Wall clock time and date at job start Tue Mar 31 2020 18:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34598 * 119.47924 * 2 1 4 4 C 1.38001 * 120.45687 * 179.73267 * 3 2 1 5 5 C 1.47459 * 120.25523 * 180.30789 * 4 3 2 6 6 O 1.21606 * 119.99784 * 255.08840 * 5 4 3 7 7 N 1.34776 * 120.00096 * 75.08982 * 5 4 3 8 8 C 1.47511 * 118.75538 * 5.17100 * 7 5 4 9 9 C 1.53577 * 111.02439 * 138.35180 * 8 7 5 10 10 C 1.51531 * 109.58497 * 320.02021 * 9 8 7 11 11 O 1.42155 * 108.75653 * 91.40041 * 10 9 8 12 12 C 1.38014 * 119.44015 * 272.77349 * 11 10 9 13 13 H 1.09001 * 109.46907 * 303.42737 * 12 11 10 14 14 C 1.52999 * 109.47281 * 183.43031 * 12 11 10 15 15 N 1.46501 * 109.46959 * 64.99933 * 14 12 11 16 16 C 1.36936 * 119.99731 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00277 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99935 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99562 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00240 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47083 * 90.00289 * 20 18 16 22 22 H 1.48502 * 109.47313 * 210.00499 * 20 18 16 23 23 H 1.48504 * 109.46925 * 330.00429 * 20 18 16 24 24 C 1.45115 * 118.75734 * 184.90605 * 7 5 4 25 25 C 1.41589 * 119.48249 * 0.56809 * 4 3 2 26 26 C 1.35970 * 119.01525 * 359.44237 * 25 4 3 27 27 C 1.34539 * 119.47456 * 180.02562 * 2 1 3 28 28 O 1.21961 * 119.75395 * 359.97438 * 27 2 1 29 29 H 1.09001 * 109.47398 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47031 * 299.97987 * 1 2 3 31 31 H 1.09010 * 109.47063 * 59.97787 * 1 2 3 32 32 H 1.08000 * 119.76864 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.16748 * 258.75014 * 8 7 5 34 34 H 1.09000 * 109.16807 * 18.01105 * 8 7 5 35 35 H 1.08997 * 109.45002 * 80.06126 * 9 8 7 36 36 H 1.09004 * 109.44658 * 200.01139 * 9 8 7 37 37 H 1.08996 * 109.59619 * 211.18085 * 10 9 8 38 38 H 1.09003 * 109.58957 * 331.47697 * 10 9 8 39 39 H 1.08998 * 109.47264 * 184.99860 * 14 12 11 40 40 H 1.09002 * 109.46798 * 304.99942 * 14 12 11 41 41 H 0.96998 * 119.99875 * 0.02562 * 15 14 12 42 42 H 0.97002 * 119.99570 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.46158 * 29.32313 * 24 7 5 44 44 H 1.08995 * 109.46024 * 149.28709 * 24 7 5 45 45 H 1.08003 * 120.49107 * 179.72037 * 25 4 3 46 46 H 1.08003 * 120.25455 * 180.30446 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1717 0.0000 4 6 3.5072 1.1953 0.0056 5 6 4.2283 2.4815 0.0124 6 8 4.7660 2.8824 -1.0020 7 7 4.2914 3.2127 1.1428 8 6 3.7303 2.6488 2.3850 9 6 4.6465 2.9362 3.5836 10 6 6.0942 2.7727 3.1671 11 8 6.5874 4.0303 2.7245 12 6 6.4200 4.3984 1.4049 13 1 6.8629 3.6415 0.7576 14 6 7.1059 5.7438 1.1597 15 7 8.5521 5.5946 1.3400 16 6 9.3781 6.6736 1.1706 17 1 8.9634 7.6347 0.9044 18 6 10.7484 6.5325 1.3419 19 7 11.2537 5.3613 1.6668 20 14 11.8751 8.0044 1.1115 21 1 12.0367 8.7116 2.4072 22 1 13.2019 7.5418 0.6311 23 1 11.2822 8.9300 0.1130 24 6 4.9140 4.5226 1.0931 25 6 4.2250 -0.0252 -0.0010 26 6 3.5344 -1.1965 -0.0010 27 6 2.1270 -1.1713 -0.0005 28 8 1.5030 -2.2192 -0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5135 0.8901 31 1 -0.3634 0.5142 -0.8899 32 1 1.5751 2.0999 0.0004 33 1 2.7513 3.0913 2.5686 34 1 3.6198 1.5704 2.2705 35 1 4.4814 3.9563 3.9301 36 1 4.4198 2.2379 4.3893 37 1 6.6825 2.4282 4.0175 38 1 6.1617 2.0459 2.3575 39 1 6.8990 6.0772 0.1428 40 1 6.7255 6.4800 1.8679 41 1 8.9246 4.7314 1.5787 42 1 12.2113 5.2626 1.7861 43 1 4.7876 4.9472 0.0972 44 1 4.4445 5.1759 1.8285 45 1 5.3050 -0.0257 -0.0013 46 1 4.0617 -2.1390 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200872769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:17 Heat of formation + Delta-G solvation = -73.923717 kcal Electronic energy + Delta-G solvation = -29511.465525 eV Core-core repulsion = 25401.806218 eV Total energy + Delta-G solvation = -4109.659307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.65493 -41.52152 -39.72267 -38.02217 -36.89083 -36.22663 -35.71906 -34.31129 -32.65460 -31.70154 -30.03538 -28.78995 -27.79928 -26.73469 -25.49310 -24.57367 -23.84193 -22.79553 -22.28515 -20.73620 -19.25314 -19.00134 -18.66320 -17.99672 -17.75201 -17.62110 -17.12992 -17.05994 -16.65746 -16.44363 -15.84931 -15.71926 -15.31896 -15.14094 -14.83838 -14.75554 -14.63262 -14.32218 -14.22182 -13.88545 -13.59067 -13.49900 -13.33309 -13.14210 -13.03697 -12.84582 -12.75669 -12.56263 -12.29511 -12.11747 -11.99039 -11.81176 -11.46752 -11.24941 -11.22260 -11.05350 -10.95868 -10.54201 -9.68300 -9.12325 -8.99592 -7.93042 -5.22508 -0.28794 0.40917 1.30309 1.47500 1.50687 1.54406 1.59024 1.94946 2.45799 2.57512 2.74861 3.28361 3.40753 3.51928 3.66173 3.73139 3.77261 3.86916 4.02503 4.07159 4.11834 4.15871 4.32088 4.38725 4.40966 4.44695 4.47268 4.57897 4.71214 4.74945 4.76913 4.82538 4.87742 4.90015 4.91749 5.06359 5.12940 5.15295 5.21633 5.29898 5.48849 5.51085 5.81416 6.20190 6.27810 6.77675 6.78779 7.01119 7.33836 8.08997 8.33119 9.31041 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.002454 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.816951 B =11405.946607 C =11549.699814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.483 5.483 3 C 0.203 3.797 4 C -0.248 4.248 5 C 0.572 3.428 6 O -0.570 6.570 7 N -0.596 5.596 8 C 0.104 3.896 9 C -0.156 4.156 10 C 0.064 3.936 11 O -0.397 6.397 12 C 0.102 3.898 13 H 0.019 0.981 14 C 0.162 3.838 15 N -0.742 5.742 16 C -0.245 4.245 17 H 0.080 0.920 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.979 3.021 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.267 1.267 24 C 0.095 3.905 25 C 0.018 3.982 26 C -0.252 4.252 27 C 0.506 3.494 28 O -0.588 6.588 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.211 0.789 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.040 0.960 39 H 0.037 0.963 40 H 0.035 0.965 41 H 0.372 0.628 42 H 0.251 0.749 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.138 0.862 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.063 -9.395 2.334 29.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.189 5.189 3 C 0.071 3.929 4 C -0.257 4.257 5 C 0.359 3.641 6 O -0.448 6.448 7 N -0.327 5.327 8 C -0.016 4.016 9 C -0.194 4.194 10 C -0.012 4.012 11 O -0.316 6.316 12 C 0.041 3.959 13 H 0.037 0.963 14 C 0.035 3.965 15 N -0.384 5.384 16 C -0.376 4.376 17 H 0.097 0.903 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.807 3.193 21 H -0.212 1.212 22 H -0.223 1.223 23 H -0.192 1.192 24 C -0.030 4.030 25 C -0.004 4.004 26 C -0.273 4.273 27 C 0.310 3.690 28 O -0.474 6.474 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.125 0.875 32 H 0.227 0.773 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.133 0.867 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.204 0.796 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.129 0.871 45 H 0.156 0.844 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -28.181 -9.562 1.907 29.820 hybrid contribution 1.484 -0.026 -0.378 1.532 sum -26.696 -9.589 1.529 28.407 Atomic orbital electron populations 1.22629 0.74301 1.06426 1.06456 1.45182 1.11168 1.06016 1.56502 1.22460 0.91481 0.90899 0.88072 1.19154 0.93374 0.93311 1.19820 1.18264 0.79261 0.83652 0.82877 1.90861 1.47479 1.71618 1.34864 1.48010 1.57830 1.17161 1.09722 1.22283 0.97610 1.00115 0.81632 1.22424 0.93592 1.04837 0.98581 1.22374 0.95683 0.84308 0.98854 1.86367 1.81113 1.37547 1.26568 1.21825 0.95080 0.95743 0.83208 0.96316 1.20778 0.83697 0.94044 0.97970 1.42457 1.01798 1.09966 1.84198 1.19692 0.89043 0.90834 1.38080 0.90255 1.25655 0.98486 0.99783 1.03287 1.69857 1.11603 1.24437 1.56416 0.85063 0.77833 0.78547 0.77849 1.21178 1.22259 1.19199 1.22081 0.91863 0.84724 1.04290 1.21350 1.01066 0.90269 0.87700 1.21986 0.92154 1.00292 1.12889 1.17390 0.89758 0.83024 0.78861 1.90916 1.70162 1.31460 1.54895 0.89417 0.86489 0.87533 0.77262 0.87697 0.88707 0.90063 0.86667 0.89102 0.94157 0.94492 0.94712 0.79625 0.94070 0.89590 0.87097 0.84430 0.82585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.55 127.77 1.35 1.55 16 2 N -0.48 -5.54 2.95 -673.09 -1.99 -7.53 16 3 C 0.20 1.84 9.75 84.21 0.82 2.66 16 4 C -0.25 -3.98 3.62 -20.08 -0.07 -4.05 16 5 C 0.57 12.87 7.03 86.67 0.61 13.48 16 6 O -0.57 -18.88 16.59 -4.05 -0.07 -18.95 16 7 N -0.60 -11.35 2.20 -822.84 -1.81 -13.17 16 8 C 0.10 1.14 5.79 86.38 0.50 1.64 16 9 C -0.16 -2.18 5.78 30.31 0.18 -2.01 16 10 C 0.06 1.53 6.37 71.50 0.46 1.99 16 11 O -0.40 -13.58 9.38 -117.86 -1.11 -14.69 16 12 C 0.10 3.53 2.67 31.03 0.08 3.61 16 13 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 14 C 0.16 6.83 5.92 86.38 0.51 7.34 16 15 N -0.74 -40.46 5.54 -343.44 -1.90 -42.36 16 16 C -0.24 -14.29 9.99 84.03 0.84 -13.45 16 17 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 18 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 19 N -0.97 -62.15 13.06 21.65 0.28 -61.87 16 20 Si 0.98 47.48 29.55 68.60 2.03 49.51 16 21 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 22 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 C 0.09 2.32 4.78 87.08 0.42 2.73 16 25 C 0.02 0.32 9.86 22.57 0.22 0.54 16 26 C -0.25 -4.59 9.97 22.36 0.22 -4.37 16 27 C 0.51 9.98 7.40 84.90 0.63 10.60 16 28 O -0.59 -15.96 16.33 -5.19 -0.08 -16.04 16 29 H 0.09 0.86 6.83 -2.39 -0.02 0.84 16 30 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 32 H 0.21 0.19 8.05 -2.91 -0.02 0.16 16 33 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.09 0.85 6.36 -2.39 -0.02 0.84 16 35 H 0.08 1.24 8.01 -2.39 -0.02 1.22 16 36 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.04 1.00 7.41 -2.39 -0.02 0.98 16 39 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.37 22.03 7.65 -92.71 -0.71 21.32 16 42 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.09 2.28 7.34 -2.39 -0.02 2.27 16 44 H 0.11 2.18 8.11 -2.39 -0.02 2.17 16 45 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 46 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -87.01 379.07 2.86 -84.15 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.29 Total: 22.99 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 7.23 Total: 17.95 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -5.42 Total: -124.92 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -1.26 Total: -49.68 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -87.01 2.86 -84.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200872769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.225 kcal (2) G-P(sol) polarization free energy of solvation -87.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds