Wall clock time and date at job start Tue Mar 31 2020 18:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35437 * 119.47563 * 2 1 4 4 C 1.35758 * 121.23290 * 179.97438 * 3 2 1 5 5 C 1.39465 * 120.13123 * 0.02562 * 4 3 2 6 6 C 1.39345 * 118.95961 * 0.27974 * 5 4 3 7 7 C 1.47074 * 120.58317 * 179.72235 * 6 5 4 8 8 O 1.21650 * 119.99973 * 255.08076 * 7 6 5 9 9 N 1.34773 * 120.00270 * 75.09154 * 7 6 5 10 10 C 1.47514 * 118.76022 * 5.16616 * 9 7 6 11 11 C 1.53574 * 111.02781 * 138.35058 * 10 9 7 12 12 C 1.51533 * 109.58449 * 320.02333 * 11 10 9 13 13 O 1.42162 * 108.75101 * 91.39912 * 12 11 10 14 14 C 1.38011 * 119.44187 * 272.76582 * 13 12 11 15 15 H 1.08998 * 109.47341 * 303.44068 * 14 13 12 16 16 C 1.52993 * 109.47174 * 183.43255 * 14 13 12 17 17 N 1.46506 * 109.46715 * 65.00483 * 16 14 13 18 18 C 1.36940 * 119.99929 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00147 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00107 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99748 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99868 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47402 * 90.00062 * 22 20 18 24 24 H 1.48507 * 109.46815 * 209.99513 * 22 20 18 25 25 H 1.48500 * 109.47059 * 329.99455 * 22 20 18 26 26 C 1.45127 * 118.76058 * 184.89932 * 9 7 6 27 27 C 1.34657 * 119.47195 * 180.02562 * 2 1 3 28 28 O 1.21892 * 120.10081 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47069 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47219 * 119.99734 * 1 2 3 31 31 H 1.08998 * 109.47542 * 240.00838 * 1 2 3 32 32 H 1.07998 * 119.37858 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.93035 * 180.02562 * 4 3 2 34 34 H 1.07997 * 120.52091 * 180.02562 * 5 4 3 35 35 H 1.08993 * 109.16876 * 258.75582 * 10 9 7 36 36 H 1.09003 * 109.16335 * 18.00709 * 10 9 7 37 37 H 1.08998 * 109.44865 * 80.06533 * 11 10 9 38 38 H 1.08998 * 109.45010 * 200.01284 * 11 10 9 39 39 H 1.08996 * 109.59023 * 211.17888 * 12 11 10 40 40 H 1.08991 * 109.59176 * 331.47715 * 12 11 10 41 41 H 1.09000 * 109.47675 * 185.00135 * 16 14 13 42 42 H 1.08992 * 109.47724 * 305.00729 * 16 14 13 43 43 H 0.96996 * 120.00515 * 359.97438 * 17 16 14 44 44 H 0.97001 * 119.99728 * 180.02562 * 21 20 18 45 45 H 1.09010 * 109.45361 * 29.32759 * 26 9 7 46 46 H 1.08993 * 109.46243 * 149.28033 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1314 1.1791 0.0000 4 6 3.4883 1.2207 0.0005 5 6 4.2251 0.0365 0.0005 6 6 3.5463 -1.1804 -0.0060 7 6 4.2876 -2.4507 -0.0123 8 8 4.3602 -3.1074 -1.0337 9 7 4.8863 -2.8872 1.1135 10 6 4.6851 -2.1304 2.3636 11 6 4.4689 -3.0779 3.5527 12 6 3.5938 -4.2386 3.1247 13 8 4.4278 -5.2967 2.6710 14 6 4.8293 -5.3257 1.3509 15 1 3.9521 -5.3171 0.7040 16 6 5.6413 -6.5964 1.0926 17 7 4.7796 -7.7691 1.2613 18 6 5.2909 -9.0264 1.0790 19 1 6.3293 -9.1534 0.8104 20 6 4.4743 -10.1376 1.2384 21 7 3.2088 -9.9828 1.5652 22 14 5.1720 -11.8526 0.9903 23 1 5.6991 -12.3640 2.2810 24 1 4.1007 -12.7566 0.5002 25 1 6.2707 -11.8005 -0.0074 26 6 5.6997 -4.0875 1.0514 27 6 2.1275 -1.1723 -0.0005 28 8 1.5102 -2.2234 -0.0005 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 -0.3634 -0.5137 0.8900 32 1 1.5728 2.1034 0.0004 33 1 3.9982 2.1727 0.0009 34 1 5.3047 0.0623 0.0014 35 1 5.5629 -1.5127 2.5531 36 1 3.8116 -1.4873 2.2560 37 1 5.4321 -3.4563 3.8951 38 1 3.9823 -2.5368 4.3641 39 1 2.9990 -4.5797 3.9719 40 1 2.9329 -3.9202 2.3186 41 1 6.0332 -6.5768 0.0756 42 1 6.4689 -6.6489 1.7999 43 1 3.8470 -7.6552 1.5022 44 1 2.6383 -10.7593 1.6769 45 1 6.1295 -4.1836 0.0542 46 1 6.5012 -4.0214 1.7871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201879978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:33 Heat of formation + Delta-G solvation = -77.754273 kcal Electronic energy + Delta-G solvation = -29984.421215 eV Core-core repulsion = 25874.595803 eV Total energy + Delta-G solvation = -4109.825412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.59975 -41.41773 -39.64378 -38.14511 -36.96092 -36.29541 -35.54263 -34.38180 -32.71991 -31.52258 -30.12867 -28.68214 -27.96442 -26.91088 -25.72650 -24.28293 -23.72983 -22.89122 -22.38145 -20.77464 -19.29705 -18.97245 -18.56050 -18.03708 -17.84066 -17.69807 -17.12540 -17.02698 -16.69692 -16.49888 -15.84199 -15.73133 -15.41506 -15.19911 -14.90077 -14.75190 -14.65748 -14.27976 -13.96555 -13.79656 -13.64442 -13.44901 -13.37581 -13.16006 -13.10572 -12.85603 -12.77633 -12.68417 -12.40154 -12.18046 -12.06324 -11.85398 -11.60394 -11.40308 -11.11003 -11.00557 -10.91543 -10.64412 -9.73167 -9.05727 -9.03767 -7.95945 -5.27410 -0.39381 0.82428 1.19190 1.43659 1.48665 1.57024 1.74291 1.94488 2.51573 2.54585 2.63476 3.36830 3.42004 3.57685 3.63684 3.77817 3.84854 3.93861 3.99499 4.02417 4.07102 4.14859 4.22164 4.30341 4.34691 4.37636 4.42693 4.49453 4.61694 4.64781 4.74885 4.77182 4.81735 4.85670 4.98415 5.02650 5.05000 5.13009 5.21504 5.43780 5.47725 5.56265 5.94202 6.18491 6.23431 6.64659 6.86790 7.02493 7.28558 8.01803 8.28202 9.28497 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.002811 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.777733 B = 9958.283142 C =10311.783286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.491 5.491 3 C 0.171 3.829 4 C -0.233 4.233 5 C 0.055 3.945 6 C -0.312 4.312 7 C 0.573 3.427 8 O -0.585 6.585 9 N -0.600 5.600 10 C 0.109 3.891 11 C -0.153 4.153 12 C 0.065 3.935 13 O -0.392 6.392 14 C 0.102 3.898 15 H 0.001 0.999 16 C 0.166 3.834 17 N -0.744 5.744 18 C -0.249 4.249 19 H 0.082 0.918 20 C -0.083 4.083 21 N -0.975 5.975 22 Si 0.986 3.014 23 H -0.281 1.281 24 H -0.295 1.295 25 H -0.266 1.266 26 C 0.096 3.904 27 C 0.511 3.489 28 O -0.604 6.604 29 H 0.150 0.850 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.230 0.770 33 H 0.202 0.798 34 H 0.160 0.840 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.021 0.979 41 H 0.035 0.965 42 H 0.042 0.958 43 H 0.370 0.630 44 H 0.251 0.749 45 H 0.080 0.920 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.233 38.951 3.008 39.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.197 5.197 3 C 0.041 3.959 4 C -0.254 4.254 5 C 0.032 3.968 6 C -0.319 4.319 7 C 0.362 3.638 8 O -0.465 6.465 9 N -0.332 5.332 10 C -0.011 4.011 11 C -0.191 4.191 12 C -0.011 4.011 13 O -0.311 6.311 14 C 0.042 3.958 15 H 0.019 0.981 16 C 0.039 3.961 17 N -0.386 5.386 18 C -0.380 4.380 19 H 0.100 0.900 20 C -0.275 4.275 21 N -0.625 5.625 22 Si 0.813 3.187 23 H -0.208 1.208 24 H -0.221 1.221 25 H -0.191 1.191 26 C -0.029 4.029 27 C 0.314 3.686 28 O -0.490 6.490 29 H 0.168 0.832 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.246 0.754 33 H 0.218 0.782 34 H 0.178 0.822 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.112 0.888 40 H 0.040 0.960 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.201 0.799 44 H 0.060 0.940 45 H 0.099 0.901 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.027 37.700 2.580 37.789 hybrid contribution -0.699 -1.640 -0.553 1.867 sum -0.672 36.060 2.026 36.123 Atomic orbital electron populations 1.22480 0.75023 1.07296 1.03699 1.45517 1.10776 1.06595 1.56844 1.23342 0.94935 0.89530 0.88046 1.21174 0.92445 0.99800 1.11977 1.22229 1.02055 0.89687 0.82821 1.20469 0.92830 0.94948 1.23695 1.18361 0.77502 0.85063 0.82874 1.90783 1.61618 1.59043 1.35028 1.47977 1.49073 1.26520 1.09595 1.22219 1.03808 0.93673 0.81420 1.22434 1.02131 0.96004 0.98542 1.22345 0.92471 0.88152 0.98155 1.86324 1.68189 1.50316 1.26319 1.21808 0.95481 0.95509 0.82996 0.98065 1.20747 0.93008 0.84380 0.97989 1.42489 1.10211 1.01683 1.84175 1.19736 0.95453 0.84453 1.38384 0.90018 1.25772 0.96183 1.02441 1.03069 1.69895 1.06420 1.29899 1.56327 0.84963 0.77008 0.78698 0.77985 1.20797 1.22119 1.19072 1.22065 0.93740 0.82943 1.04111 1.17001 0.88321 0.83576 0.79698 1.90978 1.70513 1.32148 1.55398 0.83194 0.91724 0.90982 0.75379 0.78150 0.82201 0.87179 0.89846 0.89308 0.86166 0.88802 0.96044 0.94701 0.93988 0.79889 0.94007 0.90121 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 10.04 127.77 1.28 1.80 16 2 N -0.49 -6.93 2.98 -673.19 -2.00 -8.93 16 3 C 0.17 0.42 10.28 83.56 0.86 1.28 16 4 C -0.23 -0.64 9.99 21.99 0.22 -0.42 16 5 C 0.06 0.67 9.59 22.83 0.22 0.89 16 6 C -0.31 -8.03 3.65 -19.79 -0.07 -8.11 16 7 C 0.57 20.29 6.62 86.56 0.57 20.86 16 8 O -0.59 -27.46 16.59 -4.19 -0.07 -27.53 16 9 N -0.60 -17.85 2.21 -823.25 -1.82 -19.66 16 10 C 0.11 2.10 5.81 86.38 0.50 2.60 16 11 C -0.15 -3.17 5.78 30.31 0.18 -3.00 16 12 C 0.06 2.15 6.37 71.50 0.46 2.60 16 13 O -0.39 -16.62 9.38 -117.82 -1.11 -17.72 16 14 C 0.10 4.50 2.67 31.03 0.08 4.58 16 15 H 0.00 0.07 8.14 -2.39 -0.02 0.06 16 16 C 0.17 8.09 5.92 86.38 0.51 8.60 16 17 N -0.74 -45.03 5.54 -343.45 -1.90 -46.94 16 18 C -0.25 -15.62 9.99 84.03 0.84 -14.78 16 19 H 0.08 4.81 7.83 -2.91 -0.02 4.79 16 20 C -0.08 -5.28 5.50 84.86 0.47 -4.81 16 21 N -0.97 -66.32 13.06 21.65 0.28 -66.04 16 22 Si 0.99 50.14 29.55 68.60 2.03 52.17 16 23 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 24 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 25 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 26 C 0.10 3.20 4.78 87.07 0.42 3.62 16 27 C 0.51 14.47 7.44 85.16 0.63 15.11 16 28 O -0.60 -25.10 16.55 -4.96 -0.08 -25.18 16 29 H 0.15 -0.44 7.70 -2.39 -0.02 -0.46 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.23 -2.26 7.79 -2.91 -0.02 -2.28 16 33 H 0.20 -1.24 8.06 -2.91 -0.02 -1.26 16 34 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 35 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.52 6.37 -2.39 -0.02 1.50 16 37 H 0.09 1.81 8.01 -2.39 -0.02 1.79 16 38 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.02 0.83 7.41 -2.39 -0.02 0.81 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.37 24.46 7.65 -92.71 -0.71 23.76 16 44 H 0.25 16.36 8.31 -92.71 -0.77 15.58 16 45 H 0.08 2.89 7.34 -2.38 -0.02 2.87 16 46 H 0.12 3.13 8.11 -2.39 -0.02 3.11 16 Total: -1.00 -108.64 379.37 2.78 -105.86 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.29 Total: 23.16 kcal Atomic # 6 Polarization: 23.65 SS G_CDS: 7.16 Total: 30.81 kcal Atomic # 7 Polarization: -136.13 SS G_CDS: -5.44 Total: -141.56 kcal Atomic # 8 Polarization: -69.18 SS G_CDS: -1.26 Total: -70.43 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.03 Total: 52.17 kcal Total: -108.64 2.78 -105.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201879978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.103 kcal (2) G-P(sol) polarization free energy of solvation -108.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds