Wall clock time and date at job start Tue Mar 31 2020 19:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35501 * 117.00237 * 2 1 4 4 C 1.39163 * 119.52524 * 179.73168 * 3 2 1 5 5 C 1.37957 * 119.26098 * 180.30193 * 4 3 2 6 6 C 1.40284 * 118.35962 * 359.97438 * 5 4 3 7 7 C 1.47618 * 120.49778 * 179.97438 * 6 5 4 8 8 O 1.21583 * 119.99452 * 132.97244 * 7 6 5 9 9 N 1.34771 * 120.00157 * 312.96890 * 7 6 5 10 10 C 1.47509 * 118.75953 * 3.36641 * 9 7 6 11 11 C 1.53570 * 111.02853 * 221.60489 * 10 9 7 12 12 C 1.51526 * 109.58473 * 39.97850 * 11 10 9 13 13 O 1.42154 * 108.75686 * 268.59827 * 12 11 10 14 14 C 1.38011 * 119.43774 * 87.22956 * 13 12 11 15 15 H 1.09003 * 109.47230 * 56.57130 * 14 13 12 16 16 C 1.52999 * 109.47185 * 176.56571 * 14 13 12 17 17 N 1.46503 * 109.47461 * 300.00000 * 16 14 13 18 18 C 1.36933 * 120.00151 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99980 * 359.97438 * 18 17 16 20 20 C 1.38809 * 119.99627 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00601 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99901 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46985 * 59.99868 * 22 20 18 24 24 H 1.48494 * 109.47211 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47004 * 300.00032 * 22 20 18 26 26 C 1.45127 * 118.75501 * 183.09915 * 9 7 6 27 27 C 1.39526 * 119.00174 * 0.02562 * 6 5 4 28 28 N 1.31656 * 120.62592 * 0.02562 * 27 6 5 29 29 H 1.09008 * 109.46731 * 299.99724 * 1 2 3 30 30 H 1.08999 * 109.47659 * 59.99523 * 1 2 3 31 31 H 1.09001 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.07992 * 120.37073 * 0.22661 * 4 3 2 33 33 H 1.08002 * 120.81990 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.16798 * 342.00588 * 10 9 7 35 35 H 1.09000 * 109.16306 * 101.25652 * 10 9 7 36 36 H 1.09000 * 109.45094 * 160.01562 * 11 10 9 37 37 H 1.09002 * 109.45340 * 279.96537 * 11 10 9 38 38 H 1.09006 * 109.58953 * 28.38130 * 12 11 10 39 39 H 1.08996 * 109.59368 * 148.67178 * 12 11 10 40 40 H 1.09003 * 109.47091 * 60.00294 * 16 14 13 41 41 H 1.09000 * 109.47542 * 179.97438 * 16 14 13 42 42 H 0.96999 * 119.99093 * 0.02562 * 17 16 14 43 43 H 0.96997 * 120.00490 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.45451 * 210.76023 * 26 9 7 45 45 H 1.08996 * 109.45862 * 330.71613 * 26 9 7 46 46 H 1.07996 * 119.68259 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4344 1.2686 0.0057 5 6 4.0551 2.5006 0.0120 6 6 3.2524 3.6511 0.0119 7 6 3.8669 4.9933 0.0191 8 8 3.4709 5.8472 -0.7506 9 7 4.8667 5.2721 0.8787 10 6 5.3764 4.1949 1.7480 11 6 5.6325 4.7104 3.1717 12 6 4.5226 5.6597 3.5755 13 8 4.9040 6.9838 3.2262 14 6 4.6264 7.4580 1.9602 15 1 3.5563 7.3782 1.7689 16 6 5.0545 8.9234 1.8593 17 7 4.3209 9.7159 2.8493 18 6 4.5403 11.0640 2.9460 19 1 5.2545 11.5431 2.2927 20 6 3.8456 11.8147 3.8845 21 7 2.9756 11.2308 4.6810 22 14 4.1454 13.6537 4.0169 23 1 3.8161 14.3034 2.7228 24 1 3.2856 14.2196 5.0872 25 1 5.5724 13.9002 4.3456 26 6 5.4051 6.6195 0.9100 27 6 1.8646 3.5077 0.0060 28 7 1.3139 2.3118 0.0011 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 4.0209 0.3618 0.0064 33 1 5.1324 2.5775 0.0169 34 1 4.6439 3.3886 1.7856 35 1 6.3090 3.8119 1.3336 36 1 5.6595 3.8683 3.8633 37 1 6.5874 5.2352 3.2015 38 1 3.6050 5.3932 3.0509 39 1 4.3603 5.5956 4.6514 40 1 6.1246 9.0033 2.0506 41 1 4.8357 9.2979 0.8593 42 1 3.6803 9.2853 3.4368 43 1 2.4898 11.7554 5.3365 44 1 6.4598 6.5827 1.1830 45 1 5.3008 7.0751 -0.0746 46 1 1.2361 4.3860 0.0054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200919946.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:29 Heat of formation + Delta-G solvation = -71.963523 kcal Electronic energy + Delta-G solvation = -29326.902608 eV Core-core repulsion = 25217.328302 eV Total energy + Delta-G solvation = -4109.574307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.24943 -41.25526 -39.79332 -38.69076 -36.98973 -36.28761 -34.37787 -33.79249 -32.66773 -32.20870 -30.18623 -28.40176 -27.91902 -26.79868 -25.38492 -24.46643 -24.07104 -22.77611 -22.29514 -20.71877 -19.51306 -19.24731 -18.78535 -18.27764 -17.66380 -17.58502 -17.11095 -16.90804 -16.64456 -16.16996 -15.87484 -15.68763 -15.28127 -15.14499 -14.94245 -14.88398 -14.73679 -14.42450 -14.26546 -13.93822 -13.87265 -13.54624 -13.29247 -13.11049 -12.79770 -12.72700 -12.66473 -12.37608 -12.24856 -12.16232 -12.04203 -11.83140 -11.49798 -11.29048 -10.96147 -10.94940 -10.73597 -10.57283 -9.77660 -9.61841 -9.00631 -7.93428 -5.23222 -0.30616 0.06695 1.45462 1.47283 1.51466 1.57316 1.82839 2.02521 2.56833 2.58095 2.71338 3.10578 3.31140 3.39761 3.61122 3.68755 3.81063 3.93009 3.96975 3.99416 4.07015 4.13528 4.27772 4.38155 4.40387 4.41856 4.43888 4.51324 4.60386 4.67023 4.69319 4.71799 4.76647 4.82193 4.88726 4.92283 5.08750 5.12220 5.17928 5.20869 5.45757 5.47928 6.04807 6.15070 6.26946 6.61786 6.73982 6.95770 7.33228 8.08016 8.32978 9.30366 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.002465 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.590468 B =11357.853397 C =11729.899991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.309 6.309 3 C 0.323 3.677 4 C -0.181 4.181 5 C 0.001 3.999 6 C -0.227 4.227 7 C 0.559 3.441 8 O -0.574 6.574 9 N -0.598 5.598 10 C 0.093 3.907 11 C -0.156 4.156 12 C 0.064 3.936 13 O -0.394 6.394 14 C 0.104 3.896 15 H 0.019 0.981 16 C 0.162 3.838 17 N -0.741 5.741 18 C -0.248 4.248 19 H 0.079 0.921 20 C -0.079 4.079 21 N -0.972 5.972 22 Si 0.980 3.020 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.275 1.275 26 C 0.094 3.906 27 C 0.182 3.818 28 N -0.557 5.557 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.127 0.873 32 H 0.182 0.818 33 H 0.183 0.817 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.093 0.907 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.110 0.890 45 H 0.085 0.915 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.401 -29.753 -8.454 31.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.215 6.215 3 C 0.144 3.856 4 C -0.201 4.201 5 C -0.024 4.024 6 C -0.233 4.233 7 C 0.348 3.652 8 O -0.454 6.454 9 N -0.329 5.329 10 C -0.028 4.028 11 C -0.194 4.194 12 C -0.012 4.012 13 O -0.313 6.313 14 C 0.043 3.957 15 H 0.036 0.964 16 C 0.035 3.965 17 N -0.383 5.383 18 C -0.379 4.379 19 H 0.097 0.903 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.808 3.192 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.201 1.201 26 C -0.030 4.030 27 C 0.025 3.975 28 N -0.281 5.281 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.200 0.800 33 H 0.200 0.800 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.137 0.863 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.111 0.889 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.128 0.872 45 H 0.104 0.896 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.593 -29.436 -8.770 30.924 hybrid contribution -0.309 1.349 0.241 1.405 sum 3.283 -28.086 -8.530 29.536 Atomic orbital electron populations 1.23110 0.75714 1.04952 1.02288 1.86212 1.24424 1.23987 1.86892 1.20531 0.90626 0.84692 0.89729 1.21350 0.91099 1.00566 1.07100 1.21943 1.01928 0.89006 0.89501 1.20584 0.95682 0.93987 1.13031 1.18516 0.79328 0.87347 0.79998 1.90818 1.62964 1.49993 1.41592 1.47915 1.35511 1.11288 1.38142 1.22667 1.01712 0.88569 0.89805 1.22443 0.99671 1.00736 0.96589 1.22376 0.96840 0.81369 1.00616 1.86365 1.81479 1.31875 1.31608 1.22003 0.96497 0.93348 0.83823 0.96356 1.20774 0.95593 0.87770 0.92367 1.42414 1.49099 1.05093 1.41680 1.19656 1.18392 0.85377 1.14491 0.90336 1.25657 0.99622 1.02930 0.98905 1.69846 1.30756 1.36474 1.25167 0.85126 0.77471 0.79556 0.77078 1.20334 1.22082 1.20053 1.22294 0.99041 0.81595 1.00099 1.22426 0.91712 0.93831 0.89567 1.67354 1.41112 0.98809 1.20775 0.92541 0.92624 0.85509 0.80026 0.79962 0.88035 0.87334 0.86259 0.90057 0.94483 0.88935 0.94689 0.94681 0.79509 0.94027 0.87186 0.89640 0.82694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.37 113.37 1.18 1.58 16 2 O -0.31 -4.89 10.46 -88.02 -0.92 -5.81 16 3 C 0.32 5.68 7.49 84.83 0.64 6.31 16 4 C -0.18 -2.10 10.02 22.43 0.22 -1.88 16 5 C 0.00 0.01 7.48 22.70 0.17 0.18 16 6 C -0.23 -4.62 4.95 -19.99 -0.10 -4.71 16 7 C 0.56 14.77 7.23 86.72 0.63 15.40 16 8 O -0.57 -20.64 16.42 -3.98 -0.07 -20.71 16 9 N -0.60 -13.29 2.18 -820.57 -1.79 -15.08 16 10 C 0.09 1.19 4.73 86.38 0.41 1.60 16 11 C -0.16 -2.40 5.79 30.30 0.18 -2.22 16 12 C 0.06 1.64 6.37 71.50 0.46 2.09 16 13 O -0.39 -14.14 9.18 -117.82 -1.08 -15.22 16 14 C 0.10 3.78 2.74 31.39 0.09 3.87 16 15 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 16 C 0.16 7.07 5.95 86.38 0.51 7.58 16 17 N -0.74 -41.08 5.49 -343.45 -1.89 -42.96 16 18 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 19 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 20 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 21 N -0.97 -62.53 13.06 21.65 0.28 -62.25 16 22 Si 0.98 47.90 29.55 68.60 2.03 49.93 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 26 C 0.09 2.56 4.93 87.43 0.43 2.99 16 27 C 0.18 4.15 10.87 85.03 0.92 5.08 16 28 N -0.56 -12.04 9.18 -307.82 -2.82 -14.86 16 29 H 0.06 0.74 8.10 -2.38 -0.02 0.72 16 30 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 31 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 33 H 0.18 0.93 6.63 -2.91 -0.02 0.91 16 34 H 0.10 1.05 4.86 -2.39 -0.01 1.04 16 35 H 0.11 0.69 7.85 -2.39 -0.02 0.67 16 36 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.37 8.01 -2.39 -0.02 1.35 16 38 H 0.04 1.00 7.40 -2.38 -0.02 0.98 16 39 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.37 22.39 7.53 -92.71 -0.70 21.69 16 43 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 44 H 0.11 2.47 8.11 -2.39 -0.02 2.45 16 45 H 0.09 2.54 7.23 -2.39 -0.02 2.53 16 46 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -81.83 376.21 1.08 -80.75 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.30 Total: 26.47 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 7.04 Total: 19.74 kcal Atomic # 7 Polarization: -128.94 SS G_CDS: -6.22 Total: -135.15 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -2.07 Total: -41.75 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -81.83 1.08 -80.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200919946.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.788 kcal (2) G-P(sol) polarization free energy of solvation -81.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds