Wall clock time and date at job start Tue Mar 31 2020 18:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35437 * 119.47563 * 2 1 4 4 C 1.35758 * 121.23290 * 179.97438 * 3 2 1 5 5 C 1.39465 * 120.13123 * 0.02562 * 4 3 2 6 6 C 1.39345 * 118.95961 * 0.27974 * 5 4 3 7 7 C 1.47074 * 120.58317 * 179.72235 * 6 5 4 8 8 O 1.21650 * 119.99973 * 255.08076 * 7 6 5 9 9 N 1.34773 * 120.00270 * 75.09154 * 7 6 5 10 10 C 1.47514 * 118.76022 * 5.16616 * 9 7 6 11 11 C 1.53574 * 111.02781 * 138.35058 * 10 9 7 12 12 C 1.51533 * 109.58449 * 320.02333 * 11 10 9 13 13 O 1.42162 * 108.75101 * 91.39912 * 12 11 10 14 14 C 1.38011 * 119.44187 * 272.76582 * 13 12 11 15 15 H 1.08998 * 109.47341 * 303.44068 * 14 13 12 16 16 C 1.52993 * 109.47174 * 183.43255 * 14 13 12 17 17 N 1.46506 * 109.46715 * 65.00483 * 16 14 13 18 18 C 1.36940 * 119.99929 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00147 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00107 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99748 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99868 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47402 * 90.00062 * 22 20 18 24 24 H 1.48507 * 109.46815 * 209.99513 * 22 20 18 25 25 H 1.48500 * 109.47059 * 329.99455 * 22 20 18 26 26 C 1.45127 * 118.76058 * 184.89932 * 9 7 6 27 27 C 1.34657 * 119.47195 * 180.02562 * 2 1 3 28 28 O 1.21892 * 120.10081 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47069 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47219 * 119.99734 * 1 2 3 31 31 H 1.08998 * 109.47542 * 240.00838 * 1 2 3 32 32 H 1.07998 * 119.37858 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.93035 * 180.02562 * 4 3 2 34 34 H 1.07997 * 120.52091 * 180.02562 * 5 4 3 35 35 H 1.08993 * 109.16876 * 258.75582 * 10 9 7 36 36 H 1.09003 * 109.16335 * 18.00709 * 10 9 7 37 37 H 1.08998 * 109.44865 * 80.06533 * 11 10 9 38 38 H 1.08998 * 109.45010 * 200.01284 * 11 10 9 39 39 H 1.08996 * 109.59023 * 211.17888 * 12 11 10 40 40 H 1.08991 * 109.59176 * 331.47715 * 12 11 10 41 41 H 1.09000 * 109.47675 * 185.00135 * 16 14 13 42 42 H 1.08992 * 109.47724 * 305.00729 * 16 14 13 43 43 H 0.96996 * 120.00515 * 359.97438 * 17 16 14 44 44 H 0.97001 * 119.99728 * 180.02562 * 21 20 18 45 45 H 1.09010 * 109.45361 * 29.32759 * 26 9 7 46 46 H 1.08993 * 109.46243 * 149.28033 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1314 1.1791 0.0000 4 6 3.4883 1.2207 0.0005 5 6 4.2251 0.0365 0.0005 6 6 3.5463 -1.1804 -0.0060 7 6 4.2876 -2.4507 -0.0123 8 8 4.3602 -3.1074 -1.0337 9 7 4.8863 -2.8872 1.1135 10 6 4.6851 -2.1304 2.3636 11 6 4.4689 -3.0779 3.5527 12 6 3.5938 -4.2386 3.1247 13 8 4.4278 -5.2967 2.6710 14 6 4.8293 -5.3257 1.3509 15 1 3.9521 -5.3171 0.7040 16 6 5.6413 -6.5964 1.0926 17 7 4.7796 -7.7691 1.2613 18 6 5.2909 -9.0264 1.0790 19 1 6.3293 -9.1534 0.8104 20 6 4.4743 -10.1376 1.2384 21 7 3.2088 -9.9828 1.5652 22 14 5.1720 -11.8526 0.9903 23 1 5.6991 -12.3640 2.2810 24 1 4.1007 -12.7566 0.5002 25 1 6.2707 -11.8005 -0.0074 26 6 5.6997 -4.0875 1.0514 27 6 2.1275 -1.1723 -0.0005 28 8 1.5102 -2.2234 -0.0005 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 -0.3634 -0.5137 0.8900 32 1 1.5728 2.1034 0.0004 33 1 3.9982 2.1727 0.0009 34 1 5.3047 0.0623 0.0014 35 1 5.5629 -1.5127 2.5531 36 1 3.8116 -1.4873 2.2560 37 1 5.4321 -3.4563 3.8951 38 1 3.9823 -2.5368 4.3641 39 1 2.9990 -4.5797 3.9719 40 1 2.9329 -3.9202 2.3186 41 1 6.0332 -6.5768 0.0756 42 1 6.4689 -6.6489 1.7999 43 1 3.8470 -7.6552 1.5022 44 1 2.6383 -10.7593 1.6769 45 1 6.1295 -4.1836 0.0542 46 1 6.5012 -4.0214 1.7871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201879978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:34 Heat of formation + Delta-G solvation = -43.848311 kcal Electronic energy + Delta-G solvation = -29982.950943 eV Core-core repulsion = 25874.595803 eV Total energy + Delta-G solvation = -4108.355140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.82278 -40.22779 -38.27284 -37.28270 -35.54236 -34.86749 -34.46271 -32.75305 -30.87240 -30.64748 -28.65956 -28.12982 -26.63401 -25.63019 -24.38062 -23.08008 -22.55219 -21.60476 -20.80682 -19.77194 -18.01798 -17.85128 -17.33026 -17.01697 -16.65779 -16.31103 -16.16537 -16.06376 -15.49187 -14.96304 -14.68183 -14.49323 -14.21098 -13.68176 -13.60338 -13.48883 -13.23042 -13.08866 -12.96519 -12.82680 -12.59542 -12.46311 -12.27153 -12.15523 -11.90062 -11.60216 -11.27206 -10.84176 -10.69990 -10.69301 -10.49958 -10.36393 -10.12196 -9.95893 -9.76295 -9.56231 -9.25774 -8.72301 -8.44853 -8.34120 -6.72966 -5.58331 -2.86294 0.18443 1.45769 2.02369 2.65950 2.91874 3.25402 3.55291 3.59142 3.61839 3.99084 4.10448 4.15010 4.34008 4.51412 4.62234 4.69230 4.74377 4.79371 4.81901 4.83919 5.05355 5.15656 5.27407 5.36274 5.45877 5.49005 5.53067 5.57205 5.63288 5.67116 5.73589 5.75865 5.96050 5.99309 6.11543 6.13613 6.24337 6.46863 6.55075 6.62759 6.79495 6.92679 7.27961 7.66367 7.84363 8.15324 8.18048 8.59801 9.70908 10.30712 10.66716 11.64712 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.002811 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.777733 B = 9958.283142 C =10311.783286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.496 5.496 3 C 0.148 3.852 4 C -0.237 4.237 5 C 0.019 3.981 6 C -0.249 4.249 7 C 0.578 3.422 8 O -0.515 6.515 9 N -0.602 5.602 10 C 0.112 3.888 11 C -0.165 4.165 12 C 0.072 3.928 13 O -0.368 6.368 14 C 0.087 3.913 15 H 0.055 0.945 16 C 0.167 3.833 17 N -0.726 5.726 18 C -0.235 4.235 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.083 3.917 27 C 0.527 3.473 28 O -0.521 6.521 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.166 0.834 33 H 0.152 0.848 34 H 0.140 0.860 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.034 0.966 42 H 0.027 0.973 43 H 0.387 0.613 44 H 0.253 0.747 45 H 0.093 0.907 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.458 33.958 1.672 34.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.206 5.206 3 C 0.019 3.981 4 C -0.260 4.260 5 C -0.003 4.003 6 C -0.256 4.256 7 C 0.364 3.636 8 O -0.390 6.390 9 N -0.336 5.336 10 C -0.010 4.010 11 C -0.203 4.203 12 C -0.005 4.005 13 O -0.286 6.286 14 C 0.027 3.973 15 H 0.073 0.927 16 C 0.039 3.961 17 N -0.370 5.370 18 C -0.366 4.366 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.040 4.040 27 C 0.326 3.674 28 O -0.400 6.400 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.183 0.817 33 H 0.170 0.830 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.221 0.779 44 H 0.063 0.937 45 H 0.111 0.889 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.706 32.593 1.204 32.660 hybrid contribution -0.096 -0.366 -0.164 0.413 sum -1.802 32.226 1.040 32.293 Atomic orbital electron populations 1.22229 0.76476 1.04077 1.05213 1.45449 1.09621 1.06709 1.58794 1.22178 0.94191 0.89382 0.92336 1.20552 0.92315 0.99439 1.13713 1.21810 1.00805 0.90522 0.87168 1.20908 0.93207 0.95226 1.16297 1.17597 0.78354 0.84044 0.83583 1.90854 1.59188 1.56450 1.32461 1.47842 1.49997 1.27340 1.08380 1.21903 1.01407 0.93923 0.83801 1.22499 1.02822 0.97763 0.97258 1.22103 0.92090 0.87169 0.99177 1.86411 1.67378 1.47775 1.27068 1.22184 0.97092 0.94530 0.83532 0.92711 1.20598 0.92986 0.84747 0.97756 1.42245 1.10363 1.00361 1.84048 1.19239 0.94853 0.83502 1.39033 0.91198 1.24743 0.95820 0.97762 1.02891 1.69691 1.04792 1.28822 1.54797 0.86179 0.77596 0.84782 0.77587 1.21843 1.21886 1.20815 1.22338 0.93881 0.83889 1.03915 1.16744 0.87811 0.82984 0.79813 1.91035 1.69103 1.29141 1.50738 0.89085 0.89672 0.89648 0.81656 0.83046 0.84254 0.91505 0.90662 0.89864 0.89901 0.89451 0.93091 0.94807 0.95540 0.77894 0.93673 0.88904 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 10.04 59.85 0.60 0.93 16 2 N -0.50 -3.97 2.98 -126.77 -0.38 -4.35 16 3 C 0.15 0.61 10.28 -16.85 -0.17 0.44 16 4 C -0.24 -1.05 9.99 -40.01 -0.40 -1.45 16 5 C 0.02 0.15 9.59 -38.71 -0.37 -0.22 16 6 C -0.25 -3.14 3.65 -104.51 -0.38 -3.52 16 7 C 0.58 9.49 6.62 -12.68 -0.08 9.40 16 8 O -0.52 -10.83 16.59 5.23 0.09 -10.74 16 9 N -0.60 -8.66 2.21 -174.19 -0.38 -9.05 16 10 C 0.11 1.18 5.81 -3.19 -0.02 1.16 16 11 C -0.17 -1.85 5.78 -27.18 -0.16 -2.01 16 12 C 0.07 1.12 6.37 36.42 0.23 1.35 16 13 O -0.37 -7.33 9.38 -26.52 -0.25 -7.58 16 14 C 0.09 1.76 2.67 -26.06 -0.07 1.69 16 15 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 16 C 0.17 3.86 5.92 -4.04 -0.02 3.84 16 17 N -0.73 -20.76 5.54 -59.91 -0.33 -21.10 16 18 C -0.23 -7.15 9.99 -15.06 -0.15 -7.30 16 19 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 20 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 21 N -0.93 -30.41 13.06 55.49 0.72 -29.69 16 22 Si 0.91 23.84 29.55 -169.99 -5.02 18.82 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 25 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 26 C 0.08 1.33 4.78 -4.10 -0.02 1.31 16 27 C 0.53 7.07 7.44 -14.92 -0.11 6.96 16 28 O -0.52 -9.58 16.55 5.02 0.08 -9.49 16 29 H 0.09 0.10 7.70 -51.93 -0.40 -0.30 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.17 -0.07 7.79 -52.49 -0.41 -0.48 16 33 H 0.15 0.19 8.06 -52.49 -0.42 -0.23 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.74 6.37 -51.93 -0.33 0.41 16 37 H 0.08 0.96 8.01 -51.93 -0.42 0.55 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.05 0.89 7.41 -51.93 -0.38 0.50 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.39 11.86 7.65 -40.82 -0.31 11.55 16 44 H 0.25 7.93 8.31 -40.82 -0.34 7.59 16 45 H 0.09 1.54 7.34 -51.92 -0.38 1.16 16 46 H 0.08 1.17 8.11 -51.93 -0.42 0.75 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -42.53 379.37 -7.81 -50.34 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.83 Total: 5.15 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -1.22 Total: 11.97 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -0.37 Total: -64.18 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.08 Total: -27.82 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -5.02 Total: 18.82 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -42.53 -7.81 -50.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201879978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.490 kcal (2) G-P(sol) polarization free energy of solvation -42.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds