Wall clock time and date at job start Tue Mar 31 2020 19:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35666 * 116.99731 * 2 1 4 4 C 1.39284 * 119.61578 * 179.97438 * 3 2 1 5 5 C 1.38330 * 119.30509 * 180.02562 * 4 3 2 6 6 C 1.38779 * 118.55908 * 359.73313 * 5 4 3 7 7 C 1.39128 * 119.18839 * 0.52752 * 6 5 4 8 8 C 1.48146 * 119.69163 * 179.72681 * 7 6 5 9 9 O 1.21522 * 120.00158 * 10.84854 * 8 7 6 10 10 N 1.34778 * 120.00488 * 190.84451 * 8 7 6 11 11 C 1.47516 * 118.75074 * 2.96665 * 10 8 7 12 12 C 1.53564 * 111.02561 * 138.34738 * 11 10 8 13 13 C 1.51532 * 109.58428 * 320.01957 * 12 11 10 14 14 O 1.42153 * 108.75405 * 91.39955 * 13 12 11 15 15 C 1.38010 * 119.44462 * 272.77357 * 14 13 12 16 16 H 1.08998 * 109.46911 * 303.42288 * 15 14 13 17 17 C 1.52998 * 109.47351 * 183.43051 * 15 14 13 18 18 N 1.46500 * 109.47249 * 64.98972 * 17 15 14 19 19 C 1.36938 * 120.00116 * 179.73035 * 18 17 15 20 20 H 1.07997 * 120.00374 * 0.27284 * 19 18 17 21 21 C 1.38819 * 119.99787 * 180.27528 * 19 18 17 22 22 N 1.31612 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99811 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47109 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46911 * 119.99908 * 23 21 19 26 26 H 1.48491 * 109.46930 * 240.00078 * 23 21 19 27 27 C 1.45111 * 118.76206 * 182.94598 * 10 8 7 28 28 N 1.31899 * 119.62000 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47340 * 300.00134 * 1 2 3 30 30 H 1.09000 * 109.47077 * 60.00795 * 1 2 3 31 31 H 1.09007 * 109.46780 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.34761 * 0.04854 * 4 3 2 33 33 H 1.08000 * 120.71891 * 180.02562 * 5 4 3 34 34 H 1.08009 * 120.40830 * 180.28282 * 6 5 4 35 35 H 1.08999 * 109.16617 * 258.74339 * 11 10 8 36 36 H 1.08998 * 109.16498 * 17.94562 * 11 10 8 37 37 H 1.09000 * 109.45760 * 80.05618 * 12 11 10 38 38 H 1.09006 * 109.45410 * 199.98895 * 12 11 10 39 39 H 1.09001 * 109.59746 * 211.18636 * 13 12 11 40 40 H 1.09002 * 109.58831 * 331.62606 * 13 12 11 41 41 H 1.09006 * 109.46881 * 304.99540 * 17 15 14 42 42 H 1.08999 * 109.47562 * 184.98998 * 17 15 14 43 43 H 0.97002 * 119.99706 * 0.02562 * 18 17 15 44 44 H 0.97004 * 120.00068 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.46151 * 149.28339 * 27 10 8 46 46 H 1.09003 * 109.45960 * 29.32578 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4363 1.2725 0.0005 5 6 4.0575 2.5084 0.0011 6 6 3.2664 3.6486 -0.0046 7 6 1.8817 3.5137 0.0005 8 6 1.0266 4.7234 0.0007 9 8 1.5191 5.8158 -0.2017 10 7 -0.2978 4.6126 0.2251 11 6 -0.8564 3.2825 0.5331 12 6 -1.8984 3.3695 1.6578 13 6 -1.4239 4.3454 2.7154 14 8 -1.9254 5.6382 2.4023 15 6 -1.2064 6.4583 1.5566 16 1 -0.2014 6.5989 1.9545 17 6 -1.9052 7.8149 1.4457 18 7 -1.8811 8.4846 2.7484 19 6 -2.4464 9.7236 2.8919 20 1 -2.9139 10.2052 2.0458 21 6 -2.4184 10.3606 4.1250 22 7 -1.8483 9.7740 5.1560 23 14 -3.1889 12.0511 4.3205 24 1 -3.7595 12.4884 3.0211 25 1 -4.2683 11.9883 5.3386 26 1 -2.1520 13.0200 4.7575 27 6 -1.1201 5.8062 0.1552 28 7 1.3191 2.3102 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 4.0239 0.3663 0.0002 33 1 5.1348 2.5843 0.0011 34 1 3.7201 4.6288 -0.0090 35 1 -1.3286 2.8768 -0.3616 36 1 -0.0495 2.6186 0.8432 37 1 -2.8480 3.7125 1.2472 38 1 -2.0316 2.3849 2.1061 39 1 -1.7960 4.0357 3.6920 40 1 -0.3342 4.3694 2.7280 41 1 -2.9387 7.6666 1.1325 42 1 -1.3876 8.4312 0.7107 43 1 -1.4609 8.0522 3.5083 44 1 -1.8291 10.2190 6.0177 45 1 -2.1210 5.5383 -0.1829 46 1 -0.6766 6.5121 -0.5471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201774422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:40 Heat of formation + Delta-G solvation = -54.675217 kcal Electronic energy + Delta-G solvation = -29867.476450 eV Core-core repulsion = 25758.651821 eV Total energy + Delta-G solvation = -4108.824629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.36320 -41.16597 -39.81657 -38.63409 -37.02079 -36.34198 -34.41554 -33.76395 -32.70103 -31.99322 -30.35163 -28.37311 -27.99442 -26.80228 -25.60921 -24.26591 -23.91076 -22.84631 -22.34272 -21.21726 -19.28010 -19.04761 -18.89799 -17.78757 -17.62979 -17.37222 -17.20744 -17.05199 -16.71450 -16.53706 -16.00331 -15.90453 -15.19120 -15.15635 -14.97925 -14.90083 -14.64006 -14.48928 -14.30086 -13.92378 -13.61415 -13.32055 -13.22290 -13.13161 -12.80362 -12.69454 -12.68371 -12.44862 -12.27241 -12.12891 -12.03248 -11.84563 -11.64368 -11.42366 -11.03998 -10.99901 -10.61068 -10.17651 -9.84896 -9.52508 -9.02714 -7.94765 -5.24947 -0.48814 0.15999 1.46243 1.48743 1.54071 1.58981 1.74084 2.04779 2.55580 2.65218 2.66608 2.82035 3.38746 3.51820 3.59307 3.83417 3.87637 3.97002 3.99246 4.04393 4.09030 4.18094 4.32621 4.36043 4.38753 4.43657 4.46849 4.47705 4.52295 4.64886 4.80958 4.82862 4.87340 4.89828 5.01383 5.05584 5.07618 5.09614 5.15850 5.30904 5.47013 5.51978 6.03766 6.16932 6.25600 6.47284 6.68638 6.91151 7.31633 8.05007 8.30697 9.29475 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.002700 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.430010 B =10369.403109 C =10976.708221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.301 3.699 4 C -0.155 4.155 5 C -0.033 4.033 6 C -0.152 4.152 7 C 0.095 3.905 8 C 0.552 3.448 9 O -0.565 6.565 10 N -0.586 5.586 11 C 0.077 3.923 12 C -0.158 4.158 13 C 0.068 3.932 14 O -0.394 6.394 15 C 0.105 3.895 16 H 0.020 0.980 17 C 0.164 3.836 18 N -0.741 5.741 19 C -0.246 4.246 20 H 0.079 0.921 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.980 3.020 24 H -0.264 1.264 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.090 3.910 28 N -0.511 5.511 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.124 0.876 32 H 0.178 0.822 33 H 0.189 0.811 34 H 0.145 0.855 35 H 0.079 0.921 36 H 0.148 0.852 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.033 0.967 41 H 0.035 0.965 42 H 0.038 0.962 43 H 0.373 0.627 44 H 0.251 0.749 45 H 0.105 0.895 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.091 -27.269 -13.519 31.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.215 6.215 3 C 0.120 3.880 4 C -0.175 4.175 5 C -0.057 4.057 6 C -0.173 4.173 7 C -0.039 4.039 8 C 0.339 3.661 9 O -0.444 6.444 10 N -0.316 5.316 11 C -0.044 4.044 12 C -0.197 4.197 13 C -0.008 4.008 14 O -0.313 6.313 15 C 0.045 3.955 16 H 0.038 0.962 17 C 0.037 3.963 18 N -0.384 5.384 19 C -0.378 4.378 20 H 0.097 0.903 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.809 3.191 24 H -0.188 1.188 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.034 4.034 28 N -0.239 5.239 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.142 0.858 32 H 0.195 0.805 33 H 0.206 0.794 34 H 0.163 0.837 35 H 0.097 0.903 36 H 0.164 0.836 37 H 0.093 0.907 38 H 0.134 0.866 39 H 0.115 0.885 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.204 0.796 44 H 0.060 0.940 45 H 0.124 0.876 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.224 -26.830 -13.662 31.211 hybrid contribution 0.464 1.227 0.592 1.439 sum 8.689 -25.602 -13.070 30.030 Atomic orbital electron populations 1.23265 0.75815 1.05182 1.02579 1.86281 1.24309 1.23283 1.87651 1.20358 0.90566 0.84584 0.92460 1.21743 0.91457 1.01146 1.03161 1.21884 1.02616 0.89389 0.91835 1.22149 0.92445 1.02131 1.00610 1.20484 0.92641 0.89649 1.01153 1.18552 0.82605 0.87850 0.77050 1.90799 1.73937 1.28321 1.51327 1.47928 1.06565 1.09964 1.67170 1.23485 0.99992 0.82249 0.98657 1.22505 0.99475 1.01367 0.96308 1.22348 0.97423 0.81829 0.99204 1.86350 1.50793 1.27800 1.66397 1.21890 0.93522 0.90098 0.90006 0.96221 1.20748 0.97894 0.89348 0.88313 1.42448 1.69454 1.18743 1.07709 1.19727 1.28484 0.94106 0.95466 0.90287 1.25674 1.02773 1.03067 0.95616 1.69864 1.51211 1.40142 1.01009 0.84973 0.77267 0.79050 0.77842 1.18792 1.21800 1.21924 1.22252 0.96656 0.87273 0.97205 1.67293 1.38889 0.98246 1.19522 0.91868 0.92221 0.85837 0.80491 0.79394 0.83699 0.90288 0.83632 0.90684 0.86563 0.88528 0.94864 0.94734 0.94397 0.79597 0.94002 0.87642 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.25 113.37 1.16 1.40 16 2 O -0.31 -4.23 10.48 -89.82 -0.94 -5.17 16 3 C 0.30 4.76 7.49 84.93 0.64 5.39 16 4 C -0.15 -1.72 10.05 22.54 0.23 -1.49 16 5 C -0.03 -0.36 10.16 22.42 0.23 -0.13 16 6 C -0.15 -2.91 9.62 22.61 0.22 -2.69 16 7 C 0.09 2.25 6.53 41.84 0.27 2.52 16 8 C 0.55 16.85 7.60 86.88 0.66 17.51 16 9 O -0.57 -21.32 15.83 -3.79 -0.06 -21.38 16 10 N -0.59 -16.28 2.19 -821.04 -1.80 -18.08 16 11 C 0.08 1.56 5.29 86.37 0.46 2.01 16 12 C -0.16 -3.17 5.78 30.30 0.18 -2.99 16 13 C 0.07 1.95 6.38 71.50 0.46 2.40 16 14 O -0.39 -15.10 9.38 -117.80 -1.11 -16.21 16 15 C 0.11 4.10 2.68 31.21 0.08 4.19 16 16 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 17 C 0.16 7.41 5.92 86.38 0.51 7.93 16 18 N -0.74 -41.94 5.54 -343.45 -1.90 -43.85 16 19 C -0.25 -14.75 9.99 84.03 0.84 -13.91 16 20 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 21 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 22 N -0.97 -62.97 13.06 21.65 0.28 -62.68 16 23 Si 0.98 48.29 29.55 68.60 2.03 50.32 16 24 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 27 C 0.09 2.80 4.84 87.26 0.42 3.23 16 28 N -0.51 -9.90 4.91 -298.22 -1.46 -11.36 16 29 H 0.06 0.57 7.18 -2.39 -0.02 0.55 16 30 H 0.06 0.58 8.10 -2.39 -0.02 0.56 16 31 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 33 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 34 H 0.15 2.94 7.67 -2.91 -0.02 2.92 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.15 2.84 3.15 -68.41 -0.22 2.62 16 37 H 0.07 1.60 8.01 -2.39 -0.02 1.58 16 38 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.03 1.01 7.40 -2.39 -0.02 1.00 16 41 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.37 22.77 7.65 -92.71 -0.71 22.06 16 44 H 0.25 15.60 8.31 -92.70 -0.77 14.83 16 45 H 0.11 2.83 8.11 -2.39 -0.02 2.81 16 46 H 0.08 2.79 7.32 -2.39 -0.02 2.78 16 Total: -1.00 -80.28 374.18 1.94 -78.34 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.09 Total: 29.08 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 6.82 Total: 20.99 kcal Atomic # 7 Polarization: -131.08 SS G_CDS: -4.88 Total: -135.96 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -2.11 Total: -42.76 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Total: -80.28 1.94 -78.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201774422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.663 kcal (2) G-P(sol) polarization free energy of solvation -80.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds