Wall clock time and date at job start Tue Mar 31 2020 19:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35648 * 117.00356 * 2 1 4 4 C 1.39345 * 120.54006 * 0.02608 * 3 2 1 5 5 C 1.38303 * 118.43971 * 179.72440 * 4 3 2 6 6 C 1.38764 * 119.44595 * 0.49470 * 5 4 3 7 7 N 1.31376 * 121.06349 * 359.49280 * 6 5 4 8 8 C 1.32859 * 121.70031 * 0.25199 * 7 6 5 9 9 C 1.47831 * 119.78291 * 180.02562 * 8 7 6 10 10 O 1.21560 * 119.99547 * 186.39300 * 9 8 7 11 11 N 1.34778 * 120.00213 * 6.39495 * 9 8 7 12 12 C 1.47504 * 118.75822 * 186.31090 * 11 9 8 13 13 C 1.53572 * 111.02981 * 138.34566 * 12 11 9 14 14 C 1.51531 * 109.58464 * 320.02801 * 13 12 11 15 15 O 1.42151 * 108.75940 * 91.39286 * 14 13 12 16 16 C 1.38015 * 119.44116 * 272.77043 * 15 14 13 17 17 H 1.08999 * 109.47010 * 303.43094 * 16 15 14 18 18 C 1.53002 * 109.46894 * 183.43052 * 16 15 14 19 19 N 1.46497 * 109.46904 * 65.00336 * 18 16 15 20 20 C 1.36938 * 119.99845 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00349 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00027 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00097 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00127 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47160 * 90.00164 * 24 22 20 26 26 H 1.48505 * 109.47254 * 210.00029 * 24 22 20 27 27 H 1.48503 * 109.46956 * 329.99978 * 24 22 20 28 28 C 1.45121 * 118.75614 * 6.04274 * 11 9 8 29 29 H 1.09002 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46622 * 299.99790 * 1 2 3 31 31 H 1.09003 * 109.47105 * 59.99501 * 1 2 3 32 32 H 1.08001 * 120.77985 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.27439 * 180.26213 * 5 4 3 34 34 H 1.08002 * 119.46760 * 179.77034 * 6 5 4 35 35 H 1.09002 * 109.16795 * 258.74995 * 12 11 9 36 36 H 1.09002 * 109.16687 * 18.00549 * 12 11 9 37 37 H 1.09000 * 109.44706 * 80.05742 * 13 12 11 38 38 H 1.09000 * 109.45714 * 200.01015 * 13 12 11 39 39 H 1.08998 * 109.58728 * 211.17827 * 14 13 12 40 40 H 1.09001 * 109.59041 * 331.46868 * 14 13 12 41 41 H 1.08999 * 109.47045 * 185.00296 * 18 16 15 42 42 H 1.09001 * 109.47393 * 305.00256 * 18 16 15 43 43 H 0.97003 * 120.00351 * 359.97438 * 19 18 16 44 44 H 0.96996 * 119.99916 * 179.97438 * 23 22 20 45 45 H 1.08995 * 109.45963 * 29.32367 * 28 11 9 46 46 H 1.08994 * 109.45897 * 149.28789 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2971 2.3844 0.0005 5 6 1.9697 3.5928 0.0064 6 6 3.3573 3.6011 0.0010 7 7 4.0420 2.4798 0.0005 8 6 3.4410 1.2949 0.0000 9 6 4.2532 0.0597 0.0000 10 8 3.7129 -1.0229 -0.1176 11 7 5.5926 0.1338 0.1305 12 6 6.3890 -1.0994 -0.0140 13 6 7.6654 -0.8390 -0.8273 14 6 7.3529 0.0974 -1.9770 15 8 7.5736 1.4351 -1.5499 16 6 6.5540 2.1250 -0.9260 17 1 5.6775 2.1422 -1.5737 18 6 7.0071 3.5587 -0.6427 19 7 7.2306 4.2595 -1.9097 20 6 7.6431 5.5652 -1.9064 21 1 7.8041 6.0784 -0.9698 22 6 7.8553 6.2291 -3.1068 23 7 7.6596 5.6037 -4.2483 24 14 8.4187 8.0101 -3.1023 25 1 9.9028 8.0598 -3.0987 26 1 7.9035 8.6954 -4.3149 27 1 7.8975 8.6911 -1.8898 28 6 6.1973 1.4248 0.4018 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 0.2175 2.3528 0.0006 33 1 1.4196 4.5222 0.0112 34 1 3.8830 4.5446 0.0018 35 1 6.6634 -1.4661 0.9752 36 1 5.7898 -1.8549 -0.5221 37 1 8.4193 -0.3851 -0.1841 38 1 8.0441 -1.7824 -1.2205 39 1 8.0050 -0.1293 -2.8204 40 1 6.3121 -0.0259 -2.2762 41 1 6.2368 4.0771 -0.0717 42 1 7.9339 3.5403 -0.0693 43 1 7.0863 3.7985 -2.7509 44 1 7.8076 6.0677 -5.0871 45 1 5.4942 2.0455 0.9572 46 1 7.1027 1.2848 0.9922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201945489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:49 Heat of formation + Delta-G solvation = -50.003740 kcal Electronic energy + Delta-G solvation = -30618.224409 eV Core-core repulsion = 26509.602350 eV Total energy + Delta-G solvation = -4108.622059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.30507 -40.94858 -39.51214 -39.20724 -36.64217 -36.20554 -34.63356 -33.28700 -32.61453 -31.80018 -30.09063 -28.40981 -27.79709 -26.86691 -25.48922 -24.29871 -23.89197 -22.63091 -22.23659 -20.83129 -19.18390 -19.07423 -18.68965 -18.19446 -17.65094 -17.45434 -16.95863 -16.74585 -16.64882 -16.24151 -15.87386 -15.65078 -15.27371 -15.14633 -14.99182 -14.68791 -14.58368 -14.42895 -14.28336 -13.75622 -13.53042 -13.46288 -13.25568 -13.02088 -12.72630 -12.66452 -12.43949 -12.34291 -12.30501 -12.05750 -11.86586 -11.73132 -11.48927 -11.19090 -10.88754 -10.78648 -10.55196 -10.20783 -9.70499 -9.40257 -8.89433 -7.85286 -5.13452 -0.37581 0.20730 1.51614 1.54455 1.62342 1.65247 1.87336 2.19065 2.62931 2.73708 2.85868 3.07427 3.48831 3.52714 3.70122 3.78503 3.87269 3.98804 4.05588 4.14565 4.17044 4.27104 4.30365 4.35209 4.37102 4.39856 4.52795 4.54561 4.65763 4.69429 4.75511 4.79793 4.86958 4.96508 4.98889 5.05490 5.14076 5.21663 5.31509 5.48998 5.54348 5.57288 6.15103 6.25080 6.35012 6.71855 6.84843 7.07638 7.41418 8.18358 8.42879 9.38914 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.004087 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.235164 B = 6849.115731 C = 8685.567078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.306 6.306 3 C 0.127 3.873 4 C -0.168 4.168 5 C -0.086 4.086 6 C 0.046 3.954 7 N -0.421 5.421 8 C -0.002 4.002 9 C 0.562 3.438 10 O -0.553 6.553 11 N -0.594 5.594 12 C 0.109 3.891 13 C -0.151 4.151 14 C 0.071 3.929 15 O -0.403 6.403 16 C 0.115 3.885 17 H 0.029 0.971 18 C 0.173 3.827 19 N -0.738 5.738 20 C -0.235 4.235 21 H 0.081 0.919 22 C -0.079 4.079 23 N -0.974 5.974 24 Si 0.973 3.027 25 H -0.292 1.292 26 H -0.298 1.298 27 H -0.263 1.263 28 C 0.088 3.912 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.181 0.819 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.029 0.971 41 H 0.055 0.945 42 H 0.019 0.981 43 H 0.370 0.630 44 H 0.248 0.752 45 H 0.124 0.876 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.578 -11.077 12.937 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.217 6.217 3 C 0.076 3.924 4 C -0.195 4.195 5 C -0.105 4.105 6 C -0.115 4.115 7 N -0.134 5.134 8 C -0.139 4.139 9 C 0.350 3.650 10 O -0.431 6.431 11 N -0.325 5.325 12 C -0.012 4.012 13 C -0.189 4.189 14 C -0.005 4.005 15 O -0.322 6.322 16 C 0.055 3.945 17 H 0.046 0.954 18 C 0.047 3.953 19 N -0.380 5.380 20 C -0.367 4.367 21 H 0.099 0.901 22 C -0.271 4.271 23 N -0.625 5.625 24 Si 0.803 3.197 25 H -0.219 1.219 26 H -0.225 1.225 27 H -0.188 1.188 28 C -0.036 4.036 29 H 0.132 0.868 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.198 0.802 33 H 0.199 0.801 34 H 0.192 0.808 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.132 0.868 39 H 0.113 0.887 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.201 0.799 44 H 0.057 0.943 45 H 0.142 0.858 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.648 -11.695 12.981 22.171 hybrid contribution -0.875 0.709 -0.832 1.400 sum -14.523 -10.986 12.149 21.891 Atomic orbital electron populations 1.23521 0.76141 1.05903 1.02914 1.86346 1.23566 1.25257 1.86540 1.20179 0.91947 0.86810 0.93499 1.22123 1.02551 0.90532 1.04249 1.22639 0.94898 0.99912 0.93073 1.23302 0.92964 0.96602 0.98636 1.68159 1.38853 0.97730 1.08643 1.20548 0.89471 0.92808 1.11033 1.18153 0.82519 0.87724 0.76605 1.90748 1.71982 1.29059 1.51336 1.47839 1.05552 1.09842 1.69266 1.21982 0.92352 0.85390 1.01494 1.22406 0.97197 1.01656 0.97648 1.22240 0.99860 0.81269 0.97149 1.86330 1.41123 1.27252 1.77498 1.21773 0.88577 0.91286 0.92827 0.95360 1.20682 0.97613 0.88549 0.88499 1.42460 1.81421 1.10652 1.03485 1.19680 1.35302 0.88898 0.92775 0.90123 1.25559 1.03966 1.02499 0.95058 1.69864 1.57857 1.37866 0.96929 0.85135 0.77522 0.80109 0.76976 1.21939 1.22527 1.18780 1.22691 0.99903 0.83224 0.97790 0.86756 0.90433 0.91050 0.80150 0.80125 0.80824 0.89746 0.90120 0.89958 0.86805 0.88736 0.95261 0.92748 0.96301 0.79916 0.94345 0.85825 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.83 113.37 1.11 1.24 16 2 O -0.31 -7.91 8.58 -68.73 -0.59 -8.49 16 3 C 0.13 3.26 6.71 22.94 0.15 3.41 16 4 C -0.17 -2.95 9.13 22.55 0.21 -2.74 16 5 C -0.09 -1.46 10.10 22.41 0.23 -1.23 16 6 C 0.05 1.11 11.17 84.89 0.95 2.06 16 7 N -0.42 -12.33 4.15 -184.63 -0.77 -13.09 16 8 C 0.00 -0.07 6.54 41.93 0.27 0.20 16 9 C 0.56 18.94 7.59 86.78 0.66 19.60 16 10 O -0.55 -20.82 14.52 16.99 0.25 -20.57 16 11 N -0.59 -17.88 2.20 -822.44 -1.81 -19.70 16 12 C 0.11 2.72 6.12 86.38 0.53 3.25 16 13 C -0.15 -3.51 5.78 30.30 0.18 -3.33 16 14 C 0.07 2.20 6.37 71.50 0.46 2.66 16 15 O -0.40 -15.63 9.38 -117.86 -1.11 -16.74 16 16 C 0.12 4.27 1.81 31.03 0.06 4.33 16 17 H 0.03 1.20 7.04 -2.39 -0.02 1.18 16 18 C 0.17 7.22 5.92 86.38 0.51 7.73 16 19 N -0.74 -39.09 5.54 -343.46 -1.90 -41.00 16 20 C -0.23 -13.21 9.99 84.03 0.84 -12.37 16 21 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 22 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 23 N -0.97 -61.34 13.06 21.65 0.28 -61.06 16 24 Si 0.97 46.37 29.55 68.60 2.03 48.39 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 27 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 28 C 0.09 2.65 4.37 87.08 0.38 3.03 16 29 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 0.69 7.70 -2.39 -0.02 0.67 16 31 H 0.07 0.74 7.70 -2.39 -0.02 0.72 16 32 H 0.18 1.71 6.46 -2.91 -0.02 1.69 16 33 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.17 3.94 8.06 -2.91 -0.02 3.92 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.08 2.15 7.08 -2.39 -0.02 2.13 16 37 H 0.08 1.93 8.01 -2.39 -0.02 1.91 16 38 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.03 0.99 7.41 -2.39 -0.02 0.97 16 41 H 0.05 2.09 7.99 -2.39 -0.02 2.07 16 42 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.37 21.66 7.65 -92.71 -0.71 20.95 16 44 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 45 H 0.12 3.66 5.16 -3.86 -0.02 3.64 16 46 H 0.08 2.29 8.11 -2.39 -0.02 2.27 16 Total: -1.00 -79.09 368.52 3.66 -75.43 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.29 Total: 33.15 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: 7.00 Total: 23.68 kcal Atomic # 7 Polarization: -130.64 SS G_CDS: -4.20 Total: -134.84 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -1.45 Total: -45.81 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -79.09 3.66 -75.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201945489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.421 kcal (2) G-P(sol) polarization free energy of solvation -79.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds