Wall clock time and date at job start Tue Mar 31 2020 18:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34673 * 119.70070 * 2 1 4 4 O 1.21961 * 119.96012 * 359.97438 * 3 2 1 5 5 C 1.41239 * 120.08504 * 179.97438 * 3 2 1 6 6 C 1.36111 * 119.51196 * 0.02562 * 5 3 2 7 7 C 1.40411 * 119.41507 * 359.73249 * 6 5 3 8 8 C 1.36296 * 119.90257 * 0.51529 * 7 6 5 9 9 C 1.47881 * 119.75412 * 179.77325 * 8 7 6 10 10 O 1.21547 * 119.99900 * 94.83290 * 9 8 7 11 11 N 1.34773 * 120.00258 * 274.82832 * 9 8 7 12 12 C 1.47515 * 118.75798 * 354.88484 * 11 9 8 13 13 C 1.53565 * 111.03149 * 138.34672 * 12 11 9 14 14 C 1.51541 * 109.58091 * 320.01903 * 13 12 11 15 15 O 1.42150 * 108.75019 * 91.39971 * 14 13 12 16 16 C 1.38011 * 119.44574 * 272.76818 * 15 14 13 17 17 H 1.08997 * 109.47372 * 303.43119 * 16 15 14 18 18 C 1.53003 * 109.47074 * 183.43492 * 16 15 14 19 19 N 1.46502 * 109.47196 * 64.99355 * 18 16 15 20 20 C 1.36930 * 119.99871 * 179.72793 * 19 18 16 21 21 H 1.08007 * 120.00121 * 0.26866 * 20 19 18 22 22 C 1.38813 * 120.00248 * 180.27437 * 20 19 18 23 23 N 1.31618 * 119.99383 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00271 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47329 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.47101 * 120.00118 * 24 22 20 27 27 H 1.48497 * 109.47149 * 239.99790 * 24 22 20 28 28 C 1.45124 * 118.75875 * 174.85871 * 11 9 8 29 29 H 1.09003 * 109.47617 * 274.89052 * 1 2 3 30 30 H 1.09001 * 109.47456 * 34.89407 * 1 2 3 31 31 H 1.09005 * 109.47119 * 154.89228 * 1 2 3 32 32 H 1.08006 * 120.24638 * 180.02562 * 5 3 2 33 33 H 1.08002 * 120.29330 * 180.02562 * 6 5 3 34 34 H 1.08000 * 120.04821 * 180.27698 * 7 6 5 35 35 H 1.08996 * 109.16206 * 258.74425 * 12 11 9 36 36 H 1.08994 * 109.16660 * 17.94171 * 12 11 9 37 37 H 1.08994 * 109.45861 * 80.05280 * 13 12 11 38 38 H 1.09004 * 109.44885 * 199.99201 * 13 12 11 39 39 H 1.08995 * 109.59244 * 211.18335 * 14 13 12 40 40 H 1.09006 * 109.58681 * 331.62708 * 14 13 12 41 41 H 1.09003 * 109.46897 * 304.99240 * 18 16 15 42 42 H 1.09003 * 109.47053 * 184.99310 * 18 16 15 43 43 H 0.96996 * 119.99911 * 359.97438 * 19 18 16 44 44 H 0.97001 * 120.00030 * 180.02562 * 23 22 20 45 45 H 1.09003 * 109.45871 * 149.28491 * 28 11 9 46 46 H 1.08997 * 109.44920 * 29.32175 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1322 1.1698 0.0000 4 8 1.5162 2.2224 -0.0005 5 6 3.5446 1.1793 0.0005 6 6 4.2230 -0.0007 0.0005 7 6 3.5064 -1.2082 0.0057 8 6 2.1435 -1.1895 0.0000 9 6 1.3921 -2.4632 0.0004 10 8 1.0026 -2.9387 1.0490 11 7 1.1391 -3.0967 -1.1619 12 6 1.5231 -2.4406 -2.4261 13 6 2.1388 -3.4499 -3.4060 14 6 3.0386 -4.4071 -2.6507 15 8 2.2733 -5.5379 -2.2553 16 6 1.5811 -5.5050 -1.0618 17 1 2.2725 -5.2927 -0.2465 18 6 0.9117 -6.8600 -0.8230 19 7 1.9401 -7.8884 -0.6466 20 6 1.5761 -9.1875 -0.4127 21 1 0.5309 -9.4549 -0.3627 22 6 2.5505 -10.1610 -0.2398 23 7 3.8242 -9.8352 -0.3012 24 14 2.0540 -11.9332 0.0799 25 1 0.5728 -12.0361 0.1010 26 1 2.5947 -12.8008 -0.9973 27 1 2.5999 -12.3716 1.3894 28 6 0.4997 -4.3989 -1.1225 29 1 -0.3634 0.0876 1.0239 30 1 -0.3634 0.8429 -0.5879 31 1 -0.3633 -0.9306 -0.4361 32 1 4.0823 2.1159 0.0010 33 1 5.3030 -0.0082 0.0014 34 1 4.0343 -2.1503 0.0103 35 1 0.6386 -1.9943 -2.8806 36 1 2.2504 -1.6565 -2.2157 37 1 1.3436 -4.0105 -3.8973 38 1 2.7237 -2.9172 -4.1559 39 1 3.8563 -4.7268 -3.2966 40 1 3.4404 -3.9108 -1.7672 41 1 0.2880 -7.1132 -1.6803 42 1 0.2934 -6.8069 0.0731 43 1 2.8788 -7.6483 -0.6918 44 1 4.5052 -10.5154 -0.1808 45 1 -0.1069 -4.5328 -2.0183 46 1 -0.1366 -4.4643 -0.2400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201380078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:26 Heat of formation + Delta-G solvation = -44.892209 kcal Electronic energy + Delta-G solvation = -30002.979312 eV Core-core repulsion = 25894.578906 eV Total energy + Delta-G solvation = -4108.400406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.05202 -40.51901 -38.74856 -37.10517 -35.90495 -35.03865 -34.71704 -33.01219 -31.12134 -30.86008 -28.91192 -28.07672 -26.94619 -25.83494 -24.49239 -23.09654 -22.73452 -21.89572 -21.08329 -20.03163 -18.40506 -17.79099 -17.45363 -17.19241 -17.02716 -16.60246 -16.20365 -15.99772 -15.72688 -15.06589 -14.94546 -14.85764 -14.35910 -14.02267 -13.81895 -13.58184 -13.28749 -13.17195 -13.11786 -12.93358 -12.74198 -12.44581 -12.44360 -12.25795 -12.17306 -11.77134 -11.49042 -11.14613 -10.88759 -10.81935 -10.72546 -10.55142 -10.37661 -10.15190 -10.00406 -9.72327 -9.58527 -8.87866 -8.85197 -8.43044 -6.89122 -5.73199 -3.01635 0.21961 1.35666 1.64656 2.22761 2.57899 3.17904 3.45425 3.50747 3.53159 3.59355 3.83318 4.15154 4.39175 4.44929 4.51726 4.61103 4.68297 4.76043 4.79548 4.86699 4.93863 5.03395 5.06987 5.18516 5.20518 5.29747 5.34019 5.42684 5.46858 5.57154 5.59972 5.67790 5.78472 5.80500 5.84943 5.94864 5.97440 6.18485 6.26491 6.55637 6.57658 6.69664 6.74001 7.51476 7.58684 7.71979 7.87661 8.44933 9.56780 10.13832 10.49503 11.49736 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.002658 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.225339 B =10531.050531 C =10563.120897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.485 5.485 3 C 0.516 3.484 4 O -0.547 6.547 5 C -0.227 4.227 6 C -0.017 4.017 7 C -0.189 4.189 8 C 0.131 3.869 9 C 0.549 3.451 10 O -0.501 6.501 11 N -0.593 5.593 12 C 0.100 3.900 13 C -0.165 4.165 14 C 0.073 3.927 15 O -0.366 6.366 16 C 0.089 3.911 17 H 0.053 0.947 18 C 0.166 3.834 19 N -0.726 5.726 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.076 3.924 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.046 0.954 41 H 0.029 0.971 42 H 0.036 0.964 43 H 0.387 0.613 44 H 0.254 0.746 45 H 0.091 0.909 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.837 22.590 -5.536 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.198 5.198 3 C 0.317 3.683 4 O -0.429 6.429 5 C -0.249 4.249 6 C -0.039 4.039 7 C -0.213 4.213 8 C 0.021 3.979 9 C 0.333 3.667 10 O -0.374 6.374 11 N -0.326 5.326 12 C -0.022 4.022 13 C -0.203 4.203 14 C -0.004 4.004 15 O -0.284 6.284 16 C 0.029 3.971 17 H 0.071 0.929 18 C 0.038 3.962 19 N -0.370 5.370 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.046 4.046 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.169 0.831 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.221 0.779 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.658 22.694 -5.073 23.406 hybrid contribution 0.234 -0.647 0.311 0.755 sum -2.424 22.047 -4.762 22.685 Atomic orbital electron populations 1.22215 0.76784 1.04544 1.04784 1.45522 1.09257 1.05381 1.59691 1.17319 0.89340 0.82272 0.79323 1.90950 1.69978 1.29044 1.52961 1.22345 0.92439 1.00359 1.09772 1.21419 1.01171 0.91151 0.90125 1.20805 0.90591 1.00585 1.09286 1.20330 0.93283 0.85953 0.98357 1.18125 0.79977 0.83812 0.84774 1.90927 1.49416 1.66390 1.30663 1.47991 1.59240 1.19778 1.05586 1.22119 1.00399 0.95625 0.84027 1.22500 1.01398 0.98040 0.98389 1.22146 0.93246 0.87071 0.97958 1.86464 1.63698 1.39055 1.39182 1.22294 0.92384 0.95781 0.86648 0.92913 1.20611 0.92242 0.85327 0.98041 1.42217 1.04304 1.03944 1.86559 1.19263 0.92437 0.84585 1.40595 0.91105 1.24738 0.95242 0.98109 1.02926 1.69682 0.98702 1.32648 1.57012 0.86111 0.77491 0.85156 0.77398 1.20560 1.21899 1.21908 1.22632 0.96797 0.80495 1.04717 0.89926 0.88381 0.89990 0.82855 0.83738 0.83091 0.90937 0.89932 0.89616 0.89354 0.88929 0.93520 0.95358 0.94695 0.77940 0.93627 0.89042 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 9.98 59.84 0.60 1.11 16 2 N -0.48 -5.00 3.02 -122.81 -0.37 -5.37 16 3 C 0.52 5.92 7.43 -15.17 -0.11 5.81 16 4 O -0.55 -8.00 16.72 4.95 0.08 -7.92 16 5 C -0.23 -1.95 10.00 -39.21 -0.39 -2.35 16 6 C -0.02 -0.12 10.08 -39.53 -0.40 -0.52 16 7 C -0.19 -1.58 9.22 -39.46 -0.36 -1.95 16 8 C 0.13 1.33 4.44 -82.33 -0.37 0.96 16 9 C 0.55 6.54 5.16 -12.31 -0.06 6.48 16 10 O -0.50 -7.87 16.51 5.32 0.09 -7.78 16 11 N -0.59 -6.17 2.19 -173.57 -0.38 -6.55 16 12 C 0.10 0.76 6.07 -3.19 -0.02 0.74 16 13 C -0.17 -1.32 5.79 -27.18 -0.16 -1.48 16 14 C 0.07 0.82 6.38 36.42 0.23 1.05 16 15 O -0.37 -5.85 9.38 -26.52 -0.25 -6.10 16 16 C 0.09 1.44 2.68 -25.78 -0.07 1.37 16 17 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 18 C 0.17 3.32 5.92 -4.04 -0.02 3.29 16 19 N -0.73 -18.69 5.54 -59.90 -0.33 -19.02 16 20 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 21 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 24 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 C 0.08 0.94 4.91 -3.83 -0.02 0.92 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 0.81 7.55 -51.93 -0.39 0.42 16 31 H 0.08 0.66 6.69 -51.93 -0.35 0.31 16 32 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.57 5.91 -51.93 -0.31 0.26 16 37 H 0.09 0.76 8.01 -51.93 -0.42 0.34 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.51 7.40 -51.93 -0.38 0.12 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.39 10.60 7.65 -40.82 -0.31 10.28 16 44 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 46 H 0.10 1.30 7.21 -51.93 -0.37 0.92 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -36.05 376.67 -7.91 -43.97 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.73 Total: 5.21 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -1.40 Total: 8.07 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.36 Total: -58.64 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.08 Total: -21.80 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.05 -7.91 -43.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201380078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.924 kcal (2) G-P(sol) polarization free energy of solvation -36.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds