Wall clock time and date at job start Tue Mar 31 2020 18:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34600 * 119.47358 * 2 1 4 4 C 1.37994 * 120.45499 * 179.97438 * 3 2 1 5 5 C 1.47457 * 120.25793 * 180.02562 * 4 3 2 6 6 O 1.21603 * 120.00269 * 108.09567 * 5 4 3 7 7 N 1.34785 * 119.99839 * 288.09670 * 5 4 3 8 8 C 1.47509 * 118.75372 * 354.28643 * 7 5 4 9 9 C 1.53572 * 111.03095 * 221.60793 * 8 7 5 10 10 C 1.51546 * 109.57575 * 39.97894 * 9 8 7 11 11 O 1.42141 * 108.75627 * 268.60060 * 10 9 8 12 12 C 1.38017 * 119.44753 * 87.23189 * 11 10 9 13 13 H 1.09005 * 109.46426 * 56.56831 * 12 11 10 14 14 C 1.52995 * 109.47525 * 176.56979 * 12 11 10 15 15 N 1.46509 * 109.46990 * 300.00777 * 14 12 11 16 16 C 1.36930 * 120.00022 * 179.72240 * 15 14 12 17 17 H 1.08004 * 120.00130 * 0.27807 * 16 15 14 18 18 C 1.38809 * 120.00156 * 180.27670 * 16 15 14 19 19 N 1.31622 * 120.00119 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00238 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46937 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47086 * 120.00032 * 20 18 16 23 23 H 1.48499 * 109.46973 * 240.00013 * 20 18 16 24 24 C 1.45120 * 118.75583 * 174.26852 * 7 5 4 25 25 C 1.41602 * 119.48686 * 0.28055 * 4 3 2 26 26 C 1.35976 * 119.00646 * 359.51157 * 25 4 3 27 27 C 1.34536 * 119.47751 * 180.02562 * 2 1 3 28 28 O 1.21956 * 119.75043 * 359.97361 * 27 2 1 29 29 H 1.08995 * 109.47285 * 89.99705 * 1 2 3 30 30 H 1.08997 * 109.46549 * 210.00105 * 1 2 3 31 31 H 1.08998 * 109.46929 * 329.99533 * 1 2 3 32 32 H 1.07995 * 119.77194 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.17097 * 342.01196 * 8 7 5 34 34 H 1.08998 * 109.16397 * 101.21659 * 8 7 5 35 35 H 1.08993 * 109.45434 * 160.01374 * 9 8 7 36 36 H 1.09005 * 109.45440 * 279.95248 * 9 8 7 37 37 H 1.08995 * 109.58774 * 28.38458 * 10 9 8 38 38 H 1.09004 * 109.58326 * 148.81367 * 10 9 8 39 39 H 1.08998 * 109.47588 * 180.02562 * 14 12 11 40 40 H 1.08997 * 109.47542 * 60.00705 * 14 12 11 41 41 H 0.97005 * 119.99835 * 0.02562 * 15 14 12 42 42 H 0.97001 * 120.00453 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.46384 * 330.72071 * 24 7 5 44 44 H 1.08998 * 109.44721 * 210.75185 * 24 7 5 45 45 H 1.07995 * 120.49455 * 179.72215 * 25 4 3 46 46 H 1.07999 * 120.25135 * 180.24766 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1274 1.1718 0.0000 4 6 3.5071 1.1954 0.0005 5 6 4.2282 2.4817 0.0011 6 8 4.8105 2.8519 1.0024 7 7 4.2419 3.2470 -1.1083 8 6 3.6368 2.7159 -2.3443 9 6 4.5027 3.0477 -3.5684 10 6 5.9671 2.8845 -3.2138 11 8 6.4675 4.1324 -2.7527 12 6 6.3493 4.4591 -1.4169 13 1 6.8232 3.6868 -0.8109 14 6 7.0339 5.8025 -1.1579 15 7 8.4519 5.7046 -1.5132 16 6 9.2703 6.7930 -1.3700 17 1 8.8716 7.7224 -0.9908 18 6 10.6125 6.7019 -1.7121 19 7 11.0984 5.5695 -2.1746 20 14 11.7293 8.1865 -1.5160 21 1 10.9451 9.3286 -0.9813 22 1 12.8297 7.8573 -0.5749 23 1 12.3006 8.5540 -2.8365 24 6 4.8510 4.5625 -1.0414 25 6 4.2251 -0.0250 -0.0050 26 6 3.5345 -1.1963 -0.0005 27 6 2.1271 -1.1712 -0.0005 28 8 1.5032 -2.2191 -0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.5751 2.0999 0.0004 33 1 3.5383 1.6339 -2.2582 34 1 2.6480 3.1551 -2.4759 35 1 4.2497 2.3725 -4.3858 36 1 4.3164 4.0764 -3.8769 37 1 6.0716 2.1360 -2.4284 38 1 6.5241 2.5710 -4.0968 39 1 6.9410 6.0603 -0.1029 40 1 6.5600 6.5747 -1.7638 41 1 8.8099 4.8700 -1.8541 42 1 12.0363 5.5059 -2.4141 43 1 4.7568 4.9554 -0.0290 44 1 4.3472 5.2316 -1.7389 45 1 5.3050 -0.0255 -0.0091 46 1 4.0618 -2.1389 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200872770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:21 Heat of formation + Delta-G solvation = -74.053134 kcal Electronic energy + Delta-G solvation = -29511.699622 eV Core-core repulsion = 25402.034703 eV Total energy + Delta-G solvation = -4109.664919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.65250 -41.50638 -39.71316 -38.02343 -36.88718 -36.21354 -35.71755 -34.29650 -32.64429 -31.70912 -30.02077 -28.78307 -27.79078 -26.73164 -25.49761 -24.58911 -23.84405 -22.79313 -22.26765 -20.73086 -19.24508 -18.99863 -18.64229 -17.98591 -17.74214 -17.61278 -17.15158 -17.05456 -16.66651 -16.43902 -15.84269 -15.71607 -15.32464 -15.13844 -14.84332 -14.74370 -14.63674 -14.28131 -14.22153 -13.88757 -13.59868 -13.44007 -13.32128 -13.17365 -13.04744 -12.86378 -12.78825 -12.56004 -12.28776 -12.09516 -11.97473 -11.80740 -11.45947 -11.25410 -11.23053 -11.05194 -10.96873 -10.53320 -9.67465 -9.12426 -8.98819 -7.92678 -5.21999 -0.28429 0.40118 1.31642 1.47720 1.49745 1.54669 1.59879 1.95112 2.46496 2.57545 2.75367 3.28619 3.41092 3.51903 3.66041 3.73557 3.77387 3.87281 4.02612 4.06490 4.11855 4.16627 4.32234 4.36757 4.41736 4.43565 4.47303 4.57317 4.71357 4.74973 4.76755 4.81635 4.87420 4.89945 4.91740 5.06500 5.13256 5.15889 5.21940 5.29959 5.49267 5.51468 5.82041 6.20698 6.28277 6.78603 6.78808 7.01506 7.34476 8.09982 8.34164 9.31550 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024576 B = 0.002436 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.045236 B =11489.863963 C =11602.383877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.482 5.482 3 C 0.203 3.797 4 C -0.249 4.249 5 C 0.572 3.428 6 O -0.569 6.569 7 N -0.597 5.597 8 C 0.104 3.896 9 C -0.156 4.156 10 C 0.064 3.936 11 O -0.396 6.396 12 C 0.101 3.899 13 H 0.019 0.981 14 C 0.162 3.838 15 N -0.741 5.741 16 C -0.243 4.243 17 H 0.079 0.921 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.978 3.022 21 H -0.263 1.263 22 H -0.294 1.294 23 H -0.292 1.292 24 C 0.095 3.905 25 C 0.019 3.981 26 C -0.253 4.253 27 C 0.505 3.495 28 O -0.588 6.588 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.212 0.788 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.090 0.910 39 H 0.036 0.964 40 H 0.035 0.965 41 H 0.373 0.627 42 H 0.250 0.750 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.138 0.862 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.991 -9.736 -0.676 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.188 5.188 3 C 0.071 3.929 4 C -0.258 4.258 5 C 0.360 3.640 6 O -0.448 6.448 7 N -0.328 5.328 8 C -0.017 4.017 9 C -0.194 4.194 10 C -0.012 4.012 11 O -0.315 6.315 12 C 0.041 3.959 13 H 0.037 0.963 14 C 0.035 3.965 15 N -0.384 5.384 16 C -0.375 4.375 17 H 0.097 0.903 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.806 3.194 21 H -0.187 1.187 22 H -0.221 1.221 23 H -0.219 1.219 24 C -0.029 4.029 25 C -0.003 4.003 26 C -0.274 4.274 27 C 0.309 3.691 28 O -0.474 6.474 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.144 0.856 32 H 0.229 0.771 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.108 0.892 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.205 0.795 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.128 0.872 45 H 0.156 0.844 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -28.097 -9.914 -0.246 29.795 hybrid contribution 1.497 -0.030 0.245 1.518 sum -26.599 -9.944 -0.001 28.397 Atomic orbital electron populations 1.22600 0.74195 1.06488 1.05963 1.45223 1.11164 1.06029 1.56430 1.22546 0.91533 0.90879 0.87978 1.19169 0.93374 0.93321 1.19893 1.18256 0.79504 0.83587 0.82674 1.90857 1.45737 1.73017 1.35187 1.48012 1.57439 1.16233 1.11129 1.22284 0.97250 1.00488 0.81637 1.22424 0.93759 1.04674 0.98585 1.22374 0.95438 0.84566 0.98805 1.86367 1.82016 1.38180 1.24974 1.21926 0.95196 0.95926 0.82829 0.96259 1.20789 0.84254 0.94170 0.97318 1.42448 1.04974 1.12552 1.78378 1.19724 0.90946 0.92195 1.34616 0.90281 1.25644 0.98754 1.00150 1.02679 1.69861 1.13691 1.26769 1.51978 0.85006 0.78573 0.78961 0.76813 1.18732 1.22126 1.21922 1.22186 0.92131 0.84541 1.04045 1.21353 1.01061 0.90284 0.87648 1.21989 0.92178 1.00295 1.12957 1.17376 0.89729 0.82971 0.78985 1.90923 1.70260 1.31484 1.54700 0.88227 0.90043 0.85644 0.77122 0.88709 0.87652 0.86706 0.90115 0.94132 0.89192 0.94610 0.94733 0.79524 0.94086 0.89495 0.87170 0.84449 0.82625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.22 10.33 127.77 1.32 1.54 16 2 N -0.48 -5.43 2.95 -673.11 -1.99 -7.42 16 3 C 0.20 1.76 9.48 84.21 0.80 2.56 16 4 C -0.25 -3.94 3.73 -20.08 -0.07 -4.02 16 5 C 0.57 12.73 7.02 86.67 0.61 13.34 16 6 O -0.57 -18.66 16.60 -4.04 -0.07 -18.73 16 7 N -0.60 -11.25 2.19 -821.79 -1.80 -13.05 16 8 C 0.10 1.12 5.69 86.38 0.49 1.61 16 9 C -0.16 -2.21 5.79 30.31 0.18 -2.03 16 10 C 0.06 1.55 6.37 71.51 0.46 2.01 16 11 O -0.40 -13.66 9.18 -117.89 -1.08 -14.75 16 12 C 0.10 3.52 2.73 31.21 0.09 3.60 16 13 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 14 C 0.16 6.81 5.95 86.38 0.51 7.32 16 15 N -0.74 -40.33 5.49 -343.45 -1.89 -42.22 16 16 C -0.24 -14.16 9.99 84.03 0.84 -13.32 16 17 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 18 C -0.08 -4.80 5.50 84.86 0.47 -4.34 16 19 N -0.97 -62.06 13.06 21.65 0.28 -61.78 16 20 Si 0.98 47.46 29.55 68.60 2.03 49.49 16 21 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 23 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 24 C 0.10 2.31 4.82 87.26 0.42 2.73 16 25 C 0.02 0.32 9.86 22.57 0.22 0.55 16 26 C -0.25 -4.61 9.97 22.36 0.22 -4.38 16 27 C 0.51 9.94 7.40 84.90 0.63 10.57 16 28 O -0.59 -15.97 16.58 -5.17 -0.09 -16.05 16 29 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.08 0.73 7.36 -2.39 -0.02 0.71 16 31 H 0.13 -0.32 8.00 -2.39 -0.02 -0.34 16 32 H 0.21 0.05 8.02 -2.91 -0.02 0.03 16 33 H 0.09 0.84 6.32 -2.39 -0.02 0.82 16 34 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.26 8.01 -2.38 -0.02 1.24 16 37 H 0.04 1.01 7.40 -2.39 -0.02 0.99 16 38 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 41 H 0.37 22.04 7.53 -92.70 -0.70 21.34 16 42 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.09 2.27 7.36 -2.39 -0.02 2.25 16 44 H 0.11 2.17 8.11 -2.39 -0.02 2.15 16 45 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 46 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -87.22 378.92 2.87 -84.35 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.30 Total: 22.42 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 7.17 Total: 17.74 kcal Atomic # 7 Polarization: -119.08 SS G_CDS: -5.39 Total: -124.47 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -1.24 Total: -49.53 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -87.22 2.87 -84.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200872770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.294 kcal (2) G-P(sol) polarization free energy of solvation -87.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds