Wall clock time and date at job start Tue Mar 31 2020 19:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35524 * 116.99586 * 2 1 4 4 C 1.38814 * 120.89839 * 0.29433 * 3 2 1 5 5 C 1.38712 * 119.20019 * 180.24465 * 4 3 2 6 6 O 1.35520 * 119.47491 * 179.73403 * 5 4 3 7 7 N 1.32589 * 121.05177 * 359.45026 * 5 4 3 8 8 C 1.31615 * 121.97700 * 0.28073 * 7 5 4 9 9 C 1.39539 * 120.67037 * 359.97438 * 8 7 5 10 10 C 1.47341 * 120.55435 * 179.97438 * 9 8 7 11 11 O 1.21612 * 119.99836 * 126.02529 * 10 9 8 12 12 N 1.34776 * 120.00307 * 306.01999 * 10 9 8 13 13 C 1.46924 * 120.62882 * 3.88609 * 12 10 9 14 14 C 1.52759 * 109.01157 * 233.58320 * 13 12 10 15 15 C 1.53043 * 109.38183 * 305.58891 * 14 13 12 16 16 C 1.53000 * 109.45827 * 181.25829 * 15 14 13 17 17 N 1.46497 * 109.47241 * 64.93163 * 16 15 14 18 18 C 1.36942 * 119.99940 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00174 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99537 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00290 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99611 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46985 * 90.00289 * 22 20 18 24 24 H 1.48494 * 109.47271 * 209.99842 * 22 20 18 25 25 H 1.48494 * 109.47522 * 330.00591 * 22 20 18 26 26 C 1.53043 * 109.53777 * 61.23984 * 15 14 13 27 27 C 1.46929 * 120.63333 * 184.16891 * 12 10 9 28 28 H 1.08996 * 109.47023 * 299.99960 * 1 2 3 29 29 H 1.09001 * 109.47392 * 60.00150 * 1 2 3 30 30 H 1.09003 * 109.46865 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.40377 * 359.97438 * 4 3 2 32 32 H 0.96702 * 113.99657 * 269.72754 * 6 5 4 33 33 H 1.08000 * 119.66230 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.58910 * 353.42205 * 13 12 10 35 35 H 1.09003 * 109.58924 * 113.84234 * 13 12 10 36 36 H 1.08999 * 109.56934 * 185.55618 * 14 13 12 37 37 H 1.09000 * 109.35992 * 65.49983 * 14 13 12 38 38 H 1.08993 * 109.46395 * 301.21911 * 15 14 13 39 39 H 1.09005 * 109.46940 * 184.93394 * 16 15 14 40 40 H 1.09003 * 109.47035 * 304.93079 * 16 15 14 41 41 H 0.97001 * 119.99952 * 0.02562 * 17 16 15 42 42 H 0.97005 * 119.99781 * 180.02562 * 21 20 18 43 43 H 1.08996 * 109.49648 * 178.68323 * 26 15 14 44 44 H 1.09003 * 109.52276 * 58.59983 * 26 15 14 45 45 H 1.09001 * 109.58136 * 246.15990 * 27 12 10 46 46 H 1.09001 * 109.58066 * 6.43599 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 1.3065 2.3834 0.0061 5 6 1.9724 3.6002 0.0007 6 8 1.2577 4.7516 0.0012 7 7 3.2972 3.6548 0.0008 8 6 4.0396 2.5680 0.0004 9 6 3.4500 1.3033 0.0005 10 6 4.2836 0.0883 -0.0005 11 8 4.1174 -0.7638 0.8512 12 7 5.2301 -0.0789 -0.9453 13 6 5.5005 0.9782 -1.9292 14 6 5.4050 0.3864 -3.3343 15 6 6.3356 -0.8241 -3.4398 16 6 6.2650 -1.3993 -4.8558 17 7 6.7923 -0.4188 -5.8081 18 6 6.8303 -0.7143 -7.1447 19 1 6.4711 -1.6700 -7.4969 20 6 7.3305 0.2145 -8.0469 21 7 7.7688 1.3790 -7.6176 22 14 7.3830 -0.1888 -9.8701 23 1 6.1141 0.2435 -10.5094 24 1 8.5230 0.5227 -10.5019 25 1 7.5532 -1.6531 -10.0484 26 6 5.9019 -1.8923 -2.4334 27 6 6.0069 -1.3241 -1.0147 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2269 2.3513 0.0106 32 1 1.0502 5.0860 -0.8821 33 1 5.1160 2.6560 0.0001 34 1 4.7660 1.7761 -1.8196 35 1 6.5025 1.3770 -1.7711 36 1 5.7001 1.1370 -4.0674 37 1 4.3785 0.0739 -3.5258 38 1 7.3585 -0.5157 -3.2240 39 1 6.8590 -2.3118 -4.9074 40 1 5.2282 -1.6261 -5.1046 41 1 7.1153 0.4394 -5.4917 42 1 8.1180 2.0282 -8.2481 43 1 6.5506 -2.7634 -2.5253 44 1 4.8708 -2.1838 -2.6332 45 1 7.0511 -1.1168 -0.7803 46 1 5.6079 -2.0439 -0.2999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206319527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:48 Heat of formation + Delta-G solvation = -87.057010 kcal Electronic energy + Delta-G solvation = -29297.180437 eV Core-core repulsion = 25186.951628 eV Total energy + Delta-G solvation = -4110.228809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.31388 -40.88744 -39.84240 -38.87998 -37.86264 -36.54463 -34.52827 -33.05506 -32.56794 -31.97504 -31.38113 -28.66789 -28.20753 -26.00754 -24.93317 -24.57867 -23.94924 -23.17230 -21.69664 -20.53750 -20.25320 -19.20982 -18.82674 -18.38216 -18.09946 -17.22131 -16.96111 -16.68585 -16.35342 -16.05984 -15.76846 -15.73659 -15.53325 -15.40011 -15.31427 -15.03642 -14.37841 -14.31123 -14.14243 -13.98128 -13.56767 -13.50010 -13.08713 -12.99166 -12.91980 -12.74449 -12.61333 -12.55067 -12.21087 -12.15046 -11.94781 -11.67766 -11.56257 -11.33077 -11.21050 -10.90858 -10.61427 -10.26066 -10.05145 -9.68210 -8.96263 -7.93441 -5.21110 -0.47591 0.04050 1.47382 1.48603 1.49395 1.58004 1.87678 1.95079 2.37827 2.57350 2.57600 3.30223 3.39823 3.40041 3.66250 3.75812 3.78652 3.89503 3.94388 4.12074 4.15457 4.28450 4.30538 4.31716 4.35947 4.39677 4.42047 4.58243 4.61402 4.67028 4.72095 4.80955 4.87486 4.96886 5.03633 5.09551 5.14709 5.17207 5.28257 5.48517 5.54828 5.56122 5.97836 6.28134 6.29645 6.49245 6.73583 7.01925 7.36431 8.12719 8.37188 9.29779 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012897 B = 0.002808 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.517252 B = 9970.555840 C =10876.512982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.317 6.317 3 C 0.219 3.781 4 C -0.274 4.274 5 C 0.364 3.636 6 O -0.484 6.484 7 N -0.544 5.544 8 C 0.199 3.801 9 C -0.246 4.246 10 C 0.577 3.423 11 O -0.568 6.568 12 N -0.598 5.598 13 C 0.107 3.893 14 C -0.118 4.118 15 C -0.084 4.084 16 C 0.157 3.843 17 N -0.742 5.742 18 C -0.246 4.246 19 H 0.071 0.929 20 C -0.072 4.072 21 N -0.966 5.966 22 Si 0.970 3.030 23 H -0.288 1.288 24 H -0.295 1.295 25 H -0.272 1.272 26 C -0.115 4.115 27 C 0.116 3.884 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.179 0.821 32 H 0.428 0.572 33 H 0.192 0.808 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.019 0.981 40 H 0.012 0.988 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.088 0.912 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.375 1.718 17.897 23.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.226 6.226 3 C 0.163 3.837 4 C -0.296 4.296 5 C 0.187 3.813 6 O -0.296 6.296 7 N -0.266 5.266 8 C 0.040 3.960 9 C -0.252 4.252 10 C 0.365 3.635 11 O -0.447 6.447 12 N -0.329 5.329 13 C -0.015 4.015 14 C -0.156 4.156 15 C -0.102 4.102 16 C 0.031 3.969 17 N -0.385 5.385 18 C -0.378 4.378 19 H 0.089 0.911 20 C -0.264 4.264 21 N -0.616 5.616 22 Si 0.799 3.201 23 H -0.215 1.215 24 H -0.221 1.221 25 H -0.197 1.197 26 C -0.154 4.154 27 C -0.006 4.006 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.138 0.862 31 H 0.197 0.803 32 H 0.292 0.708 33 H 0.208 0.792 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.037 0.963 40 H 0.030 0.970 41 H 0.209 0.791 42 H 0.060 0.940 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.094 1.700 18.775 23.538 hybrid contribution -0.472 -0.379 -1.674 1.780 sum -14.566 1.321 17.101 22.503 Atomic orbital electron populations 1.23584 0.74962 1.06380 1.03329 1.86173 1.24720 1.25636 1.86113 1.19192 0.90587 0.85574 0.88322 1.22235 1.03440 0.90416 1.13521 1.19160 0.86412 0.85850 0.89865 1.84657 1.70727 1.37916 1.36303 1.67291 1.07378 1.33156 1.18821 1.22896 1.00803 0.83834 0.88425 1.20357 0.92037 0.96074 1.16765 1.17888 0.79201 0.85458 0.80948 1.90759 1.69886 1.45302 1.38777 1.48120 1.36393 1.18382 1.30049 1.21978 1.03281 0.89457 0.86803 1.21715 0.99424 0.98141 0.96323 1.21199 0.99756 0.95601 0.93692 1.20806 0.95467 0.91881 0.88753 1.42546 1.75442 1.17446 1.03049 1.19604 1.33389 0.99812 0.85023 0.91113 1.25492 1.02343 0.96528 1.02076 1.69792 1.49390 1.07899 1.34553 0.85199 0.76792 0.77551 0.80571 1.21473 1.22106 1.19701 1.21819 1.02098 0.98272 0.93198 1.21690 0.96309 0.85365 0.97224 0.90527 0.90318 0.86213 0.80331 0.70845 0.79178 0.88970 0.88662 0.91415 0.92949 0.90636 0.96268 0.97047 0.79054 0.93978 0.89052 0.92385 0.89342 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.84 113.37 1.12 1.24 16 2 O -0.32 -7.14 9.83 -87.60 -0.86 -8.00 16 3 C 0.22 4.86 6.73 23.06 0.16 5.02 16 4 C -0.27 -4.64 9.02 22.52 0.20 -4.43 16 5 C 0.36 6.83 7.73 84.69 0.65 7.48 16 6 O -0.48 -6.99 13.54 -88.23 -1.19 -8.18 16 7 N -0.54 -11.90 10.36 -307.96 -3.19 -15.10 16 8 C 0.20 4.14 8.60 85.04 0.73 4.87 16 9 C -0.25 -5.92 4.90 -19.92 -0.10 -6.02 16 10 C 0.58 16.04 6.91 86.64 0.60 16.64 16 11 O -0.57 -19.59 16.26 -3.40 -0.06 -19.64 16 12 N -0.60 -14.51 2.98 -823.71 -2.45 -16.96 16 13 C 0.11 2.37 5.50 86.22 0.47 2.85 16 14 C -0.12 -3.35 5.23 30.53 0.16 -3.19 16 15 C -0.08 -2.46 2.19 -10.77 -0.02 -2.49 16 16 C 0.16 6.10 5.65 86.38 0.49 6.59 16 17 N -0.74 -36.63 5.32 -343.45 -1.83 -38.46 16 18 C -0.25 -13.62 9.99 84.03 0.84 -12.78 16 19 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 20 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 21 N -0.97 -57.73 13.06 21.65 0.28 -57.45 16 22 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 26 C -0.12 -2.80 5.36 30.67 0.16 -2.63 16 27 C 0.12 2.65 6.42 86.36 0.55 3.20 16 28 H 0.08 0.64 7.69 -2.39 -0.02 0.63 16 29 H 0.08 0.63 7.72 -2.39 -0.02 0.61 16 30 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.18 1.86 6.45 -2.91 -0.02 1.84 16 32 H 0.43 1.85 9.06 -74.06 -0.67 1.18 16 33 H 0.19 3.08 7.36 -2.91 -0.02 3.06 16 34 H 0.09 1.90 4.74 -2.39 -0.01 1.88 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 2.25 7.15 -2.39 -0.02 2.23 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.38 19.41 6.84 -92.71 -0.63 18.78 16 42 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 43 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.09 2.11 7.03 -2.39 -0.02 2.09 16 Total: -1.00 -76.80 375.25 -1.06 -77.87 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -0.28 Total: 25.58 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 6.48 Total: 12.74 kcal Atomic # 7 Polarization: -120.77 SS G_CDS: -7.19 Total: -127.96 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -2.11 Total: -35.82 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -76.80 -1.06 -77.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206319527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.191 kcal (2) G-P(sol) polarization free energy of solvation -76.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds