Wall clock time and date at job start Tue Mar 31 2020 19:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35501 * 116.99846 * 2 1 4 4 C 1.39215 * 120.90006 * 359.96893 * 3 2 1 5 5 C 1.37902 * 119.38870 * 180.02562 * 4 3 2 6 6 N 1.32079 * 121.29184 * 0.02562 * 5 4 3 7 7 C 1.32185 * 121.98180 * 359.69880 * 6 5 4 8 8 O 1.35425 * 119.78036 * 180.29745 * 7 6 5 9 9 C 1.40294 * 120.43766 * 0.58347 * 7 6 5 10 10 C 1.47231 * 120.64869 * 179.70979 * 9 7 6 11 11 O 1.21621 * 120.00168 * 269.71948 * 10 9 7 12 12 N 1.34780 * 120.00489 * 89.72424 * 10 9 7 13 13 C 1.46919 * 120.63395 * 179.97438 * 12 10 9 14 14 C 1.53195 * 108.89273 * 126.29715 * 13 12 10 15 15 C 1.53346 * 109.14901 * 54.57640 * 14 13 12 16 16 C 1.53004 * 109.41904 * 178.67276 * 15 14 13 17 17 N 1.46500 * 109.47150 * 295.13157 * 16 15 14 18 18 C 1.36934 * 119.99724 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00570 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99789 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99915 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47119 * 90.00235 * 22 20 18 24 24 H 1.48504 * 109.47026 * 209.99971 * 22 20 18 25 25 H 1.48500 * 109.47048 * 329.99810 * 22 20 18 26 26 C 1.53034 * 109.61010 * 298.71225 * 15 14 13 27 27 C 1.46933 * 120.62602 * 359.97139 * 12 10 9 28 28 H 1.09003 * 109.47242 * 300.00467 * 1 2 3 29 29 H 1.08998 * 109.46827 * 60.00765 * 1 2 3 30 30 H 1.09006 * 109.46927 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.30756 * 0.05685 * 4 3 2 32 32 H 1.07999 * 119.35249 * 179.97438 * 5 4 3 33 33 H 0.96704 * 113.99418 * 270.28100 * 8 7 6 34 34 H 1.09002 * 109.58751 * 246.15665 * 13 12 10 35 35 H 1.08996 * 109.58750 * 6.43850 * 13 12 10 36 36 H 1.08997 * 109.49914 * 174.65962 * 14 13 12 37 37 H 1.09002 * 109.49585 * 294.75599 * 14 13 12 38 38 H 1.09001 * 109.42242 * 58.75065 * 15 14 13 39 39 H 1.09001 * 109.46592 * 55.13132 * 16 15 14 40 40 H 1.08997 * 109.47133 * 175.12697 * 16 15 14 41 41 H 0.96999 * 119.99704 * 359.97438 * 17 16 15 42 42 H 0.97003 * 120.00052 * 179.97438 * 21 20 18 43 43 H 1.08994 * 109.50232 * 301.42239 * 26 15 14 44 44 H 1.09007 * 109.52628 * 181.33900 * 26 15 14 45 45 H 1.08994 * 109.58580 * 353.42544 * 27 12 10 46 46 H 1.09006 * 109.57831 * 113.70037 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3043 2.3866 -0.0006 5 6 1.9626 3.5984 -0.0012 6 7 3.2818 3.6625 -0.0016 7 6 4.0355 2.5766 0.0044 8 8 5.3846 2.6943 0.0098 9 6 3.4471 1.3031 -0.0009 10 6 4.2822 0.0905 -0.0007 11 8 4.6268 -0.4108 -1.0538 12 7 4.6648 -0.4642 1.1666 13 6 5.4976 -1.6745 1.1829 14 6 6.7361 -1.4128 2.0457 15 6 6.2909 -0.9338 3.4327 16 6 7.5225 -0.7021 4.3105 17 7 8.2066 -1.9773 4.5384 18 6 9.3433 -2.0178 5.3008 19 1 9.7358 -1.1096 5.7339 20 6 9.9913 -3.2262 5.5172 21 7 9.5128 -4.3331 4.9899 22 14 11.5416 -3.2815 6.5579 23 1 11.1758 -3.5075 7.9792 24 1 12.4133 -4.3886 6.0890 25 1 12.2681 -1.9924 6.4326 26 6 5.5078 0.3741 3.2976 27 6 4.2569 0.1300 2.4470 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 0.2249 2.3528 -0.0002 32 1 1.3880 4.5129 -0.0021 33 1 5.7797 2.7305 -0.8721 34 1 4.9285 -2.5040 1.6026 35 1 5.8055 -1.9199 0.1666 36 1 7.3130 -2.3324 2.1426 37 1 7.3509 -0.6448 1.5762 38 1 5.6556 -1.6916 3.8912 39 1 8.2002 -0.0105 3.8101 40 1 7.2130 -0.2798 5.2665 41 1 7.8544 -2.7930 4.1491 42 1 9.9658 -5.1775 5.1407 43 1 6.1342 1.1252 2.8165 44 1 5.2124 0.7257 4.2862 45 1 3.7481 1.0766 2.2649 46 1 3.5847 -0.5516 2.9684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206875910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:53 Heat of formation + Delta-G solvation = -59.323339 kcal Electronic energy + Delta-G solvation = -29567.178053 eV Core-core repulsion = 25458.151866 eV Total energy + Delta-G solvation = -4109.026187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51734 -39.75501 -39.17013 -37.58380 -37.09193 -34.89492 -32.94249 -32.23936 -31.15749 -30.73071 -30.18386 -28.04116 -26.75613 -24.97491 -23.72180 -23.24711 -22.90869 -21.80522 -20.45263 -19.63848 -19.18364 -18.00062 -17.87386 -17.31314 -16.87431 -16.57470 -16.10502 -15.66043 -15.20070 -14.91327 -14.85843 -14.65979 -14.25372 -13.98957 -13.66606 -13.62077 -13.52503 -13.23096 -12.91216 -12.80886 -12.33622 -12.18354 -12.16753 -12.06512 -11.95997 -11.74265 -11.10959 -10.94992 -10.80261 -10.49056 -10.38248 -10.27744 -10.13228 -9.92470 -9.74423 -9.61354 -9.46971 -9.29868 -8.82922 -8.57920 -6.86915 -5.72783 -3.00646 0.36105 0.74096 2.42723 2.45191 2.90493 3.05849 3.42556 3.46306 3.51425 3.53225 4.02476 4.28636 4.40340 4.48703 4.60993 4.61517 4.62285 4.84799 4.92434 4.96631 5.05936 5.13466 5.16064 5.30527 5.40201 5.44256 5.55122 5.60718 5.68319 5.76302 5.86372 6.00085 6.07102 6.17137 6.24932 6.35125 6.44134 6.56966 6.58703 6.74273 6.85905 6.98541 7.08706 7.35536 7.46551 7.74124 8.07382 8.46638 9.57656 10.16405 10.51188 11.50289 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021666 B = 0.002533 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.041897 B =11052.432527 C =11476.354716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.299 6.299 3 C 0.213 3.787 4 C -0.275 4.275 5 C 0.172 3.828 6 N -0.522 5.522 7 C 0.384 3.616 8 O -0.469 6.469 9 C -0.224 4.224 10 C 0.584 3.416 11 O -0.538 6.538 12 N -0.591 5.591 13 C 0.111 3.889 14 C -0.123 4.123 15 C -0.093 4.093 16 C 0.159 3.841 17 N -0.732 5.732 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.125 4.125 27 C 0.115 3.885 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.149 0.851 32 H 0.169 0.831 33 H 0.410 0.590 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.019 0.981 40 H 0.018 0.982 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.054 14.508 -11.981 29.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.208 6.208 3 C 0.159 3.841 4 C -0.296 4.296 5 C 0.016 3.984 6 N -0.244 5.244 7 C 0.204 3.796 8 O -0.277 6.277 9 C -0.231 4.231 10 C 0.370 3.630 11 O -0.415 6.415 12 N -0.323 5.323 13 C -0.010 4.010 14 C -0.161 4.161 15 C -0.112 4.112 16 C 0.031 3.969 17 N -0.376 5.376 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.164 4.164 27 C -0.008 4.008 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.126 0.874 31 H 0.167 0.833 32 H 0.186 0.814 33 H 0.270 0.730 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.242 14.797 -11.841 29.221 hybrid contribution 0.144 -0.950 0.133 0.970 sum -22.098 13.847 -11.708 28.585 Atomic orbital electron populations 1.23256 0.76900 1.05016 1.01903 1.86115 1.22506 1.25634 1.86591 1.19079 0.90228 0.85307 0.89535 1.22172 1.01973 0.92567 1.12927 1.22431 0.88662 0.97329 0.89984 1.67335 1.07260 1.32092 1.17752 1.18811 0.84935 0.85340 0.90494 1.84707 1.13497 1.95028 1.34468 1.20316 0.91826 0.95726 1.15255 1.17487 0.79199 0.82468 0.83854 1.90794 1.56630 1.63160 1.30946 1.48028 1.50720 1.28072 1.05437 1.21760 0.91746 0.85354 1.02165 1.21973 0.96246 1.03208 0.94653 1.21356 0.97589 0.96345 0.95925 1.20660 0.91078 0.89995 0.95151 1.42378 1.29528 1.04160 1.61560 1.19237 1.01047 0.93520 1.23012 0.91275 1.24728 0.99534 0.95539 1.01302 1.69655 1.41465 0.98005 1.49217 0.86194 0.83068 0.76985 0.79986 1.21798 1.21804 1.20803 1.21904 0.96139 0.98707 0.99659 1.21700 0.97227 0.98027 0.83882 0.91855 0.91937 0.87389 0.83329 0.81439 0.72963 0.91279 0.89120 0.89303 0.91687 0.91058 0.96349 0.96448 0.78257 0.93569 0.91068 0.90712 0.90973 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.11 16 2 O -0.30 -2.97 10.03 -18.19 -0.18 -3.15 16 3 C 0.21 2.17 6.74 -38.32 -0.26 1.91 16 4 C -0.28 -1.91 9.09 -39.34 -0.36 -2.27 16 5 C 0.17 1.27 11.15 -17.57 -0.20 1.07 16 6 N -0.52 -5.56 10.37 -13.06 -0.14 -5.70 16 7 C 0.38 4.52 7.61 -16.63 -0.13 4.39 16 8 O -0.47 -5.40 13.02 -17.97 -0.23 -5.63 16 9 C -0.22 -2.78 3.67 -104.57 -0.38 -3.16 16 10 C 0.58 8.76 6.30 -12.61 -0.08 8.68 16 11 O -0.54 -9.70 16.52 5.26 0.09 -9.61 16 12 N -0.59 -8.35 2.97 -174.08 -0.52 -8.86 16 13 C 0.11 1.64 6.42 -3.71 -0.02 1.62 16 14 C -0.12 -2.00 5.27 -26.45 -0.14 -2.14 16 15 C -0.09 -1.52 2.19 -90.42 -0.20 -1.71 16 16 C 0.16 3.24 5.65 -4.04 -0.02 3.22 16 17 N -0.73 -18.69 5.32 -59.91 -0.32 -19.01 16 18 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 22 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 C -0.13 -1.69 5.36 -26.60 -0.14 -1.83 16 27 C 0.11 1.41 6.34 -3.69 -0.02 1.39 16 28 H 0.06 0.20 7.71 -51.93 -0.40 -0.20 16 29 H 0.06 0.21 7.71 -51.93 -0.40 -0.19 16 30 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.15 0.53 6.45 -52.49 -0.34 0.19 16 32 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.41 3.07 9.06 45.56 0.41 3.48 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.42 7.00 -51.93 -0.36 1.05 16 36 H 0.09 1.63 7.16 -51.93 -0.37 1.26 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.38 10.18 6.85 -40.82 -0.28 9.90 16 42 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 45 H 0.07 0.84 6.22 -51.93 -0.32 0.52 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -36.64 378.92 -6.93 -43.57 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.84 Total: 7.89 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.20 Total: 4.85 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -0.25 Total: -61.34 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.33 Total: -18.39 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.64 -6.93 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206875910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.750 kcal (2) G-P(sol) polarization free energy of solvation -36.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds