Wall clock time and date at job start Tue Mar 31 2020 19:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35502 * 116.99644 * 2 1 4 4 C 1.39167 * 119.52303 * 179.97438 * 3 2 1 5 5 C 1.37963 * 119.26159 * 180.02562 * 4 3 2 6 6 C 1.40284 * 118.35628 * 0.02562 * 5 4 3 7 7 C 1.47618 * 120.49671 * 179.97438 * 6 5 4 8 8 O 1.21580 * 120.00025 * 53.35674 * 7 6 5 9 9 N 1.34774 * 119.99626 * 233.35774 * 7 6 5 10 10 C 1.47513 * 118.75142 * 170.40917 * 9 7 6 11 11 C 1.53568 * 111.03026 * 138.39336 * 10 9 7 12 12 C 1.51540 * 109.57758 * 320.01515 * 11 10 9 13 13 O 1.42159 * 108.74901 * 91.40232 * 12 11 10 14 14 C 1.38010 * 119.44341 * 272.77042 * 13 12 11 15 15 H 1.09007 * 109.46573 * 303.42682 * 14 13 12 16 16 C 1.52996 * 109.47154 * 183.43543 * 14 13 12 17 17 N 1.46497 * 109.47453 * 64.98537 * 16 14 13 18 18 C 1.36939 * 120.00244 * 179.72701 * 17 16 14 19 19 H 1.07997 * 120.00112 * 0.27575 * 18 17 16 20 20 C 1.38810 * 120.00237 * 180.27814 * 18 17 16 21 21 N 1.31629 * 119.99808 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00258 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47137 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47323 * 120.00087 * 22 20 18 25 25 H 1.48499 * 109.47392 * 240.00016 * 22 20 18 26 26 C 1.45118 * 118.76180 * 350.42731 * 9 7 6 27 27 C 1.39518 * 119.00221 * 0.25564 * 6 5 4 28 28 N 1.31664 * 120.63192 * 359.46842 * 27 6 5 29 29 H 1.09008 * 109.47080 * 60.00605 * 1 2 3 30 30 H 1.08999 * 109.46719 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47878 * 300.00508 * 1 2 3 32 32 H 1.07992 * 120.37215 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.81940 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.16444 * 258.79067 * 10 9 7 35 35 H 1.08997 * 109.17130 * 17.98912 * 10 9 7 36 36 H 1.08994 * 109.45482 * 80.05430 * 11 10 9 37 37 H 1.09002 * 109.45087 * 199.98886 * 11 10 9 38 38 H 1.08997 * 109.59145 * 211.18333 * 12 11 10 39 39 H 1.09001 * 109.59259 * 331.62353 * 12 11 10 40 40 H 1.09004 * 109.47047 * 304.98841 * 16 14 13 41 41 H 1.09001 * 109.47330 * 184.99284 * 16 14 13 42 42 H 0.97005 * 120.00016 * 0.02562 * 17 16 14 43 43 H 0.96996 * 119.99738 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.45956 * 149.23945 * 26 9 7 45 45 H 1.08994 * 109.44864 * 29.27673 * 26 9 7 46 46 H 1.08004 * 119.68361 * 179.74622 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4344 1.2687 0.0005 5 6 4.0550 2.5009 0.0011 6 6 3.2522 3.6513 0.0016 7 6 3.8666 4.9935 0.0028 8 8 4.6913 5.2853 -0.8416 9 7 3.5133 5.8955 0.9398 10 6 4.2902 7.1445 1.0511 11 6 3.3660 8.3503 1.2747 12 6 2.1270 8.2070 0.4140 13 8 1.1246 7.5340 1.1646 14 6 1.0867 6.1545 1.1620 15 1 1.0056 5.7952 0.1360 16 6 -0.1233 5.6760 1.9668 17 7 -1.3547 6.0992 1.2955 18 6 -2.5727 5.7777 1.8326 19 1 -2.6254 5.2160 2.7536 20 6 -3.7395 6.1736 1.1935 21 7 -3.6753 6.8585 0.0713 22 14 -5.4008 5.7357 1.9265 23 1 -5.2011 4.9684 3.1822 24 1 -6.1556 6.9802 2.2211 25 1 -6.1667 4.9096 0.9589 26 6 2.3833 5.6011 1.8014 27 6 1.8645 3.5077 0.0070 28 7 1.3137 2.3118 0.0011 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8898 32 1 4.0210 0.3620 0.0005 33 1 5.1323 2.5778 0.0011 34 1 4.9810 7.0626 1.8903 35 1 4.8593 7.2950 0.1337 36 1 3.0757 8.3956 2.3243 37 1 3.8920 9.2659 1.0040 38 1 1.7664 9.1941 0.1252 39 1 2.3665 7.6277 -0.4778 40 1 -0.0881 6.1078 2.9671 41 1 -0.1044 4.5886 2.0397 42 1 -1.3074 6.6034 0.4681 43 1 -4.4906 7.1349 -0.3756 44 1 2.5367 6.0686 2.7740 45 1 2.2943 4.5221 1.9272 46 1 1.2359 4.3860 0.0116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200919945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:26 Heat of formation + Delta-G solvation = -38.731558 kcal Electronic energy + Delta-G solvation = -30265.626348 eV Core-core repulsion = 26157.493087 eV Total energy + Delta-G solvation = -4108.133260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.34370 -40.19728 -38.67056 -37.79455 -35.44625 -34.91007 -33.29594 -32.76465 -31.23627 -30.72231 -28.89993 -27.60552 -26.64824 -25.28186 -24.15185 -23.54844 -22.70568 -21.55768 -21.12457 -19.62256 -18.61273 -17.85709 -17.41405 -17.24323 -16.66328 -16.57437 -16.11882 -15.68085 -15.29156 -14.84908 -14.57876 -14.43700 -14.32011 -13.99667 -13.64188 -13.47271 -13.40615 -13.19834 -13.08558 -12.68497 -12.59284 -12.37605 -12.15344 -11.95199 -11.91080 -11.38413 -11.24048 -10.98043 -10.82264 -10.78829 -10.35384 -10.32629 -10.15663 -10.01784 -9.72445 -9.64986 -9.41850 -8.87596 -8.69014 -8.65638 -6.89735 -5.72828 -3.01612 0.69261 1.01387 2.45963 2.74333 2.92402 3.45232 3.50517 3.53010 3.55062 3.83685 4.10341 4.24838 4.57406 4.60871 4.69889 4.78509 4.84382 4.87130 4.92313 5.05268 5.12687 5.21512 5.23186 5.32071 5.39576 5.45815 5.51632 5.59204 5.61574 5.64086 5.67394 5.72010 5.77079 5.88380 5.97168 6.06609 6.12263 6.23453 6.33933 6.52026 6.66861 7.00554 7.11484 7.64429 7.72119 7.86778 7.93063 8.44758 9.56868 10.12853 10.48447 11.49947 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008299 B = 0.004808 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3373.155145 B = 5822.812820 C = 8753.738733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.306 6.306 3 C 0.337 3.663 4 C -0.198 4.198 5 C 0.005 3.995 6 C -0.229 4.229 7 C 0.569 3.431 8 O -0.534 6.534 9 N -0.603 5.603 10 C 0.110 3.890 11 C -0.165 4.165 12 C 0.071 3.929 13 O -0.363 6.363 14 C 0.080 3.920 15 H 0.053 0.947 16 C 0.163 3.837 17 N -0.724 5.724 18 C -0.237 4.237 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.065 3.935 27 C 0.168 3.832 28 N -0.527 5.527 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.031 0.969 41 H 0.036 0.964 42 H 0.387 0.613 43 H 0.254 0.746 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.071 -6.992 1.992 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.212 6.212 3 C 0.158 3.842 4 C -0.218 4.218 5 C -0.020 4.020 6 C -0.234 4.234 7 C 0.357 3.643 8 O -0.411 6.411 9 N -0.336 5.336 10 C -0.011 4.011 11 C -0.204 4.204 12 C -0.006 4.006 13 O -0.281 6.281 14 C 0.020 3.980 15 H 0.071 0.929 16 C 0.034 3.966 17 N -0.369 5.369 18 C -0.368 4.368 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.059 4.059 27 C 0.011 3.989 28 N -0.249 5.249 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.221 0.779 43 H 0.064 0.936 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 17.459 -7.163 1.782 18.955 hybrid contribution -0.136 -0.020 -0.021 0.139 sum 17.323 -7.183 1.761 18.836 Atomic orbital electron populations 1.22980 0.76299 1.03140 1.03503 1.86182 1.23691 1.24415 1.86953 1.20173 0.89432 0.85086 0.89480 1.20960 0.91950 0.99320 1.09595 1.21298 1.00384 0.89787 0.90566 1.20694 0.95572 0.94502 1.12674 1.18142 0.81468 0.84036 0.80634 1.90772 1.34663 1.79167 1.36548 1.47822 1.31814 1.18972 1.34959 1.21873 0.93472 0.82516 1.03251 1.22495 0.97382 0.97753 1.02721 1.22187 0.87572 0.97532 0.93281 1.86466 1.52837 1.18519 1.70236 1.22611 0.94446 0.82300 0.98682 0.92936 1.20662 0.84531 0.96423 0.94950 1.42200 0.99660 1.66475 1.28517 1.19227 0.83637 1.28659 1.05273 0.91144 1.24720 0.97668 1.00927 0.97503 1.69684 1.26930 1.42960 1.18363 0.86139 0.84569 0.77490 0.78108 1.20579 1.21913 1.21937 1.22759 0.85763 1.02408 0.95019 1.23582 0.91541 0.95062 0.88714 1.67507 1.40056 0.98389 1.18976 0.91731 0.88490 0.91505 0.83489 0.83602 0.91498 0.88877 0.90009 0.89587 0.88981 0.93175 0.95118 0.94647 0.77900 0.93613 0.88856 0.89203 0.80399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.37 101.05 1.05 1.44 16 2 O -0.31 -3.79 10.46 -18.20 -0.19 -3.98 16 3 C 0.34 4.45 7.49 -16.96 -0.13 4.32 16 4 C -0.20 -2.14 10.02 -39.34 -0.39 -2.54 16 5 C 0.01 0.06 9.90 -38.91 -0.39 -0.33 16 6 C -0.23 -3.02 4.83 -104.82 -0.51 -3.52 16 7 C 0.57 7.95 7.15 -12.43 -0.09 7.86 16 8 O -0.53 -8.77 16.38 5.30 0.09 -8.68 16 9 N -0.60 -7.45 2.19 -173.68 -0.38 -7.83 16 10 C 0.11 1.16 6.20 -3.19 -0.02 1.14 16 11 C -0.17 -1.68 5.79 -27.18 -0.16 -1.83 16 12 C 0.07 0.94 6.38 36.42 0.23 1.17 16 13 O -0.36 -6.08 9.38 -26.52 -0.25 -6.33 16 14 C 0.08 1.27 1.73 -25.78 -0.04 1.22 16 15 H 0.05 0.90 5.65 -51.93 -0.29 0.60 16 16 C 0.16 3.15 5.84 -4.05 -0.02 3.12 16 17 N -0.72 -18.16 5.54 -59.91 -0.33 -18.49 16 18 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 22 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 C 0.06 0.81 4.41 -3.83 -0.02 0.80 16 27 C 0.17 2.43 8.74 -17.15 -0.15 2.28 16 28 N -0.53 -7.88 9.18 -12.96 -0.12 -8.00 16 29 H 0.06 0.75 8.10 -51.92 -0.42 0.33 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 1.05 6.93 -51.93 -0.36 0.69 16 36 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.70 7.40 -51.93 -0.38 0.31 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.39 10.43 7.65 -40.82 -0.31 10.12 16 43 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 45 H 0.09 1.09 5.48 -51.93 -0.28 0.81 16 46 H 0.18 2.76 3.53 -52.48 -0.19 2.58 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -33.64 371.49 -7.19 -40.83 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.43 Total: 9.08 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -0.88 Total: 7.98 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.11 Total: -61.82 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.35 Total: -18.99 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.64 -7.19 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200919945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.096 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds