Wall clock time and date at job start Tue Mar 31 2020 19:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35666 * 116.99731 * 2 1 4 4 C 1.39284 * 119.61578 * 179.97438 * 3 2 1 5 5 C 1.38330 * 119.30509 * 180.02562 * 4 3 2 6 6 C 1.38779 * 118.55908 * 359.73313 * 5 4 3 7 7 C 1.39128 * 119.18839 * 0.52752 * 6 5 4 8 8 C 1.48146 * 119.69163 * 179.72681 * 7 6 5 9 9 O 1.21522 * 120.00158 * 10.84854 * 8 7 6 10 10 N 1.34778 * 120.00488 * 190.84451 * 8 7 6 11 11 C 1.47516 * 118.75074 * 2.96665 * 10 8 7 12 12 C 1.53564 * 111.02561 * 138.34738 * 11 10 8 13 13 C 1.51532 * 109.58428 * 320.01957 * 12 11 10 14 14 O 1.42153 * 108.75405 * 91.39955 * 13 12 11 15 15 C 1.38010 * 119.44462 * 272.77357 * 14 13 12 16 16 H 1.08998 * 109.46911 * 303.42288 * 15 14 13 17 17 C 1.52998 * 109.47351 * 183.43051 * 15 14 13 18 18 N 1.46500 * 109.47249 * 64.98972 * 17 15 14 19 19 C 1.36938 * 120.00116 * 179.73035 * 18 17 15 20 20 H 1.07997 * 120.00374 * 0.27284 * 19 18 17 21 21 C 1.38819 * 119.99787 * 180.27528 * 19 18 17 22 22 N 1.31612 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99811 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47109 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46911 * 119.99908 * 23 21 19 26 26 H 1.48491 * 109.46930 * 240.00078 * 23 21 19 27 27 C 1.45111 * 118.76206 * 182.94598 * 10 8 7 28 28 N 1.31899 * 119.62000 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47340 * 300.00134 * 1 2 3 30 30 H 1.09000 * 109.47077 * 60.00795 * 1 2 3 31 31 H 1.09007 * 109.46780 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.34761 * 0.04854 * 4 3 2 33 33 H 1.08000 * 120.71891 * 180.02562 * 5 4 3 34 34 H 1.08009 * 120.40830 * 180.28282 * 6 5 4 35 35 H 1.08999 * 109.16617 * 258.74339 * 11 10 8 36 36 H 1.08998 * 109.16498 * 17.94562 * 11 10 8 37 37 H 1.09000 * 109.45760 * 80.05618 * 12 11 10 38 38 H 1.09006 * 109.45410 * 199.98895 * 12 11 10 39 39 H 1.09001 * 109.59746 * 211.18636 * 13 12 11 40 40 H 1.09002 * 109.58831 * 331.62606 * 13 12 11 41 41 H 1.09006 * 109.46881 * 304.99540 * 17 15 14 42 42 H 1.08999 * 109.47562 * 184.98998 * 17 15 14 43 43 H 0.97002 * 119.99706 * 0.02562 * 18 17 15 44 44 H 0.97004 * 120.00068 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.46151 * 149.28339 * 27 10 8 46 46 H 1.09003 * 109.45960 * 29.32578 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4363 1.2725 0.0005 5 6 4.0575 2.5084 0.0011 6 6 3.2664 3.6486 -0.0046 7 6 1.8817 3.5137 0.0005 8 6 1.0266 4.7234 0.0007 9 8 1.5191 5.8158 -0.2017 10 7 -0.2978 4.6126 0.2251 11 6 -0.8564 3.2825 0.5331 12 6 -1.8984 3.3695 1.6578 13 6 -1.4239 4.3454 2.7154 14 8 -1.9254 5.6382 2.4023 15 6 -1.2064 6.4583 1.5566 16 1 -0.2014 6.5989 1.9545 17 6 -1.9052 7.8149 1.4457 18 7 -1.8811 8.4846 2.7484 19 6 -2.4464 9.7236 2.8919 20 1 -2.9139 10.2052 2.0458 21 6 -2.4184 10.3606 4.1250 22 7 -1.8483 9.7740 5.1560 23 14 -3.1889 12.0511 4.3205 24 1 -3.7595 12.4884 3.0211 25 1 -4.2683 11.9883 5.3386 26 1 -2.1520 13.0200 4.7575 27 6 -1.1201 5.8062 0.1552 28 7 1.3191 2.3102 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 4.0239 0.3663 0.0002 33 1 5.1348 2.5843 0.0011 34 1 3.7201 4.6288 -0.0090 35 1 -1.3286 2.8768 -0.3616 36 1 -0.0495 2.6186 0.8432 37 1 -2.8480 3.7125 1.2472 38 1 -2.0316 2.3849 2.1061 39 1 -1.7960 4.0357 3.6920 40 1 -0.3342 4.3694 2.7280 41 1 -2.9387 7.6666 1.1325 42 1 -1.3876 8.4312 0.7107 43 1 -1.4609 8.0522 3.5083 44 1 -1.8291 10.2190 6.0177 45 1 -2.1210 5.5383 -0.1829 46 1 -0.6766 6.5121 -0.5471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201774422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:41 Heat of formation + Delta-G solvation = -29.050295 kcal Electronic energy + Delta-G solvation = -29866.365270 eV Core-core repulsion = 25758.651821 eV Total energy + Delta-G solvation = -4107.713449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.52059 -40.16254 -38.70564 -37.84074 -35.72249 -34.57153 -33.17675 -32.74900 -31.26907 -30.86363 -28.91411 -27.79041 -26.66162 -25.57229 -24.25949 -23.36293 -22.57414 -21.60532 -20.92100 -20.26808 -18.32938 -17.93828 -17.12607 -16.67615 -16.54887 -16.47461 -16.35369 -16.15506 -15.67153 -14.96300 -14.82546 -14.49775 -14.32921 -14.06272 -13.88695 -13.59301 -13.45829 -13.07140 -12.93428 -12.66219 -12.49602 -12.28465 -12.15739 -12.04898 -11.71147 -11.55008 -11.42521 -10.94792 -10.78777 -10.75764 -10.55992 -10.32026 -10.14683 -9.93312 -9.65498 -9.35260 -9.32024 -9.00280 -8.79552 -8.48332 -6.80430 -5.65642 -2.93608 0.26746 0.79825 2.50282 2.58847 2.78469 3.42698 3.50321 3.55218 3.57955 3.62062 4.02055 4.28062 4.50082 4.56888 4.66096 4.76898 4.79439 4.84756 4.87589 4.95953 5.00575 5.17476 5.23385 5.30006 5.33028 5.46323 5.52411 5.59886 5.66904 5.70352 5.72265 5.84252 5.88281 5.95555 6.03130 6.06608 6.19177 6.37966 6.51772 6.70886 6.75912 6.83890 7.09993 7.25179 7.78939 7.98866 8.06245 8.52569 9.64083 10.22745 10.58689 11.57437 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.002700 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.430010 B =10369.403109 C =10976.708221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.312 3.688 4 C -0.167 4.167 5 C -0.044 4.044 6 C -0.144 4.144 7 C 0.121 3.879 8 C 0.558 3.442 9 O -0.521 6.521 10 N -0.585 5.585 11 C 0.076 3.924 12 C -0.170 4.170 13 C 0.075 3.925 14 O -0.368 6.368 15 C 0.089 3.911 16 H 0.053 0.947 17 C 0.166 3.834 18 N -0.726 5.726 19 C -0.235 4.235 20 H 0.071 0.929 21 C -0.016 4.016 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.078 3.922 28 N -0.507 5.507 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.061 0.939 36 H 0.140 0.860 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.027 0.973 42 H 0.035 0.965 43 H 0.387 0.613 44 H 0.253 0.747 45 H 0.085 0.915 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.995 -24.922 -12.512 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.211 6.211 3 C 0.132 3.868 4 C -0.188 4.188 5 C -0.069 4.069 6 C -0.166 4.166 7 C -0.014 4.014 8 C 0.344 3.656 9 O -0.396 6.396 10 N -0.316 5.316 11 C -0.045 4.045 12 C -0.208 4.208 13 C -0.002 4.002 14 O -0.286 6.286 15 C 0.029 3.971 16 H 0.071 0.929 17 C 0.038 3.962 18 N -0.370 5.370 19 C -0.366 4.366 20 H 0.089 0.911 21 C -0.212 4.212 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.045 4.045 28 N -0.235 5.235 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.080 0.920 36 H 0.156 0.844 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.045 0.955 42 H 0.053 0.947 43 H 0.220 0.780 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.153 -24.438 -12.612 28.683 hybrid contribution 0.445 0.661 0.287 0.847 sum 8.598 -23.777 -12.324 28.127 Atomic orbital electron populations 1.23053 0.76912 1.03533 1.02689 1.86267 1.23123 1.23955 1.87778 1.20025 0.89627 0.84741 0.92397 1.21310 0.91963 0.99949 1.05590 1.21498 1.01093 0.90720 0.93627 1.22026 0.92847 1.01139 1.00555 1.20869 0.92425 0.90144 0.97969 1.18015 0.82244 0.87251 0.78083 1.90842 1.73104 1.26429 1.49242 1.47805 1.06721 1.09516 1.67592 1.23259 0.99660 0.83704 0.97913 1.22570 1.00044 1.00774 0.97436 1.22092 0.97917 0.82877 0.97316 1.86426 1.50323 1.25908 1.65965 1.22265 0.96018 0.90870 0.87927 0.92947 1.20610 0.97216 0.87746 0.90608 1.42239 1.69648 1.18837 1.06313 1.19282 1.28984 0.93280 0.95090 0.91118 1.24739 1.01712 0.98820 0.95895 1.69689 1.49510 1.38326 1.00611 0.86109 0.78442 0.84204 0.77411 1.20573 1.21954 1.21953 1.22528 0.95389 0.86630 0.99998 1.67520 1.38452 0.98471 1.19050 0.91949 0.91966 0.88256 0.83527 0.83101 0.82906 0.92045 0.84427 0.90404 0.90107 0.89431 0.93787 0.95471 0.94722 0.77958 0.93693 0.89629 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.25 101.05 1.04 1.23 16 2 O -0.30 -2.50 10.48 -18.70 -0.20 -2.69 16 3 C 0.31 2.83 7.49 -17.13 -0.13 2.70 16 4 C -0.17 -1.20 10.05 -39.16 -0.39 -1.60 16 5 C -0.04 -0.30 10.16 -39.35 -0.40 -0.70 16 6 C -0.14 -1.42 9.62 -39.05 -0.38 -1.80 16 7 C 0.12 1.44 6.53 -83.03 -0.54 0.90 16 8 C 0.56 8.21 7.60 -12.19 -0.09 8.12 16 9 O -0.52 -9.23 15.83 5.35 0.08 -9.15 16 10 N -0.59 -8.05 2.19 -173.48 -0.38 -8.43 16 11 C 0.08 0.83 5.29 -3.19 -0.02 0.81 16 12 C -0.17 -1.85 5.78 -27.18 -0.16 -2.01 16 13 C 0.07 1.07 6.38 36.42 0.23 1.31 16 14 O -0.37 -6.87 9.38 -26.52 -0.25 -7.12 16 15 C 0.09 1.67 2.68 -25.78 -0.07 1.60 16 16 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 17 C 0.17 3.65 5.92 -4.04 -0.02 3.62 16 18 N -0.73 -19.87 5.54 -59.91 -0.33 -20.20 16 19 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 20 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 21 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 22 N -0.93 -29.47 13.06 55.49 0.72 -28.75 16 23 Si 0.91 23.23 29.55 -169.99 -5.02 18.21 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 27 C 0.08 1.18 4.84 -3.83 -0.02 1.17 16 28 N -0.51 -5.24 4.91 -9.88 -0.05 -5.28 16 29 H 0.06 0.36 7.18 -51.93 -0.37 -0.01 16 30 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 33 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.15 1.49 7.67 -52.48 -0.40 1.09 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.14 1.44 3.15 -85.37 -0.27 1.17 16 37 H 0.08 0.91 8.01 -51.93 -0.42 0.49 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.04 0.65 7.40 -51.93 -0.38 0.27 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.39 11.27 7.65 -40.82 -0.31 10.96 16 44 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.09 1.18 8.11 -51.93 -0.42 0.75 16 46 H 0.09 1.48 7.32 -51.93 -0.38 1.10 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -35.68 374.18 -7.71 -43.38 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.73 Total: 6.69 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.20 Total: 7.70 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.04 Total: -62.66 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.36 Total: -18.96 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.02 Total: 18.21 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.68 -7.71 -43.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201774422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.334 kcal (2) G-P(sol) polarization free energy of solvation -35.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds