Wall clock time and date at job start Tue Mar 31 2020 19:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35648 * 117.00356 * 2 1 4 4 C 1.39345 * 120.54006 * 0.02608 * 3 2 1 5 5 C 1.38303 * 118.43971 * 179.72440 * 4 3 2 6 6 C 1.38764 * 119.44595 * 0.49470 * 5 4 3 7 7 N 1.31376 * 121.06349 * 359.49280 * 6 5 4 8 8 C 1.32859 * 121.70031 * 0.25199 * 7 6 5 9 9 C 1.47831 * 119.78291 * 180.02562 * 8 7 6 10 10 O 1.21560 * 119.99547 * 186.39300 * 9 8 7 11 11 N 1.34778 * 120.00213 * 6.39495 * 9 8 7 12 12 C 1.47504 * 118.75822 * 186.31090 * 11 9 8 13 13 C 1.53572 * 111.02981 * 138.34566 * 12 11 9 14 14 C 1.51531 * 109.58464 * 320.02801 * 13 12 11 15 15 O 1.42151 * 108.75940 * 91.39286 * 14 13 12 16 16 C 1.38015 * 119.44116 * 272.77043 * 15 14 13 17 17 H 1.08999 * 109.47010 * 303.43094 * 16 15 14 18 18 C 1.53002 * 109.46894 * 183.43052 * 16 15 14 19 19 N 1.46497 * 109.46904 * 65.00336 * 18 16 15 20 20 C 1.36938 * 119.99845 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00349 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00027 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00097 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00127 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47160 * 90.00164 * 24 22 20 26 26 H 1.48505 * 109.47254 * 210.00029 * 24 22 20 27 27 H 1.48503 * 109.46956 * 329.99978 * 24 22 20 28 28 C 1.45121 * 118.75614 * 6.04274 * 11 9 8 29 29 H 1.09002 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46622 * 299.99790 * 1 2 3 31 31 H 1.09003 * 109.47105 * 59.99501 * 1 2 3 32 32 H 1.08001 * 120.77985 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.27439 * 180.26213 * 5 4 3 34 34 H 1.08002 * 119.46760 * 179.77034 * 6 5 4 35 35 H 1.09002 * 109.16795 * 258.74995 * 12 11 9 36 36 H 1.09002 * 109.16687 * 18.00549 * 12 11 9 37 37 H 1.09000 * 109.44706 * 80.05742 * 13 12 11 38 38 H 1.09000 * 109.45714 * 200.01015 * 13 12 11 39 39 H 1.08998 * 109.58728 * 211.17827 * 14 13 12 40 40 H 1.09001 * 109.59041 * 331.46868 * 14 13 12 41 41 H 1.08999 * 109.47045 * 185.00296 * 18 16 15 42 42 H 1.09001 * 109.47393 * 305.00256 * 18 16 15 43 43 H 0.97003 * 120.00351 * 359.97438 * 19 18 16 44 44 H 0.96996 * 119.99916 * 179.97438 * 23 22 20 45 45 H 1.08995 * 109.45963 * 29.32367 * 28 11 9 46 46 H 1.08994 * 109.45897 * 149.28789 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2971 2.3844 0.0005 5 6 1.9697 3.5928 0.0064 6 6 3.3573 3.6011 0.0010 7 7 4.0420 2.4798 0.0005 8 6 3.4410 1.2949 0.0000 9 6 4.2532 0.0597 0.0000 10 8 3.7129 -1.0229 -0.1176 11 7 5.5926 0.1338 0.1305 12 6 6.3890 -1.0994 -0.0140 13 6 7.6654 -0.8390 -0.8273 14 6 7.3529 0.0974 -1.9770 15 8 7.5736 1.4351 -1.5499 16 6 6.5540 2.1250 -0.9260 17 1 5.6775 2.1422 -1.5737 18 6 7.0071 3.5587 -0.6427 19 7 7.2306 4.2595 -1.9097 20 6 7.6431 5.5652 -1.9064 21 1 7.8041 6.0784 -0.9698 22 6 7.8553 6.2291 -3.1068 23 7 7.6596 5.6037 -4.2483 24 14 8.4187 8.0101 -3.1023 25 1 9.9028 8.0598 -3.0987 26 1 7.9035 8.6954 -4.3149 27 1 7.8975 8.6911 -1.8898 28 6 6.1973 1.4248 0.4018 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 0.2175 2.3528 0.0006 33 1 1.4196 4.5222 0.0112 34 1 3.8830 4.5446 0.0018 35 1 6.6634 -1.4661 0.9752 36 1 5.7898 -1.8549 -0.5221 37 1 8.4193 -0.3851 -0.1841 38 1 8.0441 -1.7824 -1.2205 39 1 8.0050 -0.1293 -2.8204 40 1 6.3121 -0.0259 -2.2762 41 1 6.2368 4.0771 -0.0717 42 1 7.9339 3.5403 -0.0693 43 1 7.0863 3.7985 -2.7509 44 1 7.8076 6.0677 -5.0871 45 1 5.4942 2.0455 0.9572 46 1 7.1027 1.2848 0.9922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201945489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:51 Heat of formation + Delta-G solvation = -26.823663 kcal Electronic energy + Delta-G solvation = -30617.219246 eV Core-core repulsion = 26509.602350 eV Total energy + Delta-G solvation = -4107.616895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27727 -39.83663 -38.30860 -38.19893 -35.17704 -34.63622 -33.25069 -32.12107 -31.10697 -30.65353 -28.55679 -27.70775 -26.60050 -25.33215 -24.24179 -23.01892 -22.57045 -21.41932 -20.78311 -19.73049 -18.23066 -17.62767 -17.12479 -17.07983 -16.36833 -16.31574 -16.03662 -15.47251 -15.42073 -14.70659 -14.66982 -14.44216 -14.20922 -14.03884 -13.72160 -13.34938 -13.20308 -13.07502 -12.94130 -12.58347 -12.30935 -12.11776 -11.99160 -11.73915 -11.71961 -11.49513 -11.12288 -10.83178 -10.75775 -10.61885 -10.25142 -10.07402 -9.95769 -9.80346 -9.61411 -9.31187 -9.10930 -8.77002 -8.63965 -8.27184 -6.77176 -5.64750 -2.91940 0.56492 1.08715 2.75987 2.88978 3.03683 3.49251 3.53990 3.55757 3.74772 4.09886 4.18734 4.38357 4.47972 4.67930 4.76671 4.85039 4.86506 4.90829 5.00737 5.08836 5.18776 5.22093 5.29081 5.44615 5.52407 5.58023 5.67569 5.68611 5.73536 5.81945 5.83209 5.89302 6.04099 6.17049 6.20532 6.31723 6.40433 6.47711 6.66174 6.83822 6.95420 7.00110 7.39363 7.69472 7.78433 8.20873 8.25645 8.53891 9.65070 10.26497 10.61829 11.58254 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.004087 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.235164 B = 6849.115731 C = 8685.567078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.276 6.276 3 C 0.133 3.867 4 C -0.177 4.177 5 C -0.103 4.103 6 C 0.065 3.935 7 N -0.401 5.401 8 C 0.036 3.964 9 C 0.568 3.432 10 O -0.524 6.524 11 N -0.593 5.593 12 C 0.112 3.888 13 C -0.165 4.165 14 C 0.075 3.925 15 O -0.374 6.374 16 C 0.100 3.900 17 H 0.053 0.947 18 C 0.172 3.828 19 N -0.726 5.726 20 C -0.233 4.233 21 H 0.069 0.931 22 C -0.016 4.016 23 N -0.933 5.933 24 Si 0.904 3.096 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.283 1.283 28 C 0.073 3.927 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.173 0.827 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.037 0.963 42 H 0.021 0.979 43 H 0.386 0.614 44 H 0.253 0.747 45 H 0.119 0.881 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.428 -11.814 11.378 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.186 6.186 3 C 0.083 3.917 4 C -0.204 4.204 5 C -0.123 4.123 6 C -0.095 4.095 7 N -0.114 5.114 8 C -0.101 4.101 9 C 0.355 3.645 10 O -0.400 6.400 11 N -0.325 5.325 12 C -0.009 4.009 13 C -0.203 4.203 14 C -0.002 4.002 15 O -0.293 6.293 16 C 0.040 3.960 17 H 0.071 0.929 18 C 0.044 3.956 19 N -0.370 5.370 20 C -0.364 4.364 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.735 3.265 25 H -0.219 1.219 26 H -0.220 1.220 27 H -0.209 1.209 28 C -0.051 4.051 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.190 0.810 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.039 0.961 43 H 0.219 0.781 44 H 0.063 0.937 45 H 0.136 0.864 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.500 -12.408 11.364 20.961 hybrid contribution -1.138 0.980 -0.354 1.543 sum -13.638 -11.428 11.009 20.924 Atomic orbital electron populations 1.23190 0.78722 1.04463 1.01201 1.86389 1.20767 1.24782 1.86676 1.19989 0.92217 0.85643 0.93894 1.21721 1.00907 0.91848 1.05923 1.22269 0.95925 0.98371 0.95759 1.23057 0.91379 0.97142 0.97951 1.68340 1.37809 0.97344 1.07870 1.20635 0.88400 0.93167 1.07946 1.17801 0.82080 0.87373 0.77204 1.90790 1.71434 1.27991 1.49761 1.47760 1.05604 1.09454 1.69702 1.21823 0.92528 0.86241 1.00339 1.22500 0.97568 1.01159 0.99073 1.22060 1.00537 0.82146 0.95429 1.86404 1.40573 1.25358 1.76932 1.22063 0.89975 0.92231 0.91732 0.92943 1.20542 0.97376 0.87090 0.90558 1.42258 1.81471 1.10873 1.02392 1.19224 1.36805 0.88012 0.92377 0.91275 1.24710 1.02919 0.98127 0.95374 1.69681 1.55883 1.36137 0.96467 0.86234 0.78403 0.85147 0.76666 1.21877 1.21975 1.20854 1.22904 0.99369 0.83111 0.99668 0.87821 0.92612 0.92498 0.83842 0.83894 0.81008 0.91760 0.89421 0.90118 0.89880 0.89547 0.93691 0.94542 0.96114 0.78079 0.93720 0.86356 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.83 101.05 0.99 1.14 16 2 O -0.28 -3.63 8.58 -40.50 -0.35 -3.98 16 3 C 0.13 1.76 6.71 -38.55 -0.26 1.50 16 4 C -0.18 -1.78 9.13 -39.15 -0.36 -2.14 16 5 C -0.10 -1.02 10.10 -39.36 -0.40 -1.41 16 6 C 0.06 0.80 11.17 -17.55 -0.20 0.61 16 7 N -0.40 -5.83 4.15 -9.71 -0.04 -5.87 16 8 C 0.04 0.55 6.54 -82.88 -0.54 0.01 16 9 C 0.57 9.32 7.59 -12.34 -0.09 9.23 16 10 O -0.52 -9.56 14.52 -16.54 -0.24 -9.80 16 11 N -0.59 -8.85 2.20 -173.92 -0.38 -9.23 16 12 C 0.11 1.44 6.12 -3.20 -0.02 1.42 16 13 C -0.16 -2.00 5.78 -27.18 -0.16 -2.16 16 14 C 0.08 1.15 6.37 36.41 0.23 1.38 16 15 O -0.37 -7.12 9.38 -26.53 -0.25 -7.37 16 16 C 0.10 1.81 1.81 -26.05 -0.05 1.77 16 17 H 0.05 1.06 7.04 -51.93 -0.37 0.69 16 18 C 0.17 3.57 5.92 -4.04 -0.02 3.54 16 19 N -0.73 -18.91 5.54 -59.91 -0.33 -19.24 16 20 C -0.23 -6.55 9.99 -15.06 -0.15 -6.70 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 23 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 24 Si 0.90 22.53 29.55 -169.99 -5.02 17.50 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 C 0.07 1.10 4.37 -4.10 -0.02 1.09 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.33 7.70 -51.93 -0.40 -0.07 16 31 H 0.06 0.37 7.70 -51.93 -0.40 -0.03 16 32 H 0.14 0.98 6.46 -52.49 -0.34 0.65 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.17 2.01 8.06 -52.49 -0.42 1.58 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.17 7.08 -51.93 -0.37 0.80 16 37 H 0.08 1.01 8.01 -51.93 -0.42 0.60 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.04 0.73 7.41 -51.93 -0.38 0.34 16 41 H 0.04 0.71 7.99 -51.93 -0.42 0.29 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.39 10.92 7.65 -40.82 -0.31 10.61 16 44 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.12 1.75 5.16 -52.68 -0.27 1.47 16 46 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -35.44 368.52 -8.07 -43.51 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.60 Total: 8.26 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -1.13 Total: 8.72 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.03 Total: -62.41 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.84 Total: -21.14 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.44 -8.07 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201945489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.689 kcal (2) G-P(sol) polarization free energy of solvation -35.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds