Wall clock time and date at job start Tue Mar 31 2020 19:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35689 * 116.99848 * 2 1 4 4 C 1.38893 * 119.62555 * 179.73041 * 3 2 1 5 5 C 1.39571 * 118.94776 * 179.73576 * 4 3 2 6 6 C 1.48167 * 120.89232 * 180.23533 * 5 4 3 7 7 O 1.21516 * 119.99896 * 313.99869 * 6 5 4 8 8 N 1.34771 * 120.00114 * 133.99957 * 6 5 4 9 9 C 1.47504 * 118.75686 * 3.14146 * 8 6 5 10 10 C 1.53210 * 111.23613 * 221.51040 * 9 8 6 11 11 C 1.51532 * 109.43127 * 40.26868 * 10 9 8 12 12 O 1.42153 * 108.76559 * 268.50440 * 11 10 9 13 13 C 1.38011 * 119.43925 * 87.21238 * 12 11 10 14 14 H 1.09000 * 109.46732 * 56.57740 * 13 12 11 15 15 C 1.53004 * 109.47193 * 176.56916 * 13 12 11 16 16 N 1.46498 * 109.46849 * 300.01869 * 15 13 12 17 17 C 1.36934 * 119.99493 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00465 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00068 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00353 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99757 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46847 * 90.00404 * 21 19 17 23 23 H 1.48503 * 109.47007 * 210.00132 * 21 19 17 24 24 H 1.48498 * 109.47081 * 330.00010 * 21 19 17 25 25 C 1.45125 * 118.75580 * 183.41506 * 8 6 5 26 26 C 1.39961 * 118.21832 * 0.52155 * 5 4 3 27 27 C 1.37980 * 119.13332 * 359.73359 * 26 5 4 28 28 N 1.31910 * 120.97597 * 0.02562 * 27 26 5 29 29 H 1.08998 * 109.47152 * 300.00357 * 1 2 3 30 30 H 1.09000 * 109.47106 * 60.00271 * 1 2 3 31 31 H 1.08997 * 109.46869 * 180.02562 * 1 2 3 32 32 H 1.08006 * 120.52426 * 359.97438 * 4 3 2 33 33 H 1.09000 * 109.16954 * 342.02965 * 9 8 6 34 34 H 1.09004 * 109.16236 * 101.23487 * 9 8 6 35 35 H 1.08998 * 109.60898 * 280.22949 * 10 9 8 36 36 H 1.09005 * 109.44151 * 160.20996 * 10 9 8 37 37 H 1.09003 * 109.58760 * 148.72006 * 11 10 9 38 38 H 1.08998 * 109.58916 * 28.28482 * 11 10 9 39 39 H 1.08995 * 109.46436 * 60.01473 * 15 13 12 40 40 H 1.08996 * 109.46961 * 180.02562 * 15 13 12 41 41 H 0.96992 * 120.00641 * 359.97438 * 16 15 13 42 42 H 0.97005 * 119.99998 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.45983 * 210.72442 * 25 8 6 44 44 H 1.08999 * 109.45834 * 330.69701 * 25 8 6 45 45 H 1.08004 * 120.43835 * 179.76202 * 26 5 4 46 46 H 1.07997 * 119.51474 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4324 1.2727 0.0057 5 6 4.0513 2.5237 0.0000 6 6 5.5283 2.6417 0.0005 7 8 6.1916 1.9652 0.7613 8 7 6.1360 3.4995 -0.8429 9 6 5.3019 4.3578 -1.7050 10 6 5.8784 4.4490 -3.1216 11 6 6.3904 3.0874 -3.5461 12 8 7.7639 2.9852 -3.1940 13 6 8.1099 2.5412 -1.9339 14 1 7.6668 1.5606 -1.7599 15 6 9.6329 2.4383 -1.8298 16 7 10.1283 1.4936 -2.8339 17 6 11.4701 1.2384 -2.9305 18 1 12.1633 1.7337 -2.2668 19 6 11.9396 0.3429 -3.8816 20 7 13.2294 0.0979 -3.9749 21 14 10.7407 -0.5145 -5.0293 22 1 10.5554 0.3051 -6.2537 23 1 11.2796 -1.8470 -5.4025 24 1 9.4341 -0.6832 -4.3440 25 6 7.5864 3.5394 -0.8728 26 6 3.2394 3.6637 -0.0001 27 6 1.8680 3.5116 -0.0001 28 7 1.3178 2.3128 0.0004 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 4.0230 0.3684 0.0105 33 1 4.2946 3.9441 -1.7547 34 1 5.2560 5.3589 -1.2761 35 1 6.6989 5.1664 -3.1371 36 1 5.0988 4.7747 -3.8103 37 1 6.2803 2.9757 -4.6247 38 1 5.8235 2.3086 -3.0361 39 1 10.0759 3.4189 -2.0036 40 1 9.9061 2.0872 -0.8347 41 1 9.5059 1.0490 -3.4303 42 1 13.5574 -0.5282 -4.6393 43 1 7.9168 4.5465 -1.1274 44 1 7.9774 3.2658 0.1071 45 1 3.6804 4.6496 -0.0005 46 1 1.2356 4.3871 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200874613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:21 Heat of formation + Delta-G solvation = -67.671030 kcal Electronic energy + Delta-G solvation = -29509.784193 eV Core-core repulsion = 25400.396023 eV Total energy + Delta-G solvation = -4109.388170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.30688 -41.29745 -39.86431 -38.78779 -37.12685 -36.41006 -34.47926 -33.82003 -33.03011 -31.95573 -30.58140 -28.36723 -28.09958 -26.96407 -25.42361 -24.49525 -23.85000 -22.84107 -22.38555 -20.94442 -19.82518 -19.41062 -18.48880 -17.93308 -17.67483 -17.50735 -17.19085 -17.01915 -16.89210 -16.48524 -16.09982 -15.94105 -15.30889 -15.19258 -15.07121 -14.86389 -14.79919 -14.50285 -14.42690 -14.03955 -13.81926 -13.62640 -13.38654 -13.18460 -12.86775 -12.70035 -12.68533 -12.44282 -12.30737 -12.11976 -12.02413 -11.85039 -11.59113 -11.48753 -11.05735 -11.03923 -10.69089 -10.63424 -9.81425 -9.60907 -9.33164 -8.05032 -5.37918 -0.36329 0.01401 1.31550 1.34527 1.37719 1.45068 1.70300 2.09385 2.45975 2.60336 2.63392 3.06273 3.26484 3.29161 3.43630 3.73916 3.81098 3.88699 3.89956 3.97861 3.99442 4.08120 4.21653 4.25096 4.37610 4.40775 4.42638 4.44458 4.55338 4.63363 4.66675 4.69981 4.74366 4.80041 4.84620 4.92494 5.03876 5.08607 5.14166 5.23511 5.40280 5.71701 6.03469 6.12316 6.18640 6.64763 6.67753 6.81978 7.04511 7.80436 8.00224 9.16413 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.002889 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.384557 B = 9688.042064 C =10375.825927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.325 6.325 3 C 0.313 3.687 4 C -0.166 4.166 5 C -0.052 4.052 6 C 0.549 3.451 7 O -0.567 6.567 8 N -0.592 5.592 9 C 0.089 3.911 10 C -0.158 4.158 11 C 0.060 3.940 12 O -0.395 6.395 13 C 0.099 3.901 14 H 0.025 0.975 15 C 0.165 3.835 16 N -0.754 5.754 17 C -0.234 4.234 18 H 0.061 0.939 19 C -0.062 4.062 20 N -0.981 5.981 21 Si 0.956 3.044 22 H -0.274 1.274 23 H -0.292 1.292 24 H -0.264 1.264 25 C 0.091 3.909 26 C -0.170 4.170 27 C 0.150 3.850 28 N -0.535 5.535 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.038 0.962 39 H 0.042 0.958 40 H 0.040 0.960 41 H 0.365 0.635 42 H 0.259 0.741 43 H 0.114 0.886 44 H 0.086 0.914 45 H 0.180 0.820 46 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.628 13.375 6.090 36.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.232 6.232 3 C 0.135 3.865 4 C -0.188 4.188 5 C -0.063 4.063 6 C 0.337 3.663 7 O -0.446 6.446 8 N -0.323 5.323 9 C -0.031 4.031 10 C -0.196 4.196 11 C -0.016 4.016 12 O -0.314 6.314 13 C 0.039 3.961 14 H 0.043 0.957 15 C 0.038 3.962 16 N -0.400 5.400 17 C -0.365 4.365 18 H 0.079 0.921 19 C -0.254 4.254 20 N -0.632 5.632 21 Si 0.784 3.216 22 H -0.200 1.200 23 H -0.218 1.218 24 H -0.190 1.190 25 C -0.033 4.033 26 C -0.190 4.190 27 C -0.006 4.006 28 N -0.259 5.259 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.147 0.853 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.140 0.860 37 H 0.117 0.883 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.198 0.802 42 H 0.068 0.932 43 H 0.133 0.867 44 H 0.104 0.896 45 H 0.198 0.802 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -33.729 12.772 6.418 36.633 hybrid contribution 0.699 -1.200 -0.427 1.453 sum -33.030 11.573 5.991 35.507 Atomic orbital electron populations 1.23112 0.75180 1.04740 1.02749 1.86254 1.24946 1.24450 1.87577 1.19651 0.88632 0.85523 0.92718 1.20995 0.92744 0.98624 1.06413 1.19948 0.92570 0.94491 0.99303 1.18752 0.87721 0.79362 0.80471 1.90828 1.66766 1.45456 1.41542 1.47908 1.06568 1.38967 1.38862 1.22696 0.94568 0.95776 0.90077 1.22398 1.03226 0.97480 0.96462 1.22468 0.80782 0.97374 1.00946 1.86356 1.26801 1.86236 1.31971 1.21953 0.94724 0.95289 0.84140 0.95740 1.20750 0.90108 0.93285 0.92010 1.42571 1.03880 1.52087 1.41433 1.19070 0.83697 1.19696 1.14061 0.92073 1.25458 0.97414 1.01069 1.01416 1.69873 1.13753 1.40491 1.39091 0.85389 0.78932 0.77841 0.79462 1.20037 1.21810 1.18954 1.22235 0.79331 1.01554 1.00182 1.22586 0.94696 0.99205 1.02520 1.23168 0.92760 0.94033 0.90624 1.67314 1.41176 0.99322 1.18096 0.91939 0.91750 0.86413 0.85346 0.87685 0.87203 0.89893 0.86025 0.88262 0.94381 0.93983 0.94192 0.80183 0.93225 0.86747 0.89594 0.80230 0.77153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.38 113.37 1.18 1.63 16 2 O -0.33 -6.62 10.47 -90.07 -0.94 -7.56 16 3 C 0.31 6.40 7.49 84.80 0.63 7.03 16 4 C -0.17 -3.78 9.75 22.75 0.22 -3.56 16 5 C -0.05 -1.02 4.99 -19.90 -0.10 -1.12 16 6 C 0.55 13.91 7.28 86.88 0.63 14.54 16 7 O -0.57 -19.97 16.42 -3.76 -0.06 -20.03 16 8 N -0.59 -12.08 2.20 -821.71 -1.81 -13.89 16 9 C 0.09 0.95 4.69 86.26 0.40 1.36 16 10 C -0.16 -1.97 5.78 30.18 0.17 -1.79 16 11 C 0.06 1.31 6.37 71.50 0.46 1.76 16 12 O -0.39 -12.48 9.18 -117.81 -1.08 -13.56 16 13 C 0.10 3.30 2.73 31.21 0.09 3.39 16 14 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 15 C 0.17 6.79 5.95 86.38 0.51 7.31 16 16 N -0.75 -38.57 5.29 -343.46 -1.82 -40.38 16 17 C -0.23 -14.16 10.47 84.03 0.88 -13.28 16 18 H 0.06 3.97 8.06 -2.91 -0.02 3.95 16 19 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 20 N -0.98 -64.97 13.97 21.65 0.30 -64.67 16 21 Si 0.96 48.44 27.73 68.60 1.90 50.34 16 22 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 24 H -0.26 -12.61 6.52 99.48 0.65 -11.96 16 25 C 0.09 2.29 4.89 87.25 0.43 2.72 16 26 C -0.17 -1.75 7.46 22.63 0.17 -1.58 16 27 C 0.15 1.36 11.17 84.62 0.94 2.30 16 28 N -0.53 -8.46 9.18 -309.13 -2.84 -11.30 16 29 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 30 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 31 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.13 3.35 8.06 -2.91 -0.02 3.32 16 33 H 0.11 0.86 4.84 -2.39 -0.01 0.85 16 34 H 0.11 0.49 7.85 -2.38 -0.02 0.47 16 35 H 0.08 1.16 8.01 -2.39 -0.02 1.14 16 36 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.04 0.88 7.39 -2.39 -0.02 0.87 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.37 18.38 5.39 -92.71 -0.50 17.88 16 42 H 0.26 16.24 8.31 -92.70 -0.77 15.47 16 43 H 0.11 2.33 8.12 -2.38 -0.02 2.31 16 44 H 0.09 2.42 7.23 -2.39 -0.02 2.41 16 45 H 0.18 0.62 6.57 -2.91 -0.02 0.61 16 46 H 0.21 0.02 8.06 -2.91 -0.02 0.00 16 Total: -1.00 -85.06 373.05 1.19 -83.87 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.44 Total: 19.85 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 7.09 Total: 17.33 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -6.16 Total: -130.24 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -2.09 Total: -41.15 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 1.90 Total: 50.34 kcal Total: -85.06 1.19 -83.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200874613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.204 kcal (2) G-P(sol) polarization free energy of solvation -85.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds