Wall clock time and date at job start Tue Mar 31 2020 18:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34598 * 119.47924 * 2 1 4 4 C 1.38001 * 120.45687 * 179.73267 * 3 2 1 5 5 C 1.47459 * 120.25523 * 180.30789 * 4 3 2 6 6 O 1.21606 * 119.99784 * 255.08840 * 5 4 3 7 7 N 1.34776 * 120.00096 * 75.08982 * 5 4 3 8 8 C 1.47511 * 118.75538 * 5.17100 * 7 5 4 9 9 C 1.53577 * 111.02439 * 138.35180 * 8 7 5 10 10 C 1.51531 * 109.58497 * 320.02021 * 9 8 7 11 11 O 1.42155 * 108.75653 * 91.40041 * 10 9 8 12 12 C 1.38014 * 119.44015 * 272.77349 * 11 10 9 13 13 H 1.09001 * 109.46907 * 303.42737 * 12 11 10 14 14 C 1.52999 * 109.47281 * 183.43031 * 12 11 10 15 15 N 1.46501 * 109.46959 * 64.99933 * 14 12 11 16 16 C 1.36936 * 119.99731 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00277 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99935 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99562 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00240 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47083 * 90.00289 * 20 18 16 22 22 H 1.48502 * 109.47313 * 210.00499 * 20 18 16 23 23 H 1.48504 * 109.46925 * 330.00429 * 20 18 16 24 24 C 1.45115 * 118.75734 * 184.90605 * 7 5 4 25 25 C 1.41589 * 119.48249 * 0.56809 * 4 3 2 26 26 C 1.35970 * 119.01525 * 359.44237 * 25 4 3 27 27 C 1.34539 * 119.47456 * 180.02562 * 2 1 3 28 28 O 1.21961 * 119.75395 * 359.97438 * 27 2 1 29 29 H 1.09001 * 109.47398 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47031 * 299.97987 * 1 2 3 31 31 H 1.09010 * 109.47063 * 59.97787 * 1 2 3 32 32 H 1.08000 * 119.76864 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.16748 * 258.75014 * 8 7 5 34 34 H 1.09000 * 109.16807 * 18.01105 * 8 7 5 35 35 H 1.08997 * 109.45002 * 80.06126 * 9 8 7 36 36 H 1.09004 * 109.44658 * 200.01139 * 9 8 7 37 37 H 1.08996 * 109.59619 * 211.18085 * 10 9 8 38 38 H 1.09003 * 109.58957 * 331.47697 * 10 9 8 39 39 H 1.08998 * 109.47264 * 184.99860 * 14 12 11 40 40 H 1.09002 * 109.46798 * 304.99942 * 14 12 11 41 41 H 0.96998 * 119.99875 * 0.02562 * 15 14 12 42 42 H 0.97002 * 119.99570 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.46158 * 29.32313 * 24 7 5 44 44 H 1.08995 * 109.46024 * 149.28709 * 24 7 5 45 45 H 1.08003 * 120.49107 * 179.72037 * 25 4 3 46 46 H 1.08003 * 120.25455 * 180.30446 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1717 0.0000 4 6 3.5072 1.1953 0.0056 5 6 4.2283 2.4815 0.0124 6 8 4.7660 2.8824 -1.0020 7 7 4.2914 3.2127 1.1428 8 6 3.7303 2.6488 2.3850 9 6 4.6465 2.9362 3.5836 10 6 6.0942 2.7727 3.1671 11 8 6.5874 4.0303 2.7245 12 6 6.4200 4.3984 1.4049 13 1 6.8629 3.6415 0.7576 14 6 7.1059 5.7438 1.1597 15 7 8.5521 5.5946 1.3400 16 6 9.3781 6.6736 1.1706 17 1 8.9634 7.6347 0.9044 18 6 10.7484 6.5325 1.3419 19 7 11.2537 5.3613 1.6668 20 14 11.8751 8.0044 1.1115 21 1 12.0367 8.7116 2.4072 22 1 13.2019 7.5418 0.6311 23 1 11.2822 8.9300 0.1130 24 6 4.9140 4.5226 1.0931 25 6 4.2250 -0.0252 -0.0010 26 6 3.5344 -1.1965 -0.0010 27 6 2.1270 -1.1713 -0.0005 28 8 1.5030 -2.2192 -0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5135 0.8901 31 1 -0.3634 0.5142 -0.8899 32 1 1.5751 2.0999 0.0004 33 1 2.7513 3.0913 2.5686 34 1 3.6198 1.5704 2.2705 35 1 4.4814 3.9563 3.9301 36 1 4.4198 2.2379 4.3893 37 1 6.6825 2.4282 4.0175 38 1 6.1617 2.0459 2.3575 39 1 6.8990 6.0772 0.1428 40 1 6.7255 6.4800 1.8679 41 1 8.9246 4.7314 1.5787 42 1 12.2113 5.2626 1.7861 43 1 4.7876 4.9472 0.0972 44 1 4.4445 5.1759 1.8285 45 1 5.3050 -0.0257 -0.0013 46 1 4.0617 -2.1390 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200872769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:18 Heat of formation + Delta-G solvation = -46.764388 kcal Electronic energy + Delta-G solvation = -29510.287808 eV Core-core repulsion = 25401.806218 eV Total energy + Delta-G solvation = -4108.481590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.94857 -40.55323 -38.59858 -37.20576 -35.70645 -35.07310 -34.61188 -32.90193 -31.04312 -30.75406 -28.82330 -28.20973 -26.74464 -25.47051 -24.48282 -23.49942 -22.57004 -21.75629 -20.98006 -19.91228 -18.20332 -18.02271 -17.22513 -17.13816 -16.77404 -16.48641 -16.38711 -16.18358 -15.61472 -15.04436 -14.70831 -14.66936 -14.30710 -13.92664 -13.80422 -13.71059 -13.53193 -13.12501 -13.09834 -12.94764 -12.70934 -12.48521 -12.31687 -12.19433 -12.02315 -11.68341 -11.41128 -11.00272 -10.80583 -10.77270 -10.63163 -10.44296 -10.30525 -10.12129 -9.94927 -9.66595 -9.44674 -8.81973 -8.65891 -8.42115 -6.83737 -5.68423 -2.96589 0.32447 1.15578 1.99703 2.36056 2.76778 3.16343 3.48741 3.53214 3.55336 3.92269 3.96372 4.01087 4.35390 4.43668 4.53482 4.61862 4.63301 4.64762 4.68754 4.85752 4.90734 5.09294 5.19365 5.21883 5.30628 5.40832 5.44359 5.46041 5.50104 5.56801 5.64595 5.73102 5.80579 5.91840 5.94175 5.95957 6.07904 6.33980 6.40676 6.47616 6.65787 6.78241 7.05322 7.51241 7.75549 7.90695 7.99056 8.49890 9.61363 10.19593 10.55268 11.54556 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.002454 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.816951 B =11405.946607 C =11549.699814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.490 5.490 3 C 0.170 3.830 4 C -0.228 4.228 5 C 0.567 3.433 6 O -0.516 6.516 7 N -0.602 5.602 8 C 0.107 3.893 9 C -0.166 4.166 10 C 0.073 3.927 11 O -0.368 6.368 12 C 0.088 3.912 13 H 0.054 0.946 14 C 0.166 3.834 15 N -0.726 5.726 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.081 3.919 25 C 0.012 3.988 26 C -0.237 4.237 27 C 0.514 3.486 28 O -0.547 6.547 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.168 0.832 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.046 0.954 39 H 0.035 0.965 40 H 0.027 0.973 41 H 0.387 0.613 42 H 0.254 0.746 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.142 0.858 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.059 -10.664 1.457 27.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.199 5.199 3 C 0.039 3.961 4 C -0.237 4.237 5 C 0.353 3.647 6 O -0.390 6.390 7 N -0.335 5.335 8 C -0.015 4.015 9 C -0.205 4.205 10 C -0.003 4.003 11 O -0.286 6.286 12 C 0.028 3.972 13 H 0.072 0.928 14 C 0.038 3.962 15 N -0.370 5.370 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.043 4.043 25 C -0.010 4.010 26 C -0.259 4.259 27 C 0.316 3.684 28 O -0.430 6.430 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.186 0.814 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.221 0.779 42 H 0.064 0.936 43 H 0.112 0.888 44 H 0.104 0.896 45 H 0.160 0.840 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -25.098 -10.850 1.002 27.361 hybrid contribution 0.615 0.374 -0.147 0.735 sum -24.482 -10.476 0.854 26.643 Atomic orbital electron populations 1.22318 0.76619 1.06730 1.03620 1.45087 1.09729 1.06670 1.58431 1.22000 0.92333 0.90032 0.91753 1.19421 0.92283 0.95055 1.16914 1.17937 0.80064 0.83259 0.83486 1.90882 1.45105 1.70248 1.32801 1.47954 1.58738 1.18090 1.08711 1.21980 0.96610 0.99045 0.83862 1.22505 0.96614 1.04071 0.97268 1.22101 0.92783 0.86292 0.99168 1.86448 1.79739 1.35311 1.27089 1.22184 0.92653 0.98915 0.83464 0.92845 1.20607 0.86328 0.91393 0.97862 1.42224 0.99476 1.11105 1.84212 1.19226 0.88316 0.89959 1.39308 0.91179 1.24741 0.96796 0.96845 1.02714 1.69680 1.11651 1.22140 1.54652 0.86180 0.80429 0.81901 0.77628 1.21784 1.21838 1.20786 1.22382 0.94759 0.83008 1.04109 1.21379 1.01123 0.90145 0.88309 1.22033 0.92224 1.00115 1.11536 1.17261 0.89507 0.82618 0.79000 1.90938 1.69430 1.29907 1.52679 0.87499 0.89817 0.89900 0.81448 0.91522 0.90041 0.89838 0.89687 0.89245 0.93519 0.94764 0.95509 0.77944 0.93609 0.88764 0.89598 0.84017 0.82642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.20 10.55 59.85 0.63 0.83 16 2 N -0.49 -3.55 2.95 -126.73 -0.37 -3.92 16 3 C 0.17 1.10 9.75 -16.43 -0.16 0.94 16 4 C -0.23 -2.05 3.62 -104.95 -0.38 -2.43 16 5 C 0.57 6.74 7.03 -12.50 -0.09 6.66 16 6 O -0.52 -8.46 16.59 5.27 0.09 -8.38 16 7 N -0.60 -6.40 2.20 -174.05 -0.38 -6.79 16 8 C 0.11 0.80 5.79 -3.19 -0.02 0.79 16 9 C -0.17 -1.43 5.78 -27.18 -0.16 -1.59 16 10 C 0.07 0.91 6.37 36.41 0.23 1.14 16 11 O -0.37 -6.25 9.38 -26.53 -0.25 -6.50 16 12 C 0.09 1.50 2.67 -26.05 -0.07 1.43 16 13 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 14 C 0.17 3.45 5.92 -4.04 -0.02 3.43 16 15 N -0.73 -19.23 5.54 -59.91 -0.33 -19.56 16 16 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 17 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 20 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.08 1.04 4.78 -4.11 -0.02 1.02 16 25 C 0.01 0.11 9.86 -39.12 -0.39 -0.28 16 26 C -0.24 -2.19 9.97 -39.44 -0.39 -2.58 16 27 C 0.51 5.32 7.40 -15.41 -0.11 5.21 16 28 O -0.55 -7.42 16.33 4.95 0.08 -7.34 16 29 H 0.11 0.62 6.83 -51.93 -0.35 0.27 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.08 0.21 8.14 -51.92 -0.42 -0.22 16 32 H 0.17 0.59 8.05 -52.49 -0.42 0.17 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.54 6.36 -51.93 -0.33 0.21 16 35 H 0.08 0.79 8.01 -51.93 -0.42 0.37 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.58 7.41 -51.93 -0.38 0.19 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.39 10.93 7.65 -40.82 -0.31 10.62 16 42 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.09 1.29 7.34 -51.93 -0.38 0.91 16 44 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 45 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 46 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 379.07 15.07 5.71 5.71 Total: -1.00 -37.84 379.07 -7.75 -45.58 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.80 Total: 4.59 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -1.19 Total: 7.05 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.36 Total: -58.56 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.08 Total: -22.22 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.84 -7.75 -45.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200872769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.180 kcal (2) G-P(sol) polarization free energy of solvation -37.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds