Wall clock time and date at job start Tue Mar 31 2020 19:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35689 * 116.99848 * 2 1 4 4 C 1.38893 * 119.62555 * 179.73041 * 3 2 1 5 5 C 1.39571 * 118.94776 * 179.73576 * 4 3 2 6 6 C 1.48167 * 120.89232 * 180.23533 * 5 4 3 7 7 O 1.21516 * 119.99896 * 313.99869 * 6 5 4 8 8 N 1.34771 * 120.00114 * 133.99957 * 6 5 4 9 9 C 1.47504 * 118.75686 * 3.14146 * 8 6 5 10 10 C 1.53210 * 111.23613 * 221.51040 * 9 8 6 11 11 C 1.51532 * 109.43127 * 40.26868 * 10 9 8 12 12 O 1.42153 * 108.76559 * 268.50440 * 11 10 9 13 13 C 1.38011 * 119.43925 * 87.21238 * 12 11 10 14 14 H 1.09000 * 109.46732 * 56.57740 * 13 12 11 15 15 C 1.53004 * 109.47193 * 176.56916 * 13 12 11 16 16 N 1.46498 * 109.46849 * 300.01869 * 15 13 12 17 17 C 1.36934 * 119.99493 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00465 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00068 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00353 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99757 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46847 * 90.00404 * 21 19 17 23 23 H 1.48503 * 109.47007 * 210.00132 * 21 19 17 24 24 H 1.48498 * 109.47081 * 330.00010 * 21 19 17 25 25 C 1.45125 * 118.75580 * 183.41506 * 8 6 5 26 26 C 1.39961 * 118.21832 * 0.52155 * 5 4 3 27 27 C 1.37980 * 119.13332 * 359.73359 * 26 5 4 28 28 N 1.31910 * 120.97597 * 0.02562 * 27 26 5 29 29 H 1.08998 * 109.47152 * 300.00357 * 1 2 3 30 30 H 1.09000 * 109.47106 * 60.00271 * 1 2 3 31 31 H 1.08997 * 109.46869 * 180.02562 * 1 2 3 32 32 H 1.08006 * 120.52426 * 359.97438 * 4 3 2 33 33 H 1.09000 * 109.16954 * 342.02965 * 9 8 6 34 34 H 1.09004 * 109.16236 * 101.23487 * 9 8 6 35 35 H 1.08998 * 109.60898 * 280.22949 * 10 9 8 36 36 H 1.09005 * 109.44151 * 160.20996 * 10 9 8 37 37 H 1.09003 * 109.58760 * 148.72006 * 11 10 9 38 38 H 1.08998 * 109.58916 * 28.28482 * 11 10 9 39 39 H 1.08995 * 109.46436 * 60.01473 * 15 13 12 40 40 H 1.08996 * 109.46961 * 180.02562 * 15 13 12 41 41 H 0.96992 * 120.00641 * 359.97438 * 16 15 13 42 42 H 0.97005 * 119.99998 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.45983 * 210.72442 * 25 8 6 44 44 H 1.08999 * 109.45834 * 330.69701 * 25 8 6 45 45 H 1.08004 * 120.43835 * 179.76202 * 26 5 4 46 46 H 1.07997 * 119.51474 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4324 1.2727 0.0057 5 6 4.0513 2.5237 0.0000 6 6 5.5283 2.6417 0.0005 7 8 6.1916 1.9652 0.7613 8 7 6.1360 3.4995 -0.8429 9 6 5.3019 4.3578 -1.7050 10 6 5.8784 4.4490 -3.1216 11 6 6.3904 3.0874 -3.5461 12 8 7.7639 2.9852 -3.1940 13 6 8.1099 2.5412 -1.9339 14 1 7.6668 1.5606 -1.7599 15 6 9.6329 2.4383 -1.8298 16 7 10.1283 1.4936 -2.8339 17 6 11.4701 1.2384 -2.9305 18 1 12.1633 1.7337 -2.2668 19 6 11.9396 0.3429 -3.8816 20 7 13.2294 0.0979 -3.9749 21 14 10.7407 -0.5145 -5.0293 22 1 10.5554 0.3051 -6.2537 23 1 11.2796 -1.8470 -5.4025 24 1 9.4341 -0.6832 -4.3440 25 6 7.5864 3.5394 -0.8728 26 6 3.2394 3.6637 -0.0001 27 6 1.8680 3.5116 -0.0001 28 7 1.3178 2.3128 0.0004 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 4.0230 0.3684 0.0105 33 1 4.2946 3.9441 -1.7547 34 1 5.2560 5.3589 -1.2761 35 1 6.6989 5.1664 -3.1371 36 1 5.0988 4.7747 -3.8103 37 1 6.2803 2.9757 -4.6247 38 1 5.8235 2.3086 -3.0361 39 1 10.0759 3.4189 -2.0036 40 1 9.9061 2.0872 -0.8347 41 1 9.5059 1.0490 -3.4303 42 1 13.5574 -0.5282 -4.6393 43 1 7.9168 4.5465 -1.1274 44 1 7.9774 3.2658 0.1071 45 1 3.6804 4.6496 -0.0005 46 1 1.2356 4.3871 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200874613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:22 Heat of formation + Delta-G solvation = -39.045395 kcal Electronic energy + Delta-G solvation = -29508.542892 eV Core-core repulsion = 25400.396023 eV Total energy + Delta-G solvation = -4108.146869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50171 -40.43937 -38.80851 -38.04206 -35.94137 -34.79778 -33.29341 -32.82934 -31.30902 -31.17075 -29.26579 -27.76715 -27.01191 -25.84074 -24.21157 -23.81241 -22.31008 -21.76930 -21.07098 -20.13813 -18.60673 -17.79974 -17.62767 -16.89752 -16.71056 -16.54802 -16.45741 -16.30072 -15.87644 -15.08235 -15.01544 -14.50697 -14.41629 -14.31649 -14.06536 -13.75372 -13.63861 -13.44749 -12.93489 -12.79682 -12.61539 -12.48329 -12.24581 -12.11469 -11.93949 -11.68761 -11.47581 -11.23598 -10.97552 -10.81066 -10.65745 -10.37139 -10.32313 -10.08143 -9.90139 -9.58666 -9.52809 -8.99287 -8.84343 -8.77248 -7.15318 -5.69991 -3.04405 0.37378 0.64835 2.22219 2.53595 2.77450 3.27109 3.44795 3.49210 3.51146 3.75741 3.78588 3.92488 4.37404 4.46903 4.52966 4.56934 4.65319 4.67103 4.80021 4.85382 4.91171 5.00888 5.09466 5.18622 5.20193 5.21624 5.29077 5.30970 5.35542 5.45019 5.57432 5.59963 5.67008 5.75563 5.79842 5.83522 5.93106 5.98104 6.28222 6.55754 6.66631 6.74613 6.92031 7.31032 7.75846 7.81130 8.06001 8.49033 9.28842 10.01354 10.22120 11.48465 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.002889 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.384557 B = 9688.042064 C =10375.825927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.304 6.304 3 C 0.324 3.676 4 C -0.140 4.140 5 C -0.043 4.043 6 C 0.552 3.448 7 O -0.513 6.513 8 N -0.598 5.598 9 C 0.095 3.905 10 C -0.167 4.167 11 C 0.071 3.929 12 O -0.370 6.370 13 C 0.084 3.916 14 H 0.051 0.949 15 C 0.171 3.829 16 N -0.750 5.750 17 C -0.241 4.241 18 H 0.091 0.909 19 C 0.004 3.996 20 N -0.936 5.936 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.278 1.278 25 C 0.080 3.920 26 C -0.187 4.187 27 C 0.139 3.861 28 N -0.530 5.530 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.151 0.849 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.036 0.964 40 H 0.044 0.956 41 H 0.364 0.636 42 H 0.259 0.741 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.147 0.853 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.734 10.657 6.882 32.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.210 6.210 3 C 0.145 3.855 4 C -0.162 4.162 5 C -0.054 4.054 6 C 0.338 3.662 7 O -0.388 6.388 8 N -0.331 5.331 9 C -0.027 4.027 10 C -0.205 4.205 11 C -0.006 4.006 12 O -0.288 6.288 13 C 0.024 3.976 14 H 0.069 0.931 15 C 0.043 3.957 16 N -0.395 5.395 17 C -0.371 4.371 18 H 0.108 0.892 19 C -0.192 4.192 20 N -0.584 5.584 21 Si 0.717 3.283 22 H -0.210 1.210 23 H -0.219 1.219 24 H -0.205 1.205 25 C -0.043 4.043 26 C -0.208 4.208 27 C -0.016 4.016 28 N -0.254 5.254 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.169 0.831 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.197 0.803 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.117 0.883 45 H 0.164 0.836 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -29.768 10.011 7.215 32.224 hybrid contribution -0.475 -0.447 -0.700 0.957 sum -30.243 9.564 6.515 32.381 Atomic orbital electron populations 1.22905 0.76819 1.03263 1.02521 1.86285 1.23201 1.24048 1.87510 1.19651 0.88895 0.84916 0.92081 1.21082 0.92170 0.98748 1.04155 1.20088 0.93964 0.93520 0.97790 1.18308 0.86681 0.80121 0.81067 1.90859 1.65410 1.43390 1.39181 1.47827 1.07202 1.39073 1.38985 1.22317 0.94816 0.94633 0.90912 1.22452 1.02387 1.00278 0.95421 1.22154 0.82984 0.95088 1.00366 1.86430 1.23829 1.86189 1.32344 1.22356 0.97608 0.95234 0.82438 0.93110 1.20594 0.87100 0.94396 0.93592 1.42542 1.05490 1.51124 1.40364 1.19057 0.82177 1.20636 1.15188 0.89168 1.24644 0.95574 0.99750 0.99223 1.69706 1.11585 1.39260 1.37843 0.86506 0.80901 0.79267 0.81636 1.21049 1.21854 1.20462 1.22503 0.77880 1.01646 1.02287 1.22248 0.94804 0.99135 1.04613 1.22377 0.92380 0.93702 0.93141 1.67205 1.41177 0.98894 1.18133 0.92158 0.92129 0.88376 0.83120 0.89173 0.90926 0.89604 0.89486 0.89169 0.93569 0.94599 0.93843 0.80260 0.93132 0.89169 0.88253 0.83572 0.81584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.38 101.05 1.05 1.32 16 2 O -0.30 -3.09 10.47 -18.77 -0.20 -3.28 16 3 C 0.32 3.40 7.49 -17.16 -0.13 3.27 16 4 C -0.14 -1.56 9.75 -38.84 -0.38 -1.94 16 5 C -0.04 -0.45 4.99 -104.68 -0.52 -0.97 16 6 C 0.55 7.11 7.28 -12.18 -0.09 7.02 16 7 O -0.51 -8.65 16.42 5.35 0.09 -8.56 16 8 N -0.60 -6.68 2.20 -173.69 -0.38 -7.07 16 9 C 0.10 0.72 4.69 -3.38 -0.02 0.71 16 10 C -0.17 -1.39 5.78 -27.37 -0.16 -1.55 16 11 C 0.07 0.85 6.37 36.42 0.23 1.08 16 12 O -0.37 -6.04 9.18 -26.52 -0.24 -6.28 16 13 C 0.08 1.39 2.73 -25.78 -0.07 1.32 16 14 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 15 C 0.17 3.45 5.95 -4.04 -0.02 3.43 16 16 N -0.75 -18.90 5.29 -59.91 -0.32 -19.21 16 17 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16 18 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 19 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 20 N -0.94 -30.17 13.97 55.49 0.78 -29.40 16 21 Si 0.89 23.15 27.73 -169.99 -4.71 18.43 16 22 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 24 H -0.28 -6.96 6.52 56.52 0.37 -6.59 16 25 C 0.08 1.04 4.89 -3.83 -0.02 1.02 16 26 C -0.19 -1.35 7.46 -39.03 -0.29 -1.64 16 27 C 0.14 0.94 11.17 -17.61 -0.20 0.74 16 28 N -0.53 -4.87 9.18 -13.38 -0.12 -4.99 16 29 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 30 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.15 1.75 8.06 -52.48 -0.42 1.32 16 33 H 0.09 0.59 4.84 -51.93 -0.25 0.34 16 34 H 0.07 0.40 7.85 -51.93 -0.41 -0.01 16 35 H 0.09 0.79 8.01 -51.93 -0.42 0.37 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.56 7.39 -51.93 -0.38 0.18 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.36 9.18 5.39 -40.82 -0.22 8.96 16 42 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 43 H 0.09 1.03 8.12 -51.93 -0.42 0.61 16 44 H 0.10 1.38 7.23 -51.93 -0.38 1.01 16 45 H 0.15 0.70 6.57 -52.48 -0.34 0.36 16 46 H 0.17 0.55 8.06 -52.49 -0.42 0.12 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -36.84 373.05 -6.99 -43.84 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.64 Total: 4.32 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -0.87 Total: 6.58 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.05 Total: -60.67 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.35 Total: -18.13 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.71 Total: 18.43 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.84 -6.99 -43.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200874613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.792 kcal (2) G-P(sol) polarization free energy of solvation -36.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds