Wall clock time and date at job start Tue Mar 31 2020 19:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35502 * 116.99644 * 2 1 4 4 C 1.39167 * 119.52303 * 179.97438 * 3 2 1 5 5 C 1.37963 * 119.26159 * 180.02562 * 4 3 2 6 6 C 1.40284 * 118.35628 * 0.02562 * 5 4 3 7 7 C 1.47618 * 120.49671 * 179.97438 * 6 5 4 8 8 O 1.21580 * 120.00025 * 53.35674 * 7 6 5 9 9 N 1.34774 * 119.99626 * 233.35774 * 7 6 5 10 10 C 1.47513 * 118.75142 * 170.40917 * 9 7 6 11 11 C 1.53568 * 111.03026 * 138.39336 * 10 9 7 12 12 C 1.51540 * 109.57758 * 320.01515 * 11 10 9 13 13 O 1.42159 * 108.74901 * 91.40232 * 12 11 10 14 14 C 1.38010 * 119.44341 * 272.77042 * 13 12 11 15 15 H 1.09007 * 109.46573 * 303.42682 * 14 13 12 16 16 C 1.52996 * 109.47154 * 183.43543 * 14 13 12 17 17 N 1.46497 * 109.47453 * 64.98537 * 16 14 13 18 18 C 1.36939 * 120.00244 * 179.72701 * 17 16 14 19 19 H 1.07997 * 120.00112 * 0.27575 * 18 17 16 20 20 C 1.38810 * 120.00237 * 180.27814 * 18 17 16 21 21 N 1.31629 * 119.99808 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00258 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47137 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47323 * 120.00087 * 22 20 18 25 25 H 1.48499 * 109.47392 * 240.00016 * 22 20 18 26 26 C 1.45118 * 118.76180 * 350.42731 * 9 7 6 27 27 C 1.39518 * 119.00221 * 0.25564 * 6 5 4 28 28 N 1.31664 * 120.63192 * 359.46842 * 27 6 5 29 29 H 1.09008 * 109.47080 * 60.00605 * 1 2 3 30 30 H 1.08999 * 109.46719 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47878 * 300.00508 * 1 2 3 32 32 H 1.07992 * 120.37215 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.81940 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.16444 * 258.79067 * 10 9 7 35 35 H 1.08997 * 109.17130 * 17.98912 * 10 9 7 36 36 H 1.08994 * 109.45482 * 80.05430 * 11 10 9 37 37 H 1.09002 * 109.45087 * 199.98886 * 11 10 9 38 38 H 1.08997 * 109.59145 * 211.18333 * 12 11 10 39 39 H 1.09001 * 109.59259 * 331.62353 * 12 11 10 40 40 H 1.09004 * 109.47047 * 304.98841 * 16 14 13 41 41 H 1.09001 * 109.47330 * 184.99284 * 16 14 13 42 42 H 0.97005 * 120.00016 * 0.02562 * 17 16 14 43 43 H 0.96996 * 119.99738 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.45956 * 149.23945 * 26 9 7 45 45 H 1.08994 * 109.44864 * 29.27673 * 26 9 7 46 46 H 1.08004 * 119.68361 * 179.74622 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4344 1.2687 0.0005 5 6 4.0550 2.5009 0.0011 6 6 3.2522 3.6513 0.0016 7 6 3.8666 4.9935 0.0028 8 8 4.6913 5.2853 -0.8416 9 7 3.5133 5.8955 0.9398 10 6 4.2902 7.1445 1.0511 11 6 3.3660 8.3503 1.2747 12 6 2.1270 8.2070 0.4140 13 8 1.1246 7.5340 1.1646 14 6 1.0867 6.1545 1.1620 15 1 1.0056 5.7952 0.1360 16 6 -0.1233 5.6760 1.9668 17 7 -1.3547 6.0992 1.2955 18 6 -2.5727 5.7777 1.8326 19 1 -2.6254 5.2160 2.7536 20 6 -3.7395 6.1736 1.1935 21 7 -3.6753 6.8585 0.0713 22 14 -5.4008 5.7357 1.9265 23 1 -5.2011 4.9684 3.1822 24 1 -6.1556 6.9802 2.2211 25 1 -6.1667 4.9096 0.9589 26 6 2.3833 5.6011 1.8014 27 6 1.8645 3.5077 0.0070 28 7 1.3137 2.3118 0.0011 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8898 32 1 4.0210 0.3620 0.0005 33 1 5.1323 2.5778 0.0011 34 1 4.9810 7.0626 1.8903 35 1 4.8593 7.2950 0.1337 36 1 3.0757 8.3956 2.3243 37 1 3.8920 9.2659 1.0040 38 1 1.7664 9.1941 0.1252 39 1 2.3665 7.6277 -0.4778 40 1 -0.0881 6.1078 2.9671 41 1 -0.1044 4.5886 2.0397 42 1 -1.3074 6.6034 0.4681 43 1 -4.4906 7.1349 -0.3756 44 1 2.5367 6.0686 2.7740 45 1 2.2943 4.5221 1.9272 46 1 1.2359 4.3860 0.0116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200919945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:25 Heat of formation + Delta-G solvation = -63.521225 kcal Electronic energy + Delta-G solvation = -30266.701308 eV Core-core repulsion = 26157.493087 eV Total energy + Delta-G solvation = -4109.208221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.38661 -41.22618 -39.84253 -38.78511 -36.75189 -36.37794 -34.69464 -33.75352 -32.90306 -31.83162 -30.32970 -28.52876 -27.76936 -26.77395 -25.25627 -24.73711 -24.18811 -22.77381 -22.31483 -20.64269 -19.58060 -19.23458 -18.90254 -18.48655 -17.77803 -17.68480 -17.08372 -16.86221 -16.69750 -16.17724 -15.90817 -15.59233 -15.30739 -15.16431 -14.94380 -14.82367 -14.56735 -14.38997 -14.35164 -14.00710 -13.76138 -13.58535 -13.31759 -13.20525 -12.81406 -12.80357 -12.74938 -12.39569 -12.20397 -12.08367 -11.92760 -11.78904 -11.51153 -11.39353 -11.12111 -10.96146 -10.70793 -10.54300 -9.76417 -9.65510 -8.97340 -7.91076 -5.19841 -0.31572 0.07568 1.38557 1.49015 1.49963 1.59922 1.75734 2.01210 2.54456 2.58598 2.64941 3.09188 3.21408 3.43655 3.56540 3.62639 3.80844 3.88022 3.95039 3.96812 4.02909 4.07511 4.27059 4.29723 4.37972 4.40213 4.42492 4.47404 4.57708 4.62569 4.64616 4.74736 4.78041 4.82378 4.87707 4.93128 5.06180 5.09158 5.20034 5.21005 5.38873 5.52081 6.03753 6.07457 6.29518 6.63564 6.67252 6.86488 7.36597 8.10487 8.34248 9.32940 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008299 B = 0.004808 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3373.155145 B = 5822.812820 C = 8753.738733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.307 6.307 3 C 0.321 3.679 4 C -0.182 4.182 5 C 0.011 3.989 6 C -0.233 4.233 7 C 0.570 3.430 8 O -0.562 6.562 9 N -0.598 5.598 10 C 0.107 3.893 11 C -0.153 4.153 12 C 0.066 3.934 13 O -0.390 6.390 14 C 0.091 3.909 15 H 0.037 0.963 16 C 0.163 3.837 17 N -0.738 5.738 18 C -0.238 4.238 19 H 0.078 0.922 20 C -0.075 4.075 21 N -0.971 5.971 22 Si 0.972 3.028 23 H -0.264 1.264 24 H -0.295 1.295 25 H -0.295 1.295 26 C 0.080 3.920 27 C 0.155 3.845 28 N -0.554 5.554 29 H 0.050 0.950 30 H 0.130 0.870 31 H 0.054 0.946 32 H 0.180 0.820 33 H 0.173 0.827 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.037 0.963 40 H 0.034 0.966 41 H 0.043 0.957 42 H 0.373 0.627 43 H 0.249 0.751 44 H 0.112 0.888 45 H 0.095 0.905 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.956 -8.036 3.504 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.213 6.213 3 C 0.142 3.858 4 C -0.202 4.202 5 C -0.014 4.014 6 C -0.239 4.239 7 C 0.358 3.642 8 O -0.441 6.441 9 N -0.329 5.329 10 C -0.013 4.013 11 C -0.191 4.191 12 C -0.010 4.010 13 O -0.309 6.309 14 C 0.031 3.969 15 H 0.054 0.946 16 C 0.036 3.964 17 N -0.380 5.380 18 C -0.370 4.370 19 H 0.096 0.904 20 C -0.267 4.267 21 N -0.622 5.622 22 Si 0.801 3.199 23 H -0.188 1.188 24 H -0.222 1.222 25 H -0.222 1.222 26 C -0.045 4.045 27 C -0.002 4.002 28 N -0.278 5.278 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.073 0.927 32 H 0.198 0.802 33 H 0.191 0.809 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.132 0.868 38 H 0.115 0.885 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.205 0.795 43 H 0.058 0.942 44 H 0.130 0.870 45 H 0.113 0.887 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 19.377 -8.215 3.343 21.310 hybrid contribution -0.668 0.289 -0.505 0.886 sum 18.709 -7.926 2.838 20.516 Atomic orbital electron populations 1.23078 0.75791 1.04874 1.02197 1.86186 1.24202 1.24014 1.86947 1.20537 0.90485 0.84818 0.89952 1.21312 0.91027 1.00495 1.07332 1.21630 1.01510 0.88976 0.89286 1.20717 0.95135 0.95034 1.12972 1.18260 0.81054 0.84454 0.80386 1.90758 1.36098 1.79733 1.37528 1.47869 1.31368 1.19376 1.34319 1.22065 0.93569 0.81656 1.04038 1.22414 0.95779 0.98867 1.02051 1.22376 0.88348 0.97046 0.93254 1.86393 1.54748 1.18820 1.70931 1.22344 0.94728 0.82309 0.97541 0.94584 1.20771 0.83911 0.96715 0.95009 1.42392 1.00947 1.66344 1.28325 1.19654 0.84799 1.27427 1.05107 0.90361 1.25543 1.01301 1.01706 0.98195 1.69849 1.27416 1.44872 1.20030 0.85091 0.79995 0.76992 0.77804 1.18779 1.22221 1.22191 1.22549 0.84066 1.02671 0.95181 1.23297 0.92023 0.94551 0.90338 1.67400 1.41309 0.99051 1.20001 0.93100 0.85246 0.92733 0.80219 0.80923 0.88875 0.89521 0.89685 0.86804 0.88468 0.94475 0.94808 0.93897 0.79508 0.94173 0.86968 0.88672 0.82171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.37 113.37 1.18 1.93 16 2 O -0.31 -7.27 10.46 -88.03 -0.92 -8.19 16 3 C 0.32 8.16 7.49 84.83 0.64 8.80 16 4 C -0.18 -3.49 10.02 22.43 0.22 -3.26 16 5 C 0.01 0.22 9.90 22.70 0.22 0.45 16 6 C -0.23 -5.94 4.83 -20.00 -0.10 -6.04 16 7 C 0.57 15.39 7.15 86.72 0.62 16.01 16 8 O -0.56 -17.96 16.38 -3.97 -0.06 -18.02 16 9 N -0.60 -13.96 2.19 -821.66 -1.80 -15.76 16 10 C 0.11 2.02 6.20 86.38 0.54 2.55 16 11 C -0.15 -2.77 5.79 30.31 0.18 -2.60 16 12 C 0.07 1.72 6.38 71.50 0.46 2.17 16 13 O -0.39 -13.16 9.38 -117.80 -1.11 -14.27 16 14 C 0.09 2.93 1.73 31.21 0.05 2.98 16 15 H 0.04 1.31 5.65 -2.38 -0.01 1.30 16 16 C 0.16 6.38 5.84 86.38 0.50 6.88 16 17 N -0.74 -37.96 5.54 -343.46 -1.90 -39.86 16 18 C -0.24 -13.34 9.99 84.03 0.84 -12.50 16 19 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 21 N -0.97 -60.54 13.06 21.65 0.28 -60.25 16 22 Si 0.97 46.46 29.55 68.60 2.03 48.49 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 26 C 0.08 1.91 4.41 87.25 0.38 2.29 16 27 C 0.15 4.55 8.74 85.03 0.74 5.29 16 28 N -0.55 -16.80 9.18 -307.81 -2.82 -19.62 16 29 H 0.05 1.21 8.10 -2.38 -0.02 1.19 16 30 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 32 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.80 6.93 -2.39 -0.02 1.78 16 36 H 0.08 1.55 8.01 -2.39 -0.02 1.53 16 37 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.04 1.05 7.40 -2.39 -0.02 1.03 16 40 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 42 H 0.37 20.99 7.65 -92.70 -0.71 20.28 16 43 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 44 H 0.11 2.30 8.11 -2.39 -0.02 2.28 16 45 H 0.10 2.22 5.48 -2.39 -0.01 2.21 16 46 H 0.16 5.24 3.53 -2.91 -0.01 5.23 16 Total: -1.00 -74.12 371.49 0.94 -73.18 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.31 Total: 33.27 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 6.94 Total: 21.04 kcal Atomic # 7 Polarization: -129.26 SS G_CDS: -6.24 Total: -135.50 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -2.09 Total: -40.47 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -74.12 0.94 -73.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200919945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.660 kcal (2) G-P(sol) polarization free energy of solvation -74.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds