35 1 1.4184 -4.3346 1.0958 36 1 3.1023 -3.8227 0.7736 37 1 2.3502 -6.2081 -0.6318 38 1 0.6243 -5.9785 -0.2614 39 1 0.0380 -6.6669 -2.5706 40 1 1.7640 -6.8960 -2.9404 41 1 1.1309 -8.4324 -0.6564 42 1 0.0435 -11.8957 -3.5797 43 1 0.1534 -13.9243 -1.8169 44 1 0.7883 -12.8988 0.5110 45 1 0.8901 -1.7736 -1.6577 46 1 2.6275 -1.9930 -2.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193916018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:10 Heat of formation + Delta-G solvation = -20.254668 kcal Electronic energy + Delta-G solvation = -27883.888236 eV Core-core repulsion = 23776.556194 eV Total energy + Delta-G solvation = -4107.332042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.10451 -40.08117 -39.53469 -37.59119 -35.52528 -34.84378 -33.51892 -32.00357 -31.37430 -30.07288 -29.67049 -27.93683 -26.09757 -25.14366 -23.48620 -22.51788 -22.37718 -22.09076 -20.80648 -19.44648 -19.19758 -18.58741 -17.19792 -17.09694 -16.81817 -16.68937 -16.23085 -15.83163 -15.57191 -14.97462 -14.86749 -14.48887 -14.23510 -13.61862 -13.51464 -13.44546 -13.39013 -13.22922 -13.09561 -12.65792 -12.53605 -12.20747 -12.08395 -11.92183 -11.70736 -11.53714 -10.95246 -10.84405 -10.69143 -10.59969 -10.51612 -10.46168 -10.29483 -9.92658 -9.84392 -9.69580 -9.53623 -9.09994 -8.60617 -8.36295 -6.89583 -5.78589 -3.23505 0.64484 1.91762 2.21943 2.71555 2.74966 2.83253 3.28370 3.35227 3.42252 3.44175 4.21516 4.43326 4.44843 4.46125 4.61882 4.64099 4.79623 4.93725 5.14581 5.18043 5.21345 5.29320 5.32341 5.43768 5.46301 5.55446 5.63525 5.74016 5.74840 5.84425 5.86207 5.94362 5.97295 6.28786 6.31780 6.36047 6.47492 6.62250 6.79176 6.82135 7.06712 7.35072 7.67968 7.71671 7.74741 7.77096 8.28407 8.32585 9.15736 9.78437 10.25351 11.26071 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.036665 B = 0.001735 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.480136 B =16132.619362 C =16525.240863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.260 4.260 4 H 0.073 0.927 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.100 3.900 15 N -0.612 5.612 16 C 0.526 3.474 17 O -0.541 6.541 18 C -0.149 4.149 19 C 0.133 3.867 20 N -0.720 5.720 21 C 0.602 3.398 22 O -0.514 6.514 23 C -0.079 4.079 24 C -0.120 4.120 25 C -0.225 4.225 26 C -0.007 4.007 27 O -0.165 6.165 28 C 0.085 3.915 29 H 0.029 0.971 30 H 0.001 0.999 31 H 0.048 0.952 32 H 0.253 0.747 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.405 0.595 42 H 0.161 0.839 43 H 0.157 0.843 44 H 0.211 0.789 45 H 0.073 0.927 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.769 -28.638 6.702 29.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.390 4.390 4 H 0.091 0.909 5 C -0.196 4.196 6 N -0.550 5.550 7 Si 0.738 3.262 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.216 1.216 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.194 4.194 14 C -0.023 4.023 15 N -0.346 5.346 16 C 0.314 3.686 17 O -0.419 6.419 18 C -0.189 4.189 19 C 0.010 3.990 20 N -0.371 5.371 21 C 0.388 3.612 22 O -0.391 6.391 23 C -0.131 4.131 24 C -0.141 4.141 25 C -0.244 4.244 26 C -0.077 4.077 27 O -0.060 6.060 28 C -0.039 4.039 29 H 0.048 0.952 30 H 0.019 0.981 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.239 0.761 42 H 0.179 0.821 43 H 0.175 0.825 44 H 0.228 0.772 45 H 0.091 0.909 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.424 -27.998 5.321 28.534 hybrid contribution 0.371 0.581 0.572 0.896 sum 1.795 -27.416 5.893 28.100 Atomic orbital electron populations 1.20833 0.82225 0.95641 0.99629 1.43973 1.02028 0.99906 1.84821 1.19303 0.96337 0.84549 1.38772 0.90931 1.25001 0.97544 0.98511 0.98576 1.70114 1.16829 1.26688 1.41398 0.86138 0.78542 0.84009 0.77549 1.20291 1.21703 1.21586 1.21340 0.96378 0.85954 0.90110 0.90345 1.23351 1.02900 0.93160 0.99981 1.22345 1.00096 0.99215 0.80634 1.48563 1.68000 1.08036 1.09992 1.19850 0.77367 0.85399 0.86027 1.90749 1.49767 1.85344 1.16003 1.21774 1.04546 0.92846 0.99759 1.21152 1.04074 0.78333 0.95431 1.45883 1.70818 1.07343 1.13106 1.16505 0.77540 0.81521 0.85673 1.90932 1.49630 1.83704 1.14802 1.22106 1.12554 0.95880 0.82524 1.22024 1.00077 0.90458 1.01495 1.21895 1.08590 1.01058 0.92877 1.24436 1.02031 0.80423 1.00789 1.84054 1.68372 1.25286 1.28328 1.22966 1.02416 0.78485 1.00043 0.95225 0.98079 0.93296 0.93648 0.90338 0.90314 0.91343 0.91523 0.88299 0.88255 0.89904 0.89938 0.76061 0.82126 0.82511 0.77248 0.90870 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 7.79 59.85 0.47 4.31 16 2 N -0.59 -13.99 2.94 -171.39 -0.50 -14.49 16 3 C -0.26 -6.88 9.67 -15.06 -0.15 -7.02 16 4 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 5 C 0.00 0.06 5.11 -17.43 -0.09 -0.03 16 6 N -0.91 -26.04 10.50 55.49 0.58 -25.45 16 7 Si 0.91 21.41 29.57 -169.99 -5.03 16.38 16 8 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 C 0.17 3.26 3.45 -66.10 -0.23 3.04 16 12 H 0.08 1.46 7.90 -51.93 -0.41 1.05 16 13 C -0.15 -2.24 6.59 -24.58 -0.16 -2.41 16 14 C 0.10 1.16 6.69 -2.53 -0.02 1.14 16 15 N -0.61 -9.26 3.33 -170.52 -0.57 -9.83 16 16 C 0.53 7.89 7.85 -10.99 -0.09 7.81 16 17 O -0.54 -10.53 16.31 5.56 0.09 -10.44 16 18 C -0.15 -1.42 4.82 -27.88 -0.13 -1.55 16 19 C 0.13 1.47 4.96 -4.04 -0.02 1.45 16 20 N -0.72 -6.59 5.55 -61.62 -0.34 -6.94 16 21 C 0.60 6.90 7.79 -12.86 -0.10 6.80 16 22 O -0.51 -7.80 16.86 5.19 0.09 -7.71 16 23 C -0.08 -0.75 7.13 -36.80 -0.26 -1.01 16 24 C -0.12 -1.02 10.62 -39.40 -0.42 -1.44 16 25 C -0.23 -1.33 10.87 -39.89 -0.43 -1.76 16 26 C -0.01 -0.03 12.08 29.62 0.36 0.32 16 27 O -0.17 -1.24 10.40 5.01 0.05 -1.19 16 28 C 0.09 1.61 6.51 -3.06 -0.02 1.59 16 29 H 0.03 0.78 7.38 -51.93 -0.38 0.40 16 30 H 0.00 0.02 6.03 -51.93 -0.31 -0.30 16 31 H 0.05 1.26 7.08 -51.93 -0.37 0.90 16 32 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.24 6.05 -51.93 -0.31 0.93 16 35 H 0.07 0.61 7.48 -51.93 -0.39 0.22 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.74 7.85 -51.93 -0.41 0.33 16 39 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 40 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 41 H 0.40 2.54 8.23 -40.82 -0.34 2.21 16 42 H 0.16 1.29 8.06 -52.48 -0.42 0.86 16 43 H 0.16 0.54 8.06 -52.48 -0.42 0.12 16 44 H 0.21 0.17 8.06 -52.49 -0.42 -0.25 16 45 H 0.07 1.61 7.13 -51.93 -0.37 1.24 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -34.76 382.88 -7.79 -42.54 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.64 Total: 0.10 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -1.29 Total: 11.25 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.83 Total: -56.70 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.23 Total: -19.34 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.76 -7.79 -42.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193916018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.286 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds