Wall clock time and date at job start Tue Mar 31 2020 18:16:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.34669 * 119.70333 * 2 1
4 4 O 1.21963 * 119.95851 * 359.97299 * 3 2 1
5 5 C 1.41243 * 120.08836 * 180.02562 * 3 2 1
6 6 C 1.36109 * 119.50650 * 359.97438 * 5 3 2
7 7 C 1.40412 * 119.41833 * 359.72984 * 6 5 3
8 8 C 1.36298 * 119.90171 * 0.56838 * 7 6 5
9 9 C 1.47878 * 119.75339 * 179.71117 * 8 7 6
10 10 O 1.21543 * 119.99556 * 265.39492 * 9 8 7
11 11 N 1.34775 * 120.00695 * 85.39971 * 9 8 7
12 12 C 1.47512 * 118.75148 * 5.20612 * 11 9 8
13 13 C 1.53576 * 111.02924 * 221.60342 * 12 11 9
14 14 C 1.51537 * 109.57732 * 39.98014 * 13 12 11
15 15 O 1.42148 * 108.75920 * 268.59924 * 14 13 12
16 16 C 1.38011 * 119.44201 * 87.22750 * 15 14 13
17 17 H 1.09005 * 109.46345 * 56.57064 * 16 15 14
18 18 C 1.52996 * 109.47344 * 176.56418 * 16 15 14
19 19 N 1.46491 * 109.47582 * 300.00896 * 18 16 15
20 20 C 1.36939 * 120.00062 * 179.97438 * 19 18 16
21 21 H 1.07994 * 120.00264 * 359.97438 * 20 19 18
22 22 C 1.38816 * 120.00061 * 179.97438 * 20 19 18
23 23 N 1.31617 * 119.99932 * 359.97438 * 22 20 19
24 24 Si 1.86801 * 120.00319 * 180.02562 * 22 20 19
25 25 H 1.48493 * 109.47136 * 89.99909 * 24 22 20
26 26 H 1.48498 * 109.47254 * 209.99985 * 24 22 20
27 27 H 1.48507 * 109.46796 * 330.00186 * 24 22 20
28 28 C 1.45114 * 118.76125 * 184.93881 * 11 9 8
29 29 H 1.09005 * 109.46800 * 274.83205 * 1 2 3
30 30 H 1.08998 * 109.46884 * 34.82239 * 1 2 3
31 31 H 1.08996 * 109.47481 * 154.82497 * 1 2 3
32 32 H 1.07996 * 120.24799 * 179.97438 * 5 3 2
33 33 H 1.08000 * 120.29098 * 180.02562 * 6 5 3
34 34 H 1.07994 * 120.04957 * 180.27328 * 7 6 5
35 35 H 1.08996 * 109.17161 * 342.00665 * 12 11 9
36 36 H 1.09009 * 109.16459 * 101.20868 * 12 11 9
37 37 H 1.08996 * 109.45149 * 160.01851 * 13 12 11
38 38 H 1.08999 * 109.45119 * 279.97230 * 13 12 11
39 39 H 1.08999 * 109.59019 * 28.38433 * 14 13 12
40 40 H 1.08999 * 109.58451 * 148.67032 * 14 13 12
41 41 H 1.09005 * 109.46872 * 60.00968 * 18 16 15
42 42 H 1.09004 * 109.47121 * 180.02562 * 18 16 15
43 43 H 0.96998 * 120.00047 * 359.97438 * 19 18 16
44 44 H 0.97006 * 120.00309 * 179.97438 * 23 22 20
45 45 H 1.09001 * 109.46004 * 210.75504 * 28 11 9
46 46 H 1.09002 * 109.46418 * 330.72066 * 28 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1323 1.1697 0.0000
4 8 1.5163 2.2223 -0.0005
5 6 3.5447 1.1792 -0.0005
6 6 4.2231 -0.0008 -0.0005
7 6 3.5064 -1.2082 0.0058
8 6 2.1436 -1.1895 0.0001
9 6 1.3921 -2.4632 0.0003
10 8 1.0149 -2.9463 -1.0492
11 7 1.1255 -3.0882 1.1642
12 6 1.4929 -2.4219 2.4279
13 6 2.0966 -3.4231 3.4237
14 6 3.0064 -4.3856 2.6874
15 8 2.2470 -5.5200 2.2911
16 6 1.5701 -5.4969 1.0887
17 1 2.2719 -5.2904 0.2806
18 6 0.9048 -6.8541 0.8518
19 7 1.9292 -7.9006 0.8154
20 6 1.5677 -9.2060 0.6146
21 1 0.5274 -9.4642 0.4834
22 6 2.5386 -10.1976 0.5796
23 7 3.8066 -9.8829 0.7390
24 14 2.0456 -11.9783 0.3049
25 1 2.0460 -12.2731 -1.1505
26 1 3.0134 -12.8714 0.9911
27 1 0.6854 -12.2059 0.8558
28 6 0.4825 -4.3886 1.1270
29 1 -0.3633 0.0866 1.0241
30 1 -0.3633 0.8436 -0.5868
31 1 -0.3634 -0.9300 -0.4371
32 1 4.0825 2.1158 -0.0010
33 1 5.3030 -0.0083 -0.0005
34 1 4.0343 -2.1504 0.0103
35 1 2.2224 -1.6390 2.2208
36 1 0.6023 -1.9726 2.8676
37 1 2.6714 -2.8842 4.1768
38 1 1.2953 -3.9806 3.9087
39 1 3.4193 -3.8960 1.8054
40 1 3.8174 -4.6976 3.3454
41 1 0.2029 -7.0607 1.6598
42 1 0.3705 -6.8360 -0.0982
43 1 2.8637 -7.6688 0.9336
44 1 4.4851 -10.5759 0.7149
45 1 -0.1340 -4.5145 2.0171
46 1 -0.1446 -4.4585 0.2382
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001201380079.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:16:30
Heat of formation + Delta-G solvation = -44.908150 kcal
Electronic energy + Delta-G solvation = -30004.282553 eV
Core-core repulsion = 25895.881456 eV
Total energy + Delta-G solvation = -4108.401098 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-42.05138 -40.50950 -38.74580 -37.10668 -35.90720 -35.03721 -34.69638 -32.99581
-31.11714 -30.85739 -28.89487 -28.07592 -26.93702 -25.83457 -24.49038 -23.09722
-22.74186 -21.89995 -21.05246 -20.03063 -18.38960 -17.79166 -17.48003 -17.18481
-17.01351 -16.59160 -16.20589 -15.99879 -15.71132 -15.06779 -14.94052 -14.86141
-14.35964 -14.06746 -13.82082 -13.57180 -13.28416 -13.17526 -13.07478 -12.94051
-12.73527 -12.46854 -12.42682 -12.25697 -12.14330 -11.76514 -11.48218 -11.14308
-10.89198 -10.79881 -10.73091 -10.53180 -10.38366 -10.17077 -10.02411 -9.71308
-9.57413 -8.87416 -8.83648 -8.43535 -6.88387 -5.72519 -3.00927 0.21889
1.35450 1.63722 2.23611 2.57651 3.17420 3.45995 3.50777 3.52582
3.59340 3.84018 4.16048 4.39801 4.45426 4.51890 4.61541 4.68937
4.77376 4.80205 4.82818 4.94380 5.02430 5.07086 5.19052 5.21009
5.30490 5.34532 5.42936 5.46779 5.56943 5.60229 5.68216 5.78893
5.80422 5.85409 5.94712 5.97981 6.18532 6.27460 6.55701 6.58088
6.69924 6.74095 7.50918 7.58543 7.71852 7.88556 8.45724 9.57531
10.14913 10.50815 11.50294
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.022420 B = 0.002647 C = 0.002631
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1248.583355 B =10575.872104 C =10640.024612
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.055 3.945
2 N -0.485 5.485
3 C 0.516 3.484
4 O -0.547 6.547
5 C -0.227 4.227
6 C -0.017 4.017
7 C -0.189 4.189
8 C 0.131 3.869
9 C 0.550 3.450
10 O -0.503 6.503
11 N -0.591 5.591
12 C 0.101 3.899
13 C -0.165 4.165
14 C 0.073 3.927
15 O -0.364 6.364
16 C 0.090 3.910
17 H 0.052 0.948
18 C 0.166 3.834
19 N -0.725 5.725
20 C -0.238 4.238
21 H 0.070 0.930
22 C -0.014 4.014
23 N -0.932 5.932
24 Si 0.907 3.093
25 H -0.290 1.290
26 H -0.292 1.292
27 H -0.282 1.282
28 C 0.076 3.924
29 H 0.079 0.921
30 H 0.098 0.902
31 H 0.087 0.913
32 H 0.154 0.846
33 H 0.145 0.855
34 H 0.151 0.849
35 H 0.082 0.918
36 H 0.072 0.928
37 H 0.088 0.912
38 H 0.085 0.915
39 H 0.046 0.954
40 H 0.093 0.907
41 H 0.027 0.973
42 H 0.035 0.965
43 H 0.388 0.612
44 H 0.254 0.746
45 H 0.091 0.909
46 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.823 22.717 4.298 23.192
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.087 4.087
2 N -0.198 5.198
3 C 0.317 3.683
4 O -0.429 6.429
5 C -0.249 4.249
6 C -0.039 4.039
7 C -0.213 4.213
8 C 0.021 3.979
9 C 0.334 3.666
10 O -0.377 6.377
11 N -0.324 5.324
12 C -0.021 4.021
13 C -0.203 4.203
14 C -0.004 4.004
15 O -0.282 6.282
16 C 0.029 3.971
17 H 0.070 0.930
18 C 0.038 3.962
19 N -0.370 5.370
20 C -0.370 4.370
21 H 0.088 0.912
22 C -0.210 4.210
23 N -0.580 5.580
24 Si 0.738 3.262
25 H -0.218 1.218
26 H -0.218 1.218
27 H -0.208 1.208
28 C -0.047 4.047
29 H 0.098 0.902
30 H 0.116 0.884
31 H 0.106 0.894
32 H 0.171 0.829
33 H 0.163 0.837
34 H 0.169 0.831
35 H 0.100 0.900
36 H 0.090 0.910
37 H 0.106 0.894
38 H 0.104 0.896
39 H 0.064 0.936
40 H 0.111 0.889
41 H 0.045 0.955
42 H 0.053 0.947
43 H 0.221 0.779
44 H 0.064 0.936
45 H 0.110 0.890
46 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -2.627 22.815 3.843 23.285
hybrid contribution 0.212 -0.638 -0.239 0.714
sum -2.415 22.177 3.604 22.597
Atomic orbital electron populations
1.22252 0.76795 1.05353 1.04265 1.45523 1.09265 1.05359 1.59693
1.17324 0.89341 0.82289 0.79312 1.90950 1.69979 1.29048 1.52946
1.22345 0.92445 1.00357 1.09767 1.21418 1.01171 0.91155 0.90119
1.20805 0.90594 1.00576 1.09285 1.20324 0.93289 0.85970 0.98339
1.18124 0.79899 0.83794 0.84788 1.90926 1.50059 1.66039 1.30653
1.47976 1.59037 1.19871 1.05520 1.22119 1.00540 0.95482 0.83990
1.22502 1.01452 0.98078 0.98305 1.22138 0.93261 0.86950 0.98066
1.86468 1.64456 1.38979 1.38323 1.22382 0.92488 0.95728 0.86455
0.92984 1.20615 0.92373 0.85106 0.98143 1.42193 1.05084 1.02497
1.87179 1.19220 0.92845 0.83730 1.41170 0.91181 1.24734 0.95315
0.97996 1.02923 1.69673 0.99197 1.32164 1.57007 0.86186 0.77272
0.85055 0.77648 1.21763 1.21803 1.20778 1.22739 0.96717 0.80489
1.04705 0.90216 0.88356 0.89446 0.82861 0.83743 0.83097 0.89958
0.90954 0.89356 0.89603 0.93564 0.88912 0.95479 0.94727 0.77850
0.93585 0.89036 0.88268
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.48 9.98 59.85 0.60 1.08 16
2 N -0.48 -4.96 3.02 -122.80 -0.37 -5.34 16
3 C 0.52 5.91 7.43 -15.17 -0.11 5.79 16
4 O -0.55 -7.99 16.72 4.95 0.08 -7.91 16
5 C -0.23 -1.95 10.00 -39.21 -0.39 -2.34 16
6 C -0.02 -0.12 10.08 -39.53 -0.40 -0.52 16
7 C -0.19 -1.57 9.24 -39.46 -0.36 -1.94 16
8 C 0.13 1.32 4.43 -82.34 -0.36 0.95 16
9 C 0.55 6.49 5.29 -12.32 -0.07 6.43 16
10 O -0.50 -7.80 16.26 5.33 0.09 -7.71 16
11 N -0.59 -6.15 2.18 -173.23 -0.38 -6.53 16
12 C 0.10 0.77 6.07 -3.19 -0.02 0.75 16
13 C -0.17 -1.34 5.79 -27.17 -0.16 -1.50 16
14 C 0.07 0.83 6.37 36.42 0.23 1.06 16
15 O -0.36 -5.88 9.18 -26.52 -0.24 -6.12 16
16 C 0.09 1.44 2.74 -25.50 -0.07 1.37 16
17 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16
18 C 0.17 3.32 5.95 -4.05 -0.02 3.29 16
19 N -0.73 -18.67 5.49 -59.91 -0.33 -18.99 16
20 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16
21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16
22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16
23 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16
24 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16
25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
28 C 0.08 0.94 4.95 -3.55 -0.02 0.92 16
29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
30 H 0.10 0.88 7.54 -51.93 -0.39 0.49 16
31 H 0.09 0.79 6.52 -51.93 -0.34 0.45 16
32 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16
33 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16
34 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16
35 H 0.08 0.57 5.92 -51.93 -0.31 0.26 16
36 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16
37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16
38 H 0.09 0.78 8.01 -51.93 -0.42 0.36 16
39 H 0.05 0.50 7.40 -51.93 -0.38 0.12 16
40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16
41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16
42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
43 H 0.39 10.62 7.53 -40.82 -0.31 10.31 16
44 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16
45 H 0.09 0.99 8.11 -51.93 -0.42 0.57 16
46 H 0.10 1.28 7.21 -51.93 -0.37 0.91 16
LS Contribution 376.17 15.07 5.67 5.67
Total: -1.00 -35.96 376.17 -7.90 -43.86
By element:
Atomic # 1 Polarization: 12.00 SS G_CDS: -6.72 Total: 5.29 kcal
Atomic # 6 Polarization: 9.37 SS G_CDS: -1.40 Total: 7.97 kcal
Atomic # 7 Polarization: -58.20 SS G_CDS: -0.35 Total: -58.55 kcal
Atomic # 8 Polarization: -21.66 SS G_CDS: -0.07 Total: -21.74 kcal
Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -35.96 -7.90 -43.86 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001201380079.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.044 kcal
(2) G-P(sol) polarization free energy of solvation -35.964 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.009 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.864 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.908 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds