Wall clock time and date at job start Tue Mar 31 2020 18:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34673 * 119.70070 * 2 1 4 4 O 1.21961 * 119.96012 * 359.97438 * 3 2 1 5 5 C 1.41239 * 120.08504 * 179.97438 * 3 2 1 6 6 C 1.36111 * 119.51196 * 0.02562 * 5 3 2 7 7 C 1.40411 * 119.41507 * 359.73249 * 6 5 3 8 8 C 1.36296 * 119.90257 * 0.51529 * 7 6 5 9 9 C 1.47881 * 119.75412 * 179.77325 * 8 7 6 10 10 O 1.21547 * 119.99900 * 94.83290 * 9 8 7 11 11 N 1.34773 * 120.00258 * 274.82832 * 9 8 7 12 12 C 1.47515 * 118.75798 * 354.88484 * 11 9 8 13 13 C 1.53565 * 111.03149 * 138.34672 * 12 11 9 14 14 C 1.51541 * 109.58091 * 320.01903 * 13 12 11 15 15 O 1.42150 * 108.75019 * 91.39971 * 14 13 12 16 16 C 1.38011 * 119.44574 * 272.76818 * 15 14 13 17 17 H 1.08997 * 109.47372 * 303.43119 * 16 15 14 18 18 C 1.53003 * 109.47074 * 183.43492 * 16 15 14 19 19 N 1.46502 * 109.47196 * 64.99355 * 18 16 15 20 20 C 1.36930 * 119.99871 * 179.72793 * 19 18 16 21 21 H 1.08007 * 120.00121 * 0.26866 * 20 19 18 22 22 C 1.38813 * 120.00248 * 180.27437 * 20 19 18 23 23 N 1.31618 * 119.99383 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00271 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47329 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.47101 * 120.00118 * 24 22 20 27 27 H 1.48497 * 109.47149 * 239.99790 * 24 22 20 28 28 C 1.45124 * 118.75875 * 174.85871 * 11 9 8 29 29 H 1.09003 * 109.47617 * 274.89052 * 1 2 3 30 30 H 1.09001 * 109.47456 * 34.89407 * 1 2 3 31 31 H 1.09005 * 109.47119 * 154.89228 * 1 2 3 32 32 H 1.08006 * 120.24638 * 180.02562 * 5 3 2 33 33 H 1.08002 * 120.29330 * 180.02562 * 6 5 3 34 34 H 1.08000 * 120.04821 * 180.27698 * 7 6 5 35 35 H 1.08996 * 109.16206 * 258.74425 * 12 11 9 36 36 H 1.08994 * 109.16660 * 17.94171 * 12 11 9 37 37 H 1.08994 * 109.45861 * 80.05280 * 13 12 11 38 38 H 1.09004 * 109.44885 * 199.99201 * 13 12 11 39 39 H 1.08995 * 109.59244 * 211.18335 * 14 13 12 40 40 H 1.09006 * 109.58681 * 331.62708 * 14 13 12 41 41 H 1.09003 * 109.46897 * 304.99240 * 18 16 15 42 42 H 1.09003 * 109.47053 * 184.99310 * 18 16 15 43 43 H 0.96996 * 119.99911 * 359.97438 * 19 18 16 44 44 H 0.97001 * 120.00030 * 180.02562 * 23 22 20 45 45 H 1.09003 * 109.45871 * 149.28491 * 28 11 9 46 46 H 1.08997 * 109.44920 * 29.32175 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1322 1.1698 0.0000 4 8 1.5162 2.2224 -0.0005 5 6 3.5446 1.1793 0.0005 6 6 4.2230 -0.0007 0.0005 7 6 3.5064 -1.2082 0.0057 8 6 2.1435 -1.1895 0.0000 9 6 1.3921 -2.4632 0.0004 10 8 1.0026 -2.9387 1.0490 11 7 1.1391 -3.0967 -1.1619 12 6 1.5231 -2.4406 -2.4261 13 6 2.1388 -3.4499 -3.4060 14 6 3.0386 -4.4071 -2.6507 15 8 2.2733 -5.5379 -2.2553 16 6 1.5811 -5.5050 -1.0618 17 1 2.2725 -5.2927 -0.2465 18 6 0.9117 -6.8600 -0.8230 19 7 1.9401 -7.8884 -0.6466 20 6 1.5761 -9.1875 -0.4127 21 1 0.5309 -9.4549 -0.3627 22 6 2.5505 -10.1610 -0.2398 23 7 3.8242 -9.8352 -0.3012 24 14 2.0540 -11.9332 0.0799 25 1 0.5728 -12.0361 0.1010 26 1 2.5947 -12.8008 -0.9973 27 1 2.5999 -12.3716 1.3894 28 6 0.4997 -4.3989 -1.1225 29 1 -0.3634 0.0876 1.0239 30 1 -0.3634 0.8429 -0.5879 31 1 -0.3633 -0.9306 -0.4361 32 1 4.0823 2.1159 0.0010 33 1 5.3030 -0.0082 0.0014 34 1 4.0343 -2.1503 0.0103 35 1 0.6386 -1.9943 -2.8806 36 1 2.2504 -1.6565 -2.2157 37 1 1.3436 -4.0105 -3.8973 38 1 2.7237 -2.9172 -4.1559 39 1 3.8563 -4.7268 -3.2966 40 1 3.4404 -3.9108 -1.7672 41 1 0.2880 -7.1132 -1.6803 42 1 0.2934 -6.8069 0.0731 43 1 2.8788 -7.6483 -0.6918 44 1 4.5052 -10.5154 -0.1808 45 1 -0.1069 -4.5328 -2.0183 46 1 -0.1366 -4.4643 -0.2400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201380078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:25 Heat of formation + Delta-G solvation = -70.242710 kcal Electronic energy + Delta-G solvation = -30004.078592 eV Core-core repulsion = 25894.578906 eV Total energy + Delta-G solvation = -4109.499687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.86530 -41.46190 -39.83465 -37.98212 -37.01653 -36.32258 -35.72622 -34.36861 -32.69686 -31.82682 -30.17661 -28.78997 -28.03004 -26.93566 -25.77442 -24.31525 -23.77997 -22.91859 -22.33402 -20.89348 -19.31502 -19.17186 -18.55669 -18.20578 -18.01192 -17.67936 -17.12787 -16.99843 -16.70340 -16.44975 -15.89310 -15.80149 -15.65819 -15.16507 -14.91287 -14.79290 -14.66146 -14.38347 -13.98061 -13.84325 -13.75926 -13.57409 -13.34757 -13.22019 -13.10841 -12.94362 -12.79490 -12.63885 -12.34378 -12.15795 -12.02985 -11.83105 -11.65978 -11.48054 -11.21013 -11.03594 -10.97481 -10.61000 -9.88142 -9.20829 -8.99253 -7.93170 -5.22179 -0.48084 0.61851 0.77637 1.36552 1.48586 1.49680 1.59787 1.77508 2.44801 2.57047 2.71235 2.82841 3.40974 3.45937 3.56914 3.74692 3.85916 3.92418 3.98959 4.02623 4.05344 4.12385 4.17582 4.21687 4.29154 4.36100 4.43042 4.50653 4.52812 4.63308 4.68140 4.77119 4.79982 4.90014 4.93989 5.06511 5.10238 5.14418 5.16279 5.31437 5.34270 5.49877 5.79455 5.87985 6.28081 6.60434 6.75151 6.78141 7.34689 8.09100 8.33323 9.30805 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.002658 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.225339 B =10531.050531 C =10563.120897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.484 5.484 3 C 0.504 3.496 4 O -0.591 6.591 5 C -0.233 4.233 6 C 0.002 3.998 7 C -0.176 4.176 8 C 0.115 3.885 9 C 0.553 3.447 10 O -0.547 6.547 11 N -0.586 5.586 12 C 0.098 3.902 13 C -0.154 4.154 14 C 0.063 3.937 15 O -0.395 6.395 16 C 0.105 3.895 17 H 0.027 0.973 18 C 0.161 3.839 19 N -0.740 5.740 20 C -0.244 4.244 21 H 0.078 0.922 22 C -0.077 4.077 23 N -0.969 5.969 24 Si 0.975 3.025 25 H -0.265 1.265 26 H -0.292 1.292 27 H -0.294 1.294 28 C 0.089 3.911 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.169 0.831 33 H 0.185 0.815 34 H 0.161 0.839 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.049 0.951 41 H 0.034 0.966 42 H 0.037 0.963 43 H 0.374 0.626 44 H 0.251 0.749 45 H 0.113 0.887 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 23.474 -6.809 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.197 5.197 3 C 0.308 3.692 4 O -0.477 6.477 5 C -0.254 4.254 6 C -0.019 4.019 7 C -0.200 4.200 8 C 0.005 3.995 9 C 0.338 3.662 10 O -0.424 6.424 11 N -0.317 5.317 12 C -0.023 4.023 13 C -0.192 4.192 14 C -0.013 4.013 15 O -0.314 6.314 16 C 0.044 3.956 17 H 0.045 0.955 18 C 0.034 3.966 19 N -0.383 5.383 20 C -0.376 4.376 21 H 0.096 0.904 22 C -0.269 4.269 23 N -0.620 5.620 24 Si 0.804 3.196 25 H -0.189 1.189 26 H -0.219 1.219 27 H -0.221 1.221 28 C -0.034 4.034 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.187 0.813 33 H 0.202 0.798 34 H 0.179 0.821 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.138 0.862 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.206 0.794 44 H 0.060 0.940 45 H 0.131 0.869 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.386 23.593 -6.387 24.559 hybrid contribution 0.188 -0.904 0.666 1.138 sum -2.199 22.690 -5.720 23.503 Atomic orbital electron populations 1.22262 0.76461 1.05089 1.04637 1.45508 1.09653 1.05235 1.59275 1.17804 0.90439 0.81855 0.79145 1.90924 1.70917 1.30331 1.55493 1.22509 0.91067 1.01878 1.09953 1.21746 1.02876 0.89475 0.87808 1.21129 0.89978 1.01830 1.07048 1.20168 0.93712 0.84960 1.00700 1.18371 0.79307 0.84184 0.84340 1.90905 1.51351 1.67772 1.32330 1.48027 1.58374 1.18853 1.06454 1.22378 1.01808 0.95542 0.82564 1.22414 1.00917 0.97359 0.98465 1.22434 0.93766 0.86551 0.98504 1.86389 1.64466 1.41915 1.38601 1.21890 0.92757 0.94751 0.86165 0.95527 1.20768 0.91452 0.86256 0.98091 1.42422 1.04816 1.04489 1.86566 1.19692 0.92778 0.85852 1.39275 0.90429 1.25595 0.95299 1.02356 1.03672 1.69840 0.99705 1.33736 1.58723 0.85044 0.77877 0.79918 0.76736 1.18932 1.21934 1.22090 1.22347 0.95441 0.80273 1.05358 0.90508 0.87954 0.89215 0.81304 0.79814 0.82129 0.88678 0.88664 0.90078 0.86176 0.88341 0.93308 0.94797 0.94478 0.79416 0.94038 0.86867 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 9.98 127.77 1.28 2.26 16 2 N -0.48 -9.50 3.02 -660.61 -1.99 -11.50 16 3 C 0.50 11.07 7.43 85.00 0.63 11.71 16 4 O -0.59 -17.27 16.72 -5.19 -0.09 -17.35 16 5 C -0.23 -3.44 10.00 22.51 0.23 -3.22 16 6 C 0.00 0.02 10.08 22.30 0.22 0.25 16 7 C -0.18 -2.50 9.22 22.35 0.21 -2.29 16 8 C 0.11 2.15 4.44 40.45 0.18 2.33 16 9 C 0.55 12.75 5.16 86.80 0.45 13.20 16 10 O -0.55 -17.44 16.51 -3.86 -0.06 -17.51 16 11 N -0.59 -11.31 2.19 -821.34 -1.80 -13.11 16 12 C 0.10 1.19 6.07 86.38 0.52 1.71 16 13 C -0.15 -1.97 5.79 30.31 0.18 -1.80 16 14 C 0.06 1.32 6.38 71.50 0.46 1.77 16 15 O -0.39 -12.46 9.38 -117.81 -1.11 -13.56 16 16 C 0.10 3.39 2.68 31.21 0.08 3.47 16 17 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 18 C 0.16 6.52 5.92 86.38 0.51 7.03 16 19 N -0.74 -38.88 5.54 -343.43 -1.90 -40.78 16 20 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16 21 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 22 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 23 N -0.97 -60.25 13.06 21.65 0.28 -59.96 16 24 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 28 C 0.09 2.12 4.91 87.25 0.43 2.55 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.10 1.67 7.55 -2.39 -0.02 1.65 16 31 H 0.09 1.37 6.69 -2.38 -0.02 1.36 16 32 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 34 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 0.97 5.91 -2.39 -0.01 0.96 16 37 H 0.08 1.19 8.01 -2.39 -0.02 1.17 16 38 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 0.98 7.40 -2.38 -0.02 0.97 16 41 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.37 21.16 7.65 -92.71 -0.71 20.45 16 44 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 45 H 0.11 2.21 8.11 -2.39 -0.02 2.19 16 46 H 0.09 2.34 7.21 -2.39 -0.02 2.33 16 Total: -1.00 -80.69 376.67 2.33 -78.37 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.29 Total: 24.91 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 6.68 Total: 21.86 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -5.41 Total: -125.36 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -1.26 Total: -48.42 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -80.69 2.33 -78.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201380078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.123 kcal (2) G-P(sol) polarization free energy of solvation -80.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds