Wall clock time and date at job start Tue Mar 31 2020 18:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36939 * 119.99995 * 2 1 4 4 H 1.07994 * 119.99969 * 161.16730 * 3 2 1 5 5 C 1.38813 * 120.00045 * 340.89855 * 3 2 1 6 6 N 1.31620 * 119.99639 * 346.72914 * 5 3 2 7 7 Si 1.86797 * 120.00161 * 166.73450 * 5 3 2 8 8 H 1.48496 * 109.47108 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47036 * 119.99578 * 7 5 3 10 10 H 1.48492 * 109.47148 * 239.99578 * 7 5 3 11 11 C 1.46491 * 120.00004 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.64414 * 183.13980 * 11 2 1 13 13 C 1.55157 * 110.71951 * 306.47832 * 11 2 1 14 14 C 1.54914 * 101.58199 * 153.86443 * 13 11 2 15 15 N 1.47427 * 104.83164 * 322.99100 * 14 13 11 16 16 C 1.34776 * 125.64728 * 204.09041 * 15 14 13 17 17 O 1.21276 * 119.99997 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.99910 * 0.04329 * 16 15 14 19 19 C 1.53008 * 109.46911 * 180.02562 * 18 16 15 20 20 N 1.46504 * 109.46878 * 180.02562 * 19 18 16 21 21 C 1.34778 * 119.99811 * 179.97438 * 20 19 18 22 22 O 1.21694 * 119.99872 * 0.02562 * 21 20 19 23 23 C 1.46654 * 119.99886 * 179.97438 * 21 20 19 24 24 C 1.36539 * 125.98680 * 180.02562 * 23 21 20 25 25 C 1.40364 * 106.70830 * 179.97438 * 24 23 21 26 26 C 1.35121 * 107.11404 * 0.02562 * 25 24 23 27 27 O 1.33927 * 108.76919 * 359.75510 * 26 25 24 28 28 C 1.47023 * 108.70285 * 24.12901 * 15 14 13 29 29 H 1.08999 * 109.46704 * 84.81349 * 1 2 3 30 30 H 1.08995 * 109.47147 * 204.81433 * 1 2 3 31 31 H 1.08999 * 109.47110 * 324.81531 * 1 2 3 32 32 H 0.97005 * 119.99401 * 180.02562 * 6 5 3 33 33 H 1.08996 * 111.00521 * 271.93953 * 13 11 2 34 34 H 1.08997 * 111.00717 * 35.79034 * 13 11 2 35 35 H 1.08998 * 110.37053 * 204.15026 * 14 13 11 36 36 H 1.08998 * 110.45826 * 81.87536 * 14 13 11 37 37 H 1.09001 * 109.47490 * 299.99548 * 18 16 15 38 38 H 1.09000 * 109.46992 * 60.00285 * 18 16 15 39 39 H 1.08998 * 109.46413 * 299.99538 * 19 18 16 40 40 H 1.08992 * 109.46981 * 59.99663 * 19 18 16 41 41 H 0.96998 * 120.00069 * 359.97438 * 20 19 18 42 42 H 1.08010 * 126.64532 * 359.96381 * 24 23 21 43 43 H 1.08005 * 126.43797 * 180.02562 * 25 24 23 44 44 H 1.08000 * 125.61495 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.87916 * 239.52208 * 28 15 14 46 46 H 1.08996 * 110.01288 * 118.42895 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1863 1.2110 0.3019 5 6 1.5130 2.3550 -0.3934 6 7 0.3510 2.2964 -1.0087 7 14 2.3054 4.0113 -0.0497 8 1 3.5996 3.8054 0.6488 9 1 2.5420 4.7224 -1.3318 10 1 1.4044 4.8227 0.8074 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0922 0.0564 13 6 1.7248 -2.1749 1.1679 14 6 2.0499 -3.5860 0.6174 15 7 1.7501 -3.5071 -0.8239 16 6 1.4406 -4.5496 -1.6200 17 8 1.2120 -4.3669 -2.7970 18 6 1.3783 -5.9423 -1.0477 19 6 1.0098 -6.9325 -2.1544 20 7 0.9486 -8.2863 -1.5978 21 6 0.6390 -9.3288 -2.3940 22 8 0.4108 -9.1456 -3.5752 23 6 0.5783 -10.6841 -1.8370 24 6 0.2790 -11.8229 -2.5282 25 6 0.3364 -12.8807 -1.6073 26 6 0.6636 -12.3479 -0.4095 27 8 0.8134 -11.0248 -0.5529 28 6 1.8455 -2.1029 -1.2491 29 1 -0.3633 0.0929 -1.0235 30 1 -0.3633 -0.9327 0.4313 31 1 -0.3633 0.8399 0.5921 32 1 -0.0938 3.1133 -1.2839 33 1 2.2915 -1.9697 2.0760 34 1 0.6550 -2.0607 1.3427 35 1 1.4184 -4.3346 1.0958 36 1 3.1023 -3.8227 0.7736 37 1 2.3502 -6.2081 -0.6318 38 1 0.6243 -5.9785 -0.2614 39 1 0.0380 -6.6669 -2.5706 40 1 1.7640 -6.8960 -2.9404 41 1 1.1309 -8.4324 -0.6564 42 1 0.0435 -11.8957 -3.5797 43 1 0.1534 -13.9243 -1.8169 44 1 0.7883 -12.8988 0.5110 45 1 0.8901 -1.7736 -1.6577 46 1 2.6275 -1.9930 -2.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193916018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:09 Heat of formation + Delta-G solvation = -45.964728 kcal Electronic energy + Delta-G solvation = -27885.003108 eV Core-core repulsion = 23776.556194 eV Total energy + Delta-G solvation = -4108.446914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.63034 -41.22545 -40.52766 -38.99833 -36.59358 -36.42538 -34.05203 -33.56179 -32.50018 -31.24075 -30.59400 -29.32170 -28.08994 -26.21543 -24.76757 -23.85878 -23.27615 -22.65274 -21.55416 -20.87853 -20.27177 -19.42636 -18.96662 -18.28311 -17.60778 -17.40231 -17.27419 -16.91866 -16.69390 -16.46446 -16.00490 -15.64703 -15.28595 -15.03509 -14.94593 -14.52837 -14.39271 -14.10625 -13.96516 -13.93505 -13.62965 -13.53003 -13.30230 -13.12963 -12.94999 -12.78739 -12.55605 -12.49169 -12.38712 -12.17823 -12.05681 -11.77729 -11.63580 -11.38878 -11.04751 -10.98244 -10.64910 -10.40603 -9.65658 -9.63463 -8.86766 -7.84194 -5.30982 0.01118 1.43531 1.46993 1.48128 1.52947 1.58804 1.59332 1.89605 2.05626 2.30092 2.51727 3.28455 3.47225 3.58481 3.71992 3.77347 3.86798 3.96106 4.01997 4.13147 4.14300 4.29672 4.38431 4.45104 4.49630 4.61953 4.71222 4.77718 4.81266 4.84010 4.92714 4.93061 4.97223 5.06748 5.14786 5.23046 5.24864 5.34624 5.40016 5.46312 5.63271 5.72094 5.82208 6.29060 6.36745 6.58192 6.94680 7.10821 7.13955 7.84106 8.26811 9.19456 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.036665 B = 0.001735 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.480136 B =16132.619362 C =16525.240863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.603 5.603 3 C -0.262 4.262 4 H 0.082 0.918 5 C -0.059 4.059 6 N -0.943 5.943 7 Si 0.972 3.028 8 H -0.260 1.260 9 H -0.298 1.298 10 H -0.292 1.292 11 C 0.164 3.836 12 H 0.083 0.917 13 C -0.142 4.142 14 C 0.104 3.896 15 N -0.612 5.612 16 C 0.519 3.481 17 O -0.598 6.598 18 C -0.128 4.128 19 C 0.139 3.861 20 N -0.701 5.701 21 C 0.598 3.402 22 O -0.566 6.566 23 C -0.108 4.108 24 C -0.128 4.128 25 C -0.237 4.237 26 C 0.016 3.984 27 O -0.166 6.166 28 C 0.096 3.904 29 H -0.009 1.009 30 H 0.033 0.967 31 H 0.022 0.978 32 H 0.247 0.753 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.423 0.577 42 H 0.154 0.846 43 H 0.181 0.819 44 H 0.258 0.742 45 H 0.031 0.969 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.399 -31.887 10.714 33.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.325 5.325 3 C -0.392 4.392 4 H 0.100 0.900 5 C -0.253 4.253 6 N -0.591 5.591 7 Si 0.801 3.199 8 H -0.184 1.184 9 H -0.226 1.226 10 H -0.219 1.219 11 C 0.055 3.945 12 H 0.102 0.898 13 C -0.181 4.181 14 C -0.017 4.017 15 N -0.345 5.345 16 C 0.309 3.691 17 O -0.480 6.480 18 C -0.167 4.167 19 C 0.015 3.985 20 N -0.353 5.353 21 C 0.386 3.614 22 O -0.447 6.447 23 C -0.160 4.160 24 C -0.149 4.149 25 C -0.256 4.256 26 C -0.053 4.053 27 O -0.061 6.061 28 C -0.030 4.030 29 H 0.009 0.991 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.120 0.880 34 H 0.085 0.915 35 H 0.131 0.869 36 H 0.117 0.883 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.261 0.739 42 H 0.171 0.829 43 H 0.199 0.801 44 H 0.274 0.726 45 H 0.049 0.951 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.104 -31.299 9.428 32.835 hybrid contribution -0.108 1.421 -0.661 1.571 sum 2.996 -29.878 8.768 31.281 Atomic orbital electron populations 1.20464 0.82852 0.96024 0.96997 1.44173 1.02014 1.01199 1.85076 1.19728 0.96722 0.85646 1.37087 0.89993 1.25811 0.98323 1.01972 0.99208 1.70304 1.18516 1.26896 1.43348 0.85120 0.78237 0.79751 0.76830 1.18429 1.22568 1.21873 1.21598 0.96301 0.84674 0.91920 0.89841 1.23230 1.02327 0.93731 0.98839 1.22645 1.03083 0.98217 0.77747 1.48623 1.67848 1.06189 1.11846 1.20868 0.75742 0.87182 0.85336 1.90734 1.52056 1.86364 1.18822 1.21716 1.07858 0.87916 0.99229 1.20896 1.01957 0.79778 0.95888 1.45632 1.69868 1.06046 1.13746 1.16812 0.76687 0.82672 0.85217 1.90897 1.52107 1.84677 1.16999 1.21652 1.15609 0.94951 0.83775 1.22272 0.99362 0.91454 1.01829 1.22222 1.09072 1.01684 0.92612 1.25415 0.98544 0.79316 1.02031 1.84045 1.68406 1.26683 1.26988 1.22489 0.99408 0.81525 0.99593 0.99114 0.94859 0.95937 0.94414 0.88006 0.91476 0.86907 0.88309 0.84257 0.84670 0.92612 0.92282 0.73914 0.82858 0.80113 0.72620 0.95088 0.94105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.98 7.79 127.77 1.00 9.98 16 2 N -0.60 -29.12 2.94 -696.16 -2.04 -31.16 16 3 C -0.26 -13.94 9.67 84.03 0.81 -13.13 16 4 H 0.08 4.12 7.80 -2.91 -0.02 4.10 16 5 C -0.06 -3.27 5.11 84.86 0.43 -2.83 16 6 N -0.94 -56.65 10.50 21.65 0.23 -56.42 16 7 Si 0.97 44.75 29.57 68.60 2.03 46.78 16 8 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 9 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 10 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 11 C 0.16 6.03 3.45 46.18 0.16 6.19 16 12 H 0.08 2.98 7.90 -2.38 -0.02 2.96 16 13 C -0.14 -3.64 6.59 31.99 0.21 -3.43 16 14 C 0.10 1.88 6.69 86.86 0.58 2.46 16 15 N -0.61 -17.33 3.33 -811.79 -2.70 -20.03 16 16 C 0.52 14.95 7.85 87.66 0.69 15.64 16 17 O -0.60 -24.24 16.31 -3.02 -0.05 -24.29 16 18 C -0.13 -1.98 4.82 29.85 0.14 -1.84 16 19 C 0.14 3.00 4.96 86.38 0.43 3.43 16 20 N -0.70 -11.85 5.55 -467.09 -2.59 -14.45 16 21 C 0.60 13.84 7.79 86.44 0.67 14.52 16 22 O -0.57 -18.28 16.86 -4.33 -0.07 -18.36 16 23 C -0.11 -1.96 7.13 24.07 0.17 -1.78 16 24 C -0.13 -2.10 10.62 22.39 0.24 -1.86 16 25 C -0.24 -2.15 10.87 22.07 0.24 -1.91 16 26 C 0.02 0.10 12.08 67.10 0.81 0.91 16 27 O -0.17 -2.00 10.40 -4.97 -0.05 -2.05 16 28 C 0.10 3.69 6.51 86.73 0.56 4.25 16 29 H -0.01 -0.54 7.38 -2.39 -0.02 -0.56 16 30 H 0.03 1.39 6.03 -2.39 -0.01 1.38 16 31 H 0.02 1.19 7.08 -2.39 -0.02 1.18 16 32 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 33 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.07 1.91 6.05 -2.39 -0.01 1.89 16 35 H 0.11 1.17 7.48 -2.39 -0.02 1.15 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.14 1.25 7.85 -2.39 -0.02 1.23 16 39 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 40 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 41 H 0.42 3.92 8.23 -92.71 -0.76 3.16 16 42 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 43 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 44 H 0.26 -1.13 8.06 -2.91 -0.02 -1.15 16 45 H 0.03 1.44 7.13 -2.39 -0.02 1.42 16 46 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -85.02 382.88 2.14 -82.88 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 0.24 Total: 6.51 kcal Atomic # 6 Polarization: 23.44 SS G_CDS: 7.15 Total: 30.59 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -7.11 Total: -122.06 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -0.17 Total: -44.70 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -85.02 2.14 -82.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193916018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.917 kcal (2) G-P(sol) polarization free energy of solvation -85.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds