Wall clock time and date at job start Tue Mar 31 2020 18:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34600 * 119.47358 * 2 1 4 4 C 1.37994 * 120.45499 * 179.97438 * 3 2 1 5 5 C 1.47457 * 120.25793 * 180.02562 * 4 3 2 6 6 O 1.21603 * 120.00269 * 108.09567 * 5 4 3 7 7 N 1.34785 * 119.99839 * 288.09670 * 5 4 3 8 8 C 1.47509 * 118.75372 * 354.28643 * 7 5 4 9 9 C 1.53572 * 111.03095 * 221.60793 * 8 7 5 10 10 C 1.51546 * 109.57575 * 39.97894 * 9 8 7 11 11 O 1.42141 * 108.75627 * 268.60060 * 10 9 8 12 12 C 1.38017 * 119.44753 * 87.23189 * 11 10 9 13 13 H 1.09005 * 109.46426 * 56.56831 * 12 11 10 14 14 C 1.52995 * 109.47525 * 176.56979 * 12 11 10 15 15 N 1.46509 * 109.46990 * 300.00777 * 14 12 11 16 16 C 1.36930 * 120.00022 * 179.72240 * 15 14 12 17 17 H 1.08004 * 120.00130 * 0.27807 * 16 15 14 18 18 C 1.38809 * 120.00156 * 180.27670 * 16 15 14 19 19 N 1.31622 * 120.00119 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00238 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46937 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47086 * 120.00032 * 20 18 16 23 23 H 1.48499 * 109.46973 * 240.00013 * 20 18 16 24 24 C 1.45120 * 118.75583 * 174.26852 * 7 5 4 25 25 C 1.41602 * 119.48686 * 0.28055 * 4 3 2 26 26 C 1.35976 * 119.00646 * 359.51157 * 25 4 3 27 27 C 1.34536 * 119.47751 * 180.02562 * 2 1 3 28 28 O 1.21956 * 119.75043 * 359.97361 * 27 2 1 29 29 H 1.08995 * 109.47285 * 89.99705 * 1 2 3 30 30 H 1.08997 * 109.46549 * 210.00105 * 1 2 3 31 31 H 1.08998 * 109.46929 * 329.99533 * 1 2 3 32 32 H 1.07995 * 119.77194 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.17097 * 342.01196 * 8 7 5 34 34 H 1.08998 * 109.16397 * 101.21659 * 8 7 5 35 35 H 1.08993 * 109.45434 * 160.01374 * 9 8 7 36 36 H 1.09005 * 109.45440 * 279.95248 * 9 8 7 37 37 H 1.08995 * 109.58774 * 28.38458 * 10 9 8 38 38 H 1.09004 * 109.58326 * 148.81367 * 10 9 8 39 39 H 1.08998 * 109.47588 * 180.02562 * 14 12 11 40 40 H 1.08997 * 109.47542 * 60.00705 * 14 12 11 41 41 H 0.97005 * 119.99835 * 0.02562 * 15 14 12 42 42 H 0.97001 * 120.00453 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.46384 * 330.72071 * 24 7 5 44 44 H 1.08998 * 109.44721 * 210.75185 * 24 7 5 45 45 H 1.07995 * 120.49455 * 179.72215 * 25 4 3 46 46 H 1.07999 * 120.25135 * 180.24766 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1274 1.1718 0.0000 4 6 3.5071 1.1954 0.0005 5 6 4.2282 2.4817 0.0011 6 8 4.8105 2.8519 1.0024 7 7 4.2419 3.2470 -1.1083 8 6 3.6368 2.7159 -2.3443 9 6 4.5027 3.0477 -3.5684 10 6 5.9671 2.8845 -3.2138 11 8 6.4675 4.1324 -2.7527 12 6 6.3493 4.4591 -1.4169 13 1 6.8232 3.6868 -0.8109 14 6 7.0339 5.8025 -1.1579 15 7 8.4519 5.7046 -1.5132 16 6 9.2703 6.7930 -1.3700 17 1 8.8716 7.7224 -0.9908 18 6 10.6125 6.7019 -1.7121 19 7 11.0984 5.5695 -2.1746 20 14 11.7293 8.1865 -1.5160 21 1 10.9451 9.3286 -0.9813 22 1 12.8297 7.8573 -0.5749 23 1 12.3006 8.5540 -2.8365 24 6 4.8510 4.5625 -1.0414 25 6 4.2251 -0.0250 -0.0050 26 6 3.5345 -1.1963 -0.0005 27 6 2.1271 -1.1712 -0.0005 28 8 1.5032 -2.2191 -0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.5751 2.0999 0.0004 33 1 3.5383 1.6339 -2.2582 34 1 2.6480 3.1551 -2.4759 35 1 4.2497 2.3725 -4.3858 36 1 4.3164 4.0764 -3.8769 37 1 6.0716 2.1360 -2.4284 38 1 6.5241 2.5710 -4.0968 39 1 6.9410 6.0603 -0.1029 40 1 6.5600 6.5747 -1.7638 41 1 8.8099 4.8700 -1.8541 42 1 12.0363 5.5059 -2.4141 43 1 4.7568 4.9554 -0.0290 44 1 4.3472 5.2316 -1.7389 45 1 5.3050 -0.0255 -0.0091 46 1 4.0618 -2.1389 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200872770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:22 Heat of formation + Delta-G solvation = -46.841179 kcal Electronic energy + Delta-G solvation = -29510.519623 eV Core-core repulsion = 25402.034703 eV Total energy + Delta-G solvation = -4108.484920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.95104 -40.54301 -38.58944 -37.20977 -35.70818 -35.07729 -34.59501 -32.88826 -31.04420 -30.75770 -28.80777 -28.21110 -26.73598 -25.47784 -24.49453 -23.50687 -22.57867 -21.76357 -20.95186 -19.91368 -18.20215 -18.00507 -17.21505 -17.13556 -16.78684 -16.47608 -16.38901 -16.18707 -15.62402 -15.03872 -14.70283 -14.68103 -14.30485 -13.93364 -13.75371 -13.71091 -13.53504 -13.15313 -13.09324 -12.93978 -12.72471 -12.50178 -12.33824 -12.19536 -12.00521 -11.68757 -11.40595 -11.00457 -10.80812 -10.78202 -10.63373 -10.44870 -10.30324 -10.10914 -9.93018 -9.66744 -9.43636 -8.82301 -8.65192 -8.42498 -6.83131 -5.68220 -2.96301 0.32318 1.14620 1.99324 2.36336 2.76537 3.17011 3.48401 3.53418 3.56040 3.92372 3.94978 4.00495 4.33508 4.42708 4.53690 4.58936 4.63042 4.67896 4.68598 4.84257 4.90922 5.05774 5.18087 5.22188 5.31006 5.41094 5.44378 5.46080 5.49574 5.56626 5.64742 5.73075 5.80858 5.92244 5.94238 5.96120 6.08118 6.34484 6.40624 6.47485 6.66045 6.78429 7.05228 7.51164 7.76119 7.90375 7.99956 8.50122 9.61768 10.20277 10.56189 11.54771 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024576 B = 0.002436 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.045236 B =11489.863963 C =11602.383877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.490 5.490 3 C 0.169 3.831 4 C -0.228 4.228 5 C 0.567 3.433 6 O -0.516 6.516 7 N -0.603 5.603 8 C 0.107 3.893 9 C -0.166 4.166 10 C 0.074 3.926 11 O -0.367 6.367 12 C 0.088 3.912 13 H 0.053 0.947 14 C 0.166 3.834 15 N -0.725 5.725 16 C -0.236 4.236 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.081 3.919 25 C 0.013 3.987 26 C -0.238 4.238 27 C 0.513 3.487 28 O -0.546 6.546 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.168 0.832 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.035 0.965 40 H 0.026 0.974 41 H 0.387 0.613 42 H 0.253 0.747 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.142 0.858 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.912 -11.016 0.017 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.199 5.199 3 C 0.038 3.962 4 C -0.237 4.237 5 C 0.353 3.647 6 O -0.391 6.391 7 N -0.336 5.336 8 C -0.015 4.015 9 C -0.205 4.205 10 C -0.003 4.003 11 O -0.284 6.284 12 C 0.028 3.972 13 H 0.071 0.929 14 C 0.038 3.962 15 N -0.370 5.370 16 C -0.367 4.367 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.042 4.042 25 C -0.009 4.009 26 C -0.259 4.259 27 C 0.316 3.684 28 O -0.428 6.428 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.186 0.814 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.221 0.779 42 H 0.063 0.937 43 H 0.112 0.888 44 H 0.104 0.896 45 H 0.160 0.840 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -24.940 -11.211 0.468 27.348 hybrid contribution 0.600 0.375 0.065 0.711 sum -24.340 -10.836 0.533 26.648 Atomic orbital electron populations 1.22279 0.76526 1.05445 1.04393 1.45138 1.09712 1.06690 1.58370 1.22064 0.92402 0.89980 0.91759 1.19433 0.92251 0.95072 1.16964 1.17936 0.80312 0.83175 0.83301 1.90877 1.43374 1.71717 1.33116 1.47960 1.58248 1.17194 1.10161 1.21982 0.96230 0.99376 0.83931 1.22506 0.96876 1.04004 0.97070 1.22109 0.92499 0.86508 0.99214 1.86449 1.80663 1.35945 1.25390 1.22272 0.92777 0.99149 0.82967 0.92901 1.20616 0.86725 0.91477 0.97401 1.42221 1.02724 1.13665 1.78361 1.19272 0.90297 0.91392 1.35755 0.91147 1.24738 0.97077 0.97140 1.02166 1.69688 1.13623 1.24484 1.50292 0.86117 0.80879 0.82043 0.77160 1.20583 1.21944 1.21945 1.22490 0.94996 0.82776 1.03975 1.21380 1.01119 0.90134 0.88288 1.22038 0.92230 1.00118 1.11549 1.17247 0.89480 0.82550 0.79155 1.90947 1.69519 1.29903 1.52447 0.90050 0.88374 0.89333 0.81445 0.90055 0.91555 0.89692 0.89828 0.93535 0.89217 0.94777 0.95625 0.77859 0.93669 0.88786 0.89597 0.84015 0.82649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.23 10.33 59.85 0.62 0.84 16 2 N -0.49 -3.51 2.95 -126.73 -0.37 -3.88 16 3 C 0.17 1.07 9.48 -16.43 -0.16 0.92 16 4 C -0.23 -2.04 3.73 -104.95 -0.39 -2.43 16 5 C 0.57 6.70 7.02 -12.50 -0.09 6.61 16 6 O -0.52 -8.40 16.60 5.27 0.09 -8.31 16 7 N -0.60 -6.38 2.19 -173.72 -0.38 -6.76 16 8 C 0.11 0.80 5.69 -3.19 -0.02 0.78 16 9 C -0.17 -1.44 5.79 -27.17 -0.16 -1.60 16 10 C 0.07 0.92 6.37 36.42 0.23 1.15 16 11 O -0.37 -6.27 9.18 -26.54 -0.24 -6.51 16 12 C 0.09 1.51 2.73 -25.78 -0.07 1.44 16 13 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 14 C 0.17 3.44 5.95 -4.04 -0.02 3.42 16 15 N -0.73 -19.20 5.49 -59.91 -0.33 -19.53 16 16 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 17 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 18 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 19 N -0.93 -28.99 13.06 55.49 0.72 -28.26 16 20 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 C 0.08 1.04 4.82 -3.83 -0.02 1.02 16 25 C 0.01 0.11 9.86 -39.11 -0.39 -0.27 16 26 C -0.24 -2.19 9.97 -39.44 -0.39 -2.58 16 27 C 0.51 5.31 7.40 -15.41 -0.11 5.19 16 28 O -0.55 -7.43 16.58 4.96 0.08 -7.35 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.10 0.53 7.36 -51.93 -0.38 0.15 16 31 H 0.09 0.12 8.00 -51.93 -0.42 -0.29 16 32 H 0.17 0.56 8.02 -52.49 -0.42 0.13 16 33 H 0.08 0.53 6.32 -51.93 -0.33 0.20 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 37 H 0.05 0.58 7.40 -51.93 -0.38 0.19 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.39 10.95 7.53 -40.82 -0.31 10.64 16 42 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.09 1.27 7.36 -51.93 -0.38 0.89 16 44 H 0.09 0.98 8.11 -51.93 -0.42 0.55 16 45 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -37.92 378.92 -7.77 -45.69 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.81 Total: 4.37 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -1.21 Total: 6.99 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.36 Total: -58.43 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.07 Total: -22.17 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.92 -7.77 -45.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200872770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.153 kcal (2) G-P(sol) polarization free energy of solvation -37.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds