Wall clock time and date at job start Tue Mar 31 2020 18:16:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.34669 * 119.70333 * 2 1
4 4 O 1.21963 * 119.95851 * 359.97299 * 3 2 1
5 5 C 1.41243 * 120.08836 * 180.02562 * 3 2 1
6 6 C 1.36109 * 119.50650 * 359.97438 * 5 3 2
7 7 C 1.40412 * 119.41833 * 359.72984 * 6 5 3
8 8 C 1.36298 * 119.90171 * 0.56838 * 7 6 5
9 9 C 1.47878 * 119.75339 * 179.71117 * 8 7 6
10 10 O 1.21543 * 119.99556 * 265.39492 * 9 8 7
11 11 N 1.34775 * 120.00695 * 85.39971 * 9 8 7
12 12 C 1.47512 * 118.75148 * 5.20612 * 11 9 8
13 13 C 1.53576 * 111.02924 * 221.60342 * 12 11 9
14 14 C 1.51537 * 109.57732 * 39.98014 * 13 12 11
15 15 O 1.42148 * 108.75920 * 268.59924 * 14 13 12
16 16 C 1.38011 * 119.44201 * 87.22750 * 15 14 13
17 17 H 1.09005 * 109.46345 * 56.57064 * 16 15 14
18 18 C 1.52996 * 109.47344 * 176.56418 * 16 15 14
19 19 N 1.46491 * 109.47582 * 300.00896 * 18 16 15
20 20 C 1.36939 * 120.00062 * 179.97438 * 19 18 16
21 21 H 1.07994 * 120.00264 * 359.97438 * 20 19 18
22 22 C 1.38816 * 120.00061 * 179.97438 * 20 19 18
23 23 N 1.31617 * 119.99932 * 359.97438 * 22 20 19
24 24 Si 1.86801 * 120.00319 * 180.02562 * 22 20 19
25 25 H 1.48493 * 109.47136 * 89.99909 * 24 22 20
26 26 H 1.48498 * 109.47254 * 209.99985 * 24 22 20
27 27 H 1.48507 * 109.46796 * 330.00186 * 24 22 20
28 28 C 1.45114 * 118.76125 * 184.93881 * 11 9 8
29 29 H 1.09005 * 109.46800 * 274.83205 * 1 2 3
30 30 H 1.08998 * 109.46884 * 34.82239 * 1 2 3
31 31 H 1.08996 * 109.47481 * 154.82497 * 1 2 3
32 32 H 1.07996 * 120.24799 * 179.97438 * 5 3 2
33 33 H 1.08000 * 120.29098 * 180.02562 * 6 5 3
34 34 H 1.07994 * 120.04957 * 180.27328 * 7 6 5
35 35 H 1.08996 * 109.17161 * 342.00665 * 12 11 9
36 36 H 1.09009 * 109.16459 * 101.20868 * 12 11 9
37 37 H 1.08996 * 109.45149 * 160.01851 * 13 12 11
38 38 H 1.08999 * 109.45119 * 279.97230 * 13 12 11
39 39 H 1.08999 * 109.59019 * 28.38433 * 14 13 12
40 40 H 1.08999 * 109.58451 * 148.67032 * 14 13 12
41 41 H 1.09005 * 109.46872 * 60.00968 * 18 16 15
42 42 H 1.09004 * 109.47121 * 180.02562 * 18 16 15
43 43 H 0.96998 * 120.00047 * 359.97438 * 19 18 16
44 44 H 0.97006 * 120.00309 * 179.97438 * 23 22 20
45 45 H 1.09001 * 109.46004 * 210.75504 * 28 11 9
46 46 H 1.09002 * 109.46418 * 330.72066 * 28 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1323 1.1697 0.0000
4 8 1.5163 2.2223 -0.0005
5 6 3.5447 1.1792 -0.0005
6 6 4.2231 -0.0008 -0.0005
7 6 3.5064 -1.2082 0.0058
8 6 2.1436 -1.1895 0.0001
9 6 1.3921 -2.4632 0.0003
10 8 1.0149 -2.9463 -1.0492
11 7 1.1255 -3.0882 1.1642
12 6 1.4929 -2.4219 2.4279
13 6 2.0966 -3.4231 3.4237
14 6 3.0064 -4.3856 2.6874
15 8 2.2470 -5.5200 2.2911
16 6 1.5701 -5.4969 1.0887
17 1 2.2719 -5.2904 0.2806
18 6 0.9048 -6.8541 0.8518
19 7 1.9292 -7.9006 0.8154
20 6 1.5677 -9.2060 0.6146
21 1 0.5274 -9.4642 0.4834
22 6 2.5386 -10.1976 0.5796
23 7 3.8066 -9.8829 0.7390
24 14 2.0456 -11.9783 0.3049
25 1 2.0460 -12.2731 -1.1505
26 1 3.0134 -12.8714 0.9911
27 1 0.6854 -12.2059 0.8558
28 6 0.4825 -4.3886 1.1270
29 1 -0.3633 0.0866 1.0241
30 1 -0.3633 0.8436 -0.5868
31 1 -0.3634 -0.9300 -0.4371
32 1 4.0825 2.1158 -0.0010
33 1 5.3030 -0.0083 -0.0005
34 1 4.0343 -2.1504 0.0103
35 1 2.2224 -1.6390 2.2208
36 1 0.6023 -1.9726 2.8676
37 1 2.6714 -2.8842 4.1768
38 1 1.2953 -3.9806 3.9087
39 1 3.4193 -3.8960 1.8054
40 1 3.8174 -4.6976 3.3454
41 1 0.2029 -7.0607 1.6598
42 1 0.3705 -6.8360 -0.0982
43 1 2.8637 -7.6688 0.9336
44 1 4.4851 -10.5759 0.7149
45 1 -0.1340 -4.5145 2.0171
46 1 -0.1446 -4.4585 0.2382
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001201380079.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:16:29
Heat of formation + Delta-G solvation = -70.095579 kcal
Electronic energy + Delta-G solvation = -30005.374762 eV
Core-core repulsion = 25895.881456 eV
Total energy + Delta-G solvation = -4109.493306 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.85868 -41.44865 -39.83025 -37.97718 -37.01529 -36.30496 -35.71889 -34.35320
-32.68750 -31.82274 -30.16185 -28.78111 -28.02237 -26.92901 -25.76815 -24.32081
-23.77684 -22.91585 -22.31470 -20.88780 -19.29347 -19.16792 -18.55179 -18.22988
-17.99075 -17.67461 -17.10643 -17.01067 -16.68507 -16.44383 -15.89470 -15.79861
-15.65480 -15.15515 -14.95185 -14.78586 -14.65994 -14.35517 -13.98627 -13.84684
-13.73987 -13.55524 -13.32668 -13.22567 -13.11690 -12.92904 -12.76491 -12.63380
-12.33996 -12.17712 -12.05311 -11.82879 -11.65510 -11.47079 -11.18326 -11.04728
-10.95788 -10.60281 -9.87190 -9.20639 -8.98355 -7.92419 -5.21369 -0.47512
0.62108 0.77449 1.38008 1.48642 1.50830 1.59131 1.77828 2.45013
2.57505 2.71656 2.83179 3.41344 3.46119 3.56608 3.74674 3.86443
3.92678 3.99822 4.03522 4.05422 4.14226 4.17719 4.21874 4.29298
4.37574 4.43266 4.51009 4.52611 4.63485 4.68055 4.77095 4.80434
4.90052 4.94236 5.06743 5.10518 5.14821 5.16575 5.31557 5.34504
5.49969 5.80130 5.88367 6.28633 6.60636 6.75926 6.78595 7.35472
8.10401 8.34763 9.31300
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.022420 B = 0.002647 C = 0.002631
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1248.583355 B =10575.872104 C =10640.024612
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.053 3.947
2 N -0.484 5.484
3 C 0.504 3.496
4 O -0.591 6.591
5 C -0.233 4.233
6 C 0.002 3.998
7 C -0.176 4.176
8 C 0.115 3.885
9 C 0.554 3.446
10 O -0.548 6.548
11 N -0.584 5.584
12 C 0.098 3.902
13 C -0.154 4.154
14 C 0.063 3.937
15 O -0.394 6.394
16 C 0.105 3.895
17 H 0.028 0.972
18 C 0.161 3.839
19 N -0.740 5.740
20 C -0.246 4.246
21 H 0.077 0.923
22 C -0.076 4.076
23 N -0.969 5.969
24 Si 0.975 3.025
25 H -0.288 1.288
26 H -0.295 1.295
27 H -0.268 1.268
28 C 0.090 3.910
29 H 0.098 0.902
30 H 0.091 0.909
31 H 0.082 0.918
32 H 0.169 0.831
33 H 0.184 0.816
34 H 0.161 0.839
35 H 0.095 0.905
36 H 0.095 0.905
37 H 0.120 0.880
38 H 0.080 0.920
39 H 0.049 0.951
40 H 0.098 0.902
41 H 0.033 0.967
42 H 0.036 0.964
43 H 0.375 0.625
44 H 0.251 0.749
45 H 0.112 0.888
46 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.546 23.636 5.517 24.321
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.088 4.088
2 N -0.196 5.196
3 C 0.307 3.693
4 O -0.477 6.477
5 C -0.254 4.254
6 C -0.019 4.019
7 C -0.200 4.200
8 C 0.005 3.995
9 C 0.339 3.661
10 O -0.425 6.425
11 N -0.316 5.316
12 C -0.022 4.022
13 C -0.192 4.192
14 C -0.012 4.012
15 O -0.313 6.313
16 C 0.044 3.956
17 H 0.046 0.954
18 C 0.034 3.966
19 N -0.382 5.382
20 C -0.378 4.378
21 H 0.095 0.905
22 C -0.269 4.269
23 N -0.620 5.620
24 Si 0.804 3.196
25 H -0.215 1.215
26 H -0.221 1.221
27 H -0.193 1.193
28 C -0.034 4.034
29 H 0.117 0.883
30 H 0.110 0.890
31 H 0.100 0.900
32 H 0.187 0.813
33 H 0.202 0.798
34 H 0.179 0.821
35 H 0.113 0.887
36 H 0.113 0.887
37 H 0.138 0.862
38 H 0.098 0.902
39 H 0.067 0.933
40 H 0.116 0.884
41 H 0.051 0.949
42 H 0.054 0.946
43 H 0.207 0.793
44 H 0.060 0.940
45 H 0.130 0.870
46 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -2.379 23.750 5.095 24.407
hybrid contribution 0.168 -0.904 -0.589 1.092
sum -2.212 22.846 4.506 23.391
Atomic orbital electron populations
1.22304 0.76435 1.04709 1.05320 1.45513 1.09682 1.05204 1.59247
1.17799 0.90428 0.81872 0.79157 1.90925 1.70916 1.30343 1.55504
1.22506 0.91089 1.01863 1.09980 1.21744 1.02870 0.89495 0.87811
1.21128 0.89986 1.01810 1.07075 1.20161 0.93712 0.84982 1.00662
1.18360 0.79232 0.84149 0.84348 1.90903 1.51919 1.67401 1.32283
1.48007 1.58194 1.18969 1.06390 1.22370 1.01967 0.95365 0.82524
1.22414 1.00896 0.97412 0.98454 1.22419 0.93793 0.86420 0.98604
1.86392 1.65243 1.41849 1.37810 1.21991 0.92887 0.94696 0.85993
0.95436 1.20773 0.91613 0.86005 0.98208 1.42392 1.05605 1.03072
1.87140 1.19659 0.93194 0.85048 1.39852 0.90482 1.25590 0.95368
1.02276 1.03623 1.69835 1.00192 1.33183 1.58751 0.85115 0.77328
0.79778 0.77376 1.21478 1.22108 1.19307 1.22448 0.95364 0.80263
1.05318 0.88316 0.89042 0.89973 0.81342 0.79845 0.82122 0.88673
0.88701 0.86214 0.90155 0.93260 0.88421 0.94870 0.94589 0.79313
0.94038 0.86990 0.89076
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.91 9.98 127.77 1.28 2.19 16
2 N -0.48 -9.40 3.02 -660.60 -1.99 -11.39 16
3 C 0.50 11.02 7.43 85.00 0.63 11.65 16
4 O -0.59 -17.24 16.72 -5.19 -0.09 -17.33 16
5 C -0.23 -3.44 10.00 22.51 0.23 -3.21 16
6 C 0.00 0.02 10.08 22.30 0.22 0.24 16
7 C -0.18 -2.48 9.24 22.35 0.21 -2.27 16
8 C 0.11 2.13 4.43 40.45 0.18 2.31 16
9 C 0.55 12.65 5.29 86.80 0.46 13.11 16
10 O -0.55 -17.23 16.26 -3.85 -0.06 -17.30 16
11 N -0.58 -11.27 2.18 -820.27 -1.79 -13.05 16
12 C 0.10 1.21 6.07 86.38 0.52 1.73 16
13 C -0.15 -2.02 5.79 30.31 0.18 -1.85 16
14 C 0.06 1.34 6.37 71.50 0.46 1.80 16
15 O -0.39 -12.57 9.18 -117.82 -1.08 -13.65 16
16 C 0.10 3.39 2.74 31.39 0.09 3.47 16
17 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16
18 C 0.16 6.51 5.95 86.38 0.51 7.03 16
19 N -0.74 -38.83 5.49 -343.47 -1.88 -40.71 16
20 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16
21 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16
22 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16
23 N -0.97 -60.19 13.06 21.65 0.28 -59.90 16
24 Si 0.98 46.57 29.55 68.60 2.03 48.60 16
25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16
26 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16
27 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16
28 C 0.09 2.13 4.95 87.44 0.43 2.56 16
29 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16
30 H 0.09 1.68 7.54 -2.39 -0.02 1.66 16
31 H 0.08 1.48 6.52 -2.39 -0.02 1.47 16
32 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16
33 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16
34 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16
35 H 0.10 0.98 5.92 -2.39 -0.01 0.96 16
36 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16
37 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16
38 H 0.08 1.22 8.01 -2.39 -0.02 1.20 16
39 H 0.05 1.00 7.40 -2.39 -0.02 0.98 16
40 H 0.10 1.94 8.14 -2.39 -0.02 1.93 16
41 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16
42 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16
43 H 0.38 21.20 7.53 -92.71 -0.70 20.50 16
44 H 0.25 15.03 8.31 -92.70 -0.77 14.26 16
45 H 0.11 2.21 8.11 -2.39 -0.02 2.19 16
46 H 0.09 2.35 7.21 -2.39 -0.02 2.33 16
Total: -1.00 -80.48 376.17 2.41 -78.07
By element:
Atomic # 1 Polarization: 24.76 SS G_CDS: 0.30 Total: 25.06 kcal
Atomic # 6 Polarization: 14.90 SS G_CDS: 6.70 Total: 21.60 kcal
Atomic # 7 Polarization: -119.68 SS G_CDS: -5.38 Total: -125.06 kcal
Atomic # 8 Polarization: -47.04 SS G_CDS: -1.23 Total: -48.27 kcal
Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal
Total: -80.48 2.41 -78.07 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001201380079.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.975 kcal
(2) G-P(sol) polarization free energy of solvation -80.482 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.507 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.071 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.096 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds