Wall clock time and date at job start Tue Mar 31 2020 19:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35524 * 116.99586 * 2 1 4 4 C 1.38814 * 120.89839 * 0.29433 * 3 2 1 5 5 C 1.38712 * 119.20019 * 180.24465 * 4 3 2 6 6 O 1.35520 * 119.47491 * 179.73403 * 5 4 3 7 7 N 1.32589 * 121.05177 * 359.45026 * 5 4 3 8 8 C 1.31615 * 121.97700 * 0.28073 * 7 5 4 9 9 C 1.39539 * 120.67037 * 359.97438 * 8 7 5 10 10 C 1.47341 * 120.55435 * 179.97438 * 9 8 7 11 11 O 1.21612 * 119.99836 * 126.02529 * 10 9 8 12 12 N 1.34776 * 120.00307 * 306.01999 * 10 9 8 13 13 C 1.46924 * 120.62882 * 3.88609 * 12 10 9 14 14 C 1.52759 * 109.01157 * 233.58320 * 13 12 10 15 15 C 1.53043 * 109.38183 * 305.58891 * 14 13 12 16 16 C 1.53000 * 109.45827 * 181.25829 * 15 14 13 17 17 N 1.46497 * 109.47241 * 64.93163 * 16 15 14 18 18 C 1.36942 * 119.99940 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00174 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99537 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00290 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99611 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46985 * 90.00289 * 22 20 18 24 24 H 1.48494 * 109.47271 * 209.99842 * 22 20 18 25 25 H 1.48494 * 109.47522 * 330.00591 * 22 20 18 26 26 C 1.53043 * 109.53777 * 61.23984 * 15 14 13 27 27 C 1.46929 * 120.63333 * 184.16891 * 12 10 9 28 28 H 1.08996 * 109.47023 * 299.99960 * 1 2 3 29 29 H 1.09001 * 109.47392 * 60.00150 * 1 2 3 30 30 H 1.09003 * 109.46865 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.40377 * 359.97438 * 4 3 2 32 32 H 0.96702 * 113.99657 * 269.72754 * 6 5 4 33 33 H 1.08000 * 119.66230 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.58910 * 353.42205 * 13 12 10 35 35 H 1.09003 * 109.58924 * 113.84234 * 13 12 10 36 36 H 1.08999 * 109.56934 * 185.55618 * 14 13 12 37 37 H 1.09000 * 109.35992 * 65.49983 * 14 13 12 38 38 H 1.08993 * 109.46395 * 301.21911 * 15 14 13 39 39 H 1.09005 * 109.46940 * 184.93394 * 16 15 14 40 40 H 1.09003 * 109.47035 * 304.93079 * 16 15 14 41 41 H 0.97001 * 119.99952 * 0.02562 * 17 16 15 42 42 H 0.97005 * 119.99781 * 180.02562 * 21 20 18 43 43 H 1.08996 * 109.49648 * 178.68323 * 26 15 14 44 44 H 1.09003 * 109.52276 * 58.59983 * 26 15 14 45 45 H 1.09001 * 109.58136 * 246.15990 * 27 12 10 46 46 H 1.09001 * 109.58066 * 6.43599 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 1.3065 2.3834 0.0061 5 6 1.9724 3.6002 0.0007 6 8 1.2577 4.7516 0.0012 7 7 3.2972 3.6548 0.0008 8 6 4.0396 2.5680 0.0004 9 6 3.4500 1.3033 0.0005 10 6 4.2836 0.0883 -0.0005 11 8 4.1174 -0.7638 0.8512 12 7 5.2301 -0.0789 -0.9453 13 6 5.5005 0.9782 -1.9292 14 6 5.4050 0.3864 -3.3343 15 6 6.3356 -0.8241 -3.4398 16 6 6.2650 -1.3993 -4.8558 17 7 6.7923 -0.4188 -5.8081 18 6 6.8303 -0.7143 -7.1447 19 1 6.4711 -1.6700 -7.4969 20 6 7.3305 0.2145 -8.0469 21 7 7.7688 1.3790 -7.6176 22 14 7.3830 -0.1888 -9.8701 23 1 6.1141 0.2435 -10.5094 24 1 8.5230 0.5227 -10.5019 25 1 7.5532 -1.6531 -10.0484 26 6 5.9019 -1.8923 -2.4334 27 6 6.0069 -1.3241 -1.0147 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2269 2.3513 0.0106 32 1 1.0502 5.0860 -0.8821 33 1 5.1160 2.6560 0.0001 34 1 4.7660 1.7761 -1.8196 35 1 6.5025 1.3770 -1.7711 36 1 5.7001 1.1370 -4.0674 37 1 4.3785 0.0739 -3.5258 38 1 7.3585 -0.5157 -3.2240 39 1 6.8590 -2.3118 -4.9074 40 1 5.2282 -1.6261 -5.1046 41 1 7.1153 0.4394 -5.4917 42 1 8.1180 2.0282 -8.2481 43 1 6.5506 -2.7634 -2.5253 44 1 4.8708 -2.1838 -2.6332 45 1 7.0511 -1.1168 -0.7803 46 1 5.6079 -2.0439 -0.2999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206319527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:48 Heat of formation + Delta-G solvation = -58.330343 kcal Electronic energy + Delta-G solvation = -29295.934755 eV Core-core repulsion = 25186.951628 eV Total energy + Delta-G solvation = -4108.983128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.48345 -39.89301 -39.11400 -37.68938 -37.11411 -34.93636 -32.98819 -32.06264 -31.59241 -30.51192 -30.26256 -28.04379 -26.78976 -24.75202 -23.70319 -23.47196 -22.99735 -21.80437 -20.47970 -19.69835 -19.31727 -18.05482 -17.53930 -17.39207 -17.00770 -16.39176 -16.03821 -15.63181 -15.10105 -14.98670 -14.92037 -14.75432 -14.30446 -14.13833 -13.78543 -13.60059 -13.47038 -13.23406 -13.00872 -12.66938 -12.40407 -12.33484 -12.24492 -11.98725 -11.92182 -11.80829 -11.15584 -11.00982 -10.85305 -10.45312 -10.40004 -10.31947 -10.22276 -9.99574 -9.71117 -9.65782 -9.52207 -9.19111 -8.88170 -8.63275 -6.92433 -5.78078 -3.06067 0.31157 0.82643 2.48242 2.61265 2.80045 3.15734 3.33965 3.42240 3.47759 3.49272 4.11281 4.19006 4.41167 4.57769 4.62650 4.70369 4.70688 4.83596 5.00363 5.01834 5.02759 5.10270 5.16957 5.17423 5.32811 5.36038 5.49239 5.55001 5.63865 5.79651 5.85193 5.94826 5.96763 6.08464 6.18660 6.27461 6.42503 6.45584 6.62229 6.65876 6.79837 6.91311 7.03174 7.30602 7.46878 7.69252 8.06050 8.41375 9.52565 10.10723 10.45481 11.44879 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012897 B = 0.002808 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.517252 B = 9970.555840 C =10876.512982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.289 6.289 3 C 0.229 3.771 4 C -0.283 4.283 5 C 0.364 3.636 6 O -0.480 6.480 7 N -0.524 5.524 8 C 0.195 3.805 9 C -0.223 4.223 10 C 0.575 3.425 11 O -0.530 6.530 12 N -0.600 5.600 13 C 0.099 3.901 14 C -0.124 4.124 15 C -0.094 4.094 16 C 0.158 3.842 17 N -0.732 5.732 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.126 4.126 27 C 0.115 3.885 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.152 0.848 32 H 0.407 0.593 33 H 0.175 0.825 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.019 0.981 40 H 0.017 0.983 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.548 1.591 17.634 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.198 6.198 3 C 0.173 3.827 4 C -0.305 4.305 5 C 0.187 3.813 6 O -0.288 6.288 7 N -0.246 5.246 8 C 0.036 3.964 9 C -0.229 4.229 10 C 0.362 3.638 11 O -0.407 6.407 12 N -0.334 5.334 13 C -0.024 4.024 14 C -0.163 4.163 15 C -0.113 4.113 16 C 0.031 3.969 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.165 4.165 27 C -0.007 4.007 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.169 0.831 32 H 0.267 0.733 33 H 0.192 0.808 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.037 0.963 40 H 0.035 0.965 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.238 1.588 18.526 22.825 hybrid contribution -0.626 -0.326 -1.603 1.751 sum -13.864 1.262 16.923 21.913 Atomic orbital electron populations 1.23266 0.77228 1.05007 1.01839 1.86205 1.22215 1.25213 1.86156 1.18987 0.90554 0.84840 0.88301 1.22058 1.02221 0.91588 1.14645 1.18963 0.86560 0.85028 0.90737 1.84699 1.71174 1.38604 1.34369 1.67241 1.06497 1.32947 1.17872 1.22691 1.00068 0.84447 0.89152 1.20346 0.91524 0.96379 1.14650 1.17636 0.79376 0.85344 0.81426 1.90790 1.68844 1.43779 1.37257 1.48071 1.36766 1.18119 1.30399 1.21997 1.01797 0.89709 0.88889 1.21841 1.00402 0.98954 0.95059 1.21311 0.99340 0.94798 0.95831 1.20665 0.96402 0.92659 0.87202 1.42374 1.75355 1.16793 1.03107 1.19234 1.34379 0.99892 0.83458 0.91290 1.24721 1.01854 0.96429 0.97994 1.69650 1.48117 1.07034 1.33481 0.86202 0.77140 0.77411 0.85522 1.21781 1.21772 1.20800 1.21916 1.02357 0.98618 0.93573 1.21655 0.95376 0.85563 0.98112 0.91979 0.91950 0.87352 0.83065 0.73329 0.80769 0.90053 0.90553 0.89231 0.91924 0.90827 0.96339 0.96499 0.78267 0.93541 0.90498 0.91595 0.91207 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.84 101.05 0.99 1.13 16 2 O -0.29 -3.35 9.83 -18.97 -0.19 -3.53 16 3 C 0.23 2.64 6.73 -38.36 -0.26 2.38 16 4 C -0.28 -2.65 9.02 -39.19 -0.35 -3.00 16 5 C 0.36 3.73 7.73 -17.05 -0.13 3.60 16 6 O -0.48 -3.98 13.54 -18.25 -0.25 -4.23 16 7 N -0.52 -6.07 10.36 -13.04 -0.14 -6.20 16 8 C 0.19 2.12 8.60 -17.16 -0.15 1.98 16 9 C -0.22 -2.75 4.90 -104.70 -0.51 -3.26 16 10 C 0.58 8.11 6.91 -12.56 -0.09 8.02 16 11 O -0.53 -9.09 16.26 4.56 0.07 -9.02 16 12 N -0.60 -7.58 2.98 -174.33 -0.52 -8.10 16 13 C 0.10 1.15 5.50 -3.93 -0.02 1.13 16 14 C -0.12 -1.79 5.23 -26.83 -0.14 -1.93 16 15 C -0.09 -1.42 2.19 -90.58 -0.20 -1.62 16 16 C 0.16 3.09 5.65 -4.04 -0.02 3.06 16 17 N -0.73 -17.98 5.32 -59.91 -0.32 -18.30 16 18 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 22 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C -0.13 -1.61 5.36 -26.61 -0.14 -1.75 16 27 C 0.11 1.39 6.42 -3.71 -0.02 1.37 16 28 H 0.06 0.32 7.69 -51.93 -0.40 -0.08 16 29 H 0.06 0.32 7.72 -51.93 -0.40 -0.09 16 30 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.15 1.00 6.45 -52.48 -0.34 0.66 16 32 H 0.41 1.35 9.06 45.56 0.41 1.76 16 33 H 0.18 1.53 7.36 -52.49 -0.39 1.14 16 34 H 0.08 0.88 4.74 -51.93 -0.25 0.64 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 1.47 7.15 -51.93 -0.37 1.10 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.38 9.75 6.84 -40.82 -0.28 9.47 16 42 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.15 7.03 -51.93 -0.36 0.79 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -35.76 375.25 -6.99 -42.75 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.72 Total: 6.91 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.29 Total: 3.87 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.25 Total: -59.57 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.36 Total: -16.78 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.76 -6.99 -42.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206319527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.577 kcal (2) G-P(sol) polarization free energy of solvation -35.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds