Wall clock time and date at job start Tue Mar 31 2020 19:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35501 * 116.99846 * 2 1 4 4 C 1.39215 * 120.90006 * 359.96893 * 3 2 1 5 5 C 1.37902 * 119.38870 * 180.02562 * 4 3 2 6 6 N 1.32079 * 121.29184 * 0.02562 * 5 4 3 7 7 C 1.32185 * 121.98180 * 359.69880 * 6 5 4 8 8 O 1.35425 * 119.78036 * 180.29745 * 7 6 5 9 9 C 1.40294 * 120.43766 * 0.58347 * 7 6 5 10 10 C 1.47231 * 120.64869 * 179.70979 * 9 7 6 11 11 O 1.21621 * 120.00168 * 269.71948 * 10 9 7 12 12 N 1.34780 * 120.00489 * 89.72424 * 10 9 7 13 13 C 1.46919 * 120.63395 * 179.97438 * 12 10 9 14 14 C 1.53195 * 108.89273 * 126.29715 * 13 12 10 15 15 C 1.53346 * 109.14901 * 54.57640 * 14 13 12 16 16 C 1.53004 * 109.41904 * 178.67276 * 15 14 13 17 17 N 1.46500 * 109.47150 * 295.13157 * 16 15 14 18 18 C 1.36934 * 119.99724 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00570 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99789 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99915 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47119 * 90.00235 * 22 20 18 24 24 H 1.48504 * 109.47026 * 209.99971 * 22 20 18 25 25 H 1.48500 * 109.47048 * 329.99810 * 22 20 18 26 26 C 1.53034 * 109.61010 * 298.71225 * 15 14 13 27 27 C 1.46933 * 120.62602 * 359.97139 * 12 10 9 28 28 H 1.09003 * 109.47242 * 300.00467 * 1 2 3 29 29 H 1.08998 * 109.46827 * 60.00765 * 1 2 3 30 30 H 1.09006 * 109.46927 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.30756 * 0.05685 * 4 3 2 32 32 H 1.07999 * 119.35249 * 179.97438 * 5 4 3 33 33 H 0.96704 * 113.99418 * 270.28100 * 8 7 6 34 34 H 1.09002 * 109.58751 * 246.15665 * 13 12 10 35 35 H 1.08996 * 109.58750 * 6.43850 * 13 12 10 36 36 H 1.08997 * 109.49914 * 174.65962 * 14 13 12 37 37 H 1.09002 * 109.49585 * 294.75599 * 14 13 12 38 38 H 1.09001 * 109.42242 * 58.75065 * 15 14 13 39 39 H 1.09001 * 109.46592 * 55.13132 * 16 15 14 40 40 H 1.08997 * 109.47133 * 175.12697 * 16 15 14 41 41 H 0.96999 * 119.99704 * 359.97438 * 17 16 15 42 42 H 0.97003 * 120.00052 * 179.97438 * 21 20 18 43 43 H 1.08994 * 109.50232 * 301.42239 * 26 15 14 44 44 H 1.09007 * 109.52628 * 181.33900 * 26 15 14 45 45 H 1.08994 * 109.58580 * 353.42544 * 27 12 10 46 46 H 1.09006 * 109.57831 * 113.70037 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3043 2.3866 -0.0006 5 6 1.9626 3.5984 -0.0012 6 7 3.2818 3.6625 -0.0016 7 6 4.0355 2.5766 0.0044 8 8 5.3846 2.6943 0.0098 9 6 3.4471 1.3031 -0.0009 10 6 4.2822 0.0905 -0.0007 11 8 4.6268 -0.4108 -1.0538 12 7 4.6648 -0.4642 1.1666 13 6 5.4976 -1.6745 1.1829 14 6 6.7361 -1.4128 2.0457 15 6 6.2909 -0.9338 3.4327 16 6 7.5225 -0.7021 4.3105 17 7 8.2066 -1.9773 4.5384 18 6 9.3433 -2.0178 5.3008 19 1 9.7358 -1.1096 5.7339 20 6 9.9913 -3.2262 5.5172 21 7 9.5128 -4.3331 4.9899 22 14 11.5416 -3.2815 6.5579 23 1 11.1758 -3.5075 7.9792 24 1 12.4133 -4.3886 6.0890 25 1 12.2681 -1.9924 6.4326 26 6 5.5078 0.3741 3.2976 27 6 4.2569 0.1300 2.4470 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 0.2249 2.3528 -0.0002 32 1 1.3880 4.5129 -0.0021 33 1 5.7797 2.7305 -0.8721 34 1 4.9285 -2.5040 1.6026 35 1 5.8055 -1.9199 0.1666 36 1 7.3130 -2.3324 2.1426 37 1 7.3509 -0.6448 1.5762 38 1 5.6556 -1.6916 3.8912 39 1 8.2002 -0.0105 3.8101 40 1 7.2130 -0.2798 5.2665 41 1 7.8544 -2.7930 4.1491 42 1 9.9658 -5.1775 5.1407 43 1 6.1342 1.1252 2.8165 44 1 5.2124 0.7257 4.2862 45 1 3.7481 1.0766 2.2649 46 1 3.5847 -0.5516 2.9684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206875910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:52 Heat of formation + Delta-G solvation = -89.162924 kcal Electronic energy + Delta-G solvation = -29568.471994 eV Core-core repulsion = 25458.151866 eV Total energy + Delta-G solvation = -4110.320129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.30002 -40.79264 -39.86193 -38.88163 -37.83572 -36.58847 -34.54423 -33.23244 -32.26325 -32.04135 -31.39329 -28.52032 -28.24153 -26.07028 -25.33324 -24.10994 -23.89624 -23.31750 -21.72315 -20.57679 -20.13090 -19.25087 -18.69541 -18.62502 -18.03833 -17.49372 -16.87664 -16.70018 -16.37407 -15.98560 -15.78989 -15.63134 -15.58592 -15.42970 -15.32037 -14.90935 -14.45172 -14.25597 -14.17399 -13.94102 -13.62102 -13.51742 -13.18629 -12.94311 -12.92819 -12.75214 -12.54935 -12.48267 -12.26970 -12.16683 -11.99734 -11.71151 -11.54425 -11.44469 -11.31131 -10.92162 -10.57860 -10.11826 -10.04309 -9.76437 -8.98515 -7.94771 -5.23034 -0.32636 0.06643 1.35451 1.46887 1.48682 1.57179 1.86251 1.87856 2.40495 2.56213 2.73224 3.23921 3.38534 3.65798 3.68343 3.75421 3.81251 3.83709 3.91701 4.03847 4.23011 4.27659 4.30055 4.31226 4.37253 4.39604 4.48496 4.55047 4.67842 4.70369 4.73840 4.82364 4.85551 4.93729 4.95136 5.06292 5.13430 5.22925 5.24260 5.46515 5.48596 5.53002 6.04229 6.25357 6.27941 6.39837 6.79522 6.95140 7.34269 8.10604 8.34650 9.28783 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021666 B = 0.002533 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.041897 B =11052.432527 C =11476.354716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.327 6.327 3 C 0.208 3.792 4 C -0.257 4.257 5 C 0.176 3.824 6 N -0.542 5.542 7 C 0.375 3.625 8 O -0.487 6.487 9 C -0.251 4.251 10 C 0.584 3.416 11 O -0.580 6.580 12 N -0.592 5.592 13 C 0.118 3.882 14 C -0.113 4.113 15 C -0.082 4.082 16 C 0.158 3.842 17 N -0.743 5.743 18 C -0.246 4.246 19 H 0.073 0.927 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.973 3.027 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.271 1.271 26 C -0.116 4.116 27 C 0.119 3.881 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.189 0.811 32 H 0.210 0.790 33 H 0.421 0.579 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.012 0.988 40 H 0.024 0.976 41 H 0.375 0.625 42 H 0.251 0.749 43 H 0.061 0.939 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.611 16.497 -11.287 32.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.152 3.848 4 C -0.278 4.278 5 C 0.021 3.979 6 N -0.265 5.265 7 C 0.195 3.805 8 O -0.297 6.297 9 C -0.259 4.259 10 C 0.372 3.628 11 O -0.461 6.461 12 N -0.323 5.323 13 C -0.004 4.004 14 C -0.151 4.151 15 C -0.100 4.100 16 C 0.032 3.968 17 N -0.386 5.386 18 C -0.377 4.377 19 H 0.091 0.909 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.802 3.198 23 H -0.212 1.212 24 H -0.222 1.222 25 H -0.196 1.196 26 C -0.154 4.154 27 C -0.003 4.003 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.134 0.866 31 H 0.206 0.794 32 H 0.226 0.774 33 H 0.283 0.717 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.030 0.970 40 H 0.042 0.958 41 H 0.208 0.792 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.113 0.887 45 H 0.103 0.897 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -24.830 16.838 -11.132 32.000 hybrid contribution 0.827 -1.507 -0.117 1.723 sum -24.003 15.331 -11.249 30.622 Atomic orbital electron populations 1.23605 0.74400 1.06318 1.03753 1.86086 1.25179 1.25993 1.86461 1.19263 0.89592 0.86542 0.89367 1.22554 1.03692 0.90932 1.10603 1.23201 0.87745 0.99172 0.87810 1.67412 1.08862 1.31513 1.18696 1.18864 0.84910 0.85550 0.91169 1.84650 1.14192 1.95106 1.35758 1.20188 0.92826 0.94459 1.18420 1.17945 0.78776 0.82908 0.83201 1.90754 1.58324 1.64646 1.32349 1.48107 1.50238 1.27677 1.06228 1.21580 0.91390 0.86354 1.01059 1.21808 0.96599 1.01507 0.95210 1.21235 0.96092 0.98087 0.94635 1.20803 0.92184 0.87758 0.96067 1.42574 1.29333 1.05579 1.61142 1.19628 1.01779 0.93663 1.22670 0.90908 1.25555 1.02839 0.95305 1.03067 1.69811 1.42909 0.98360 1.50867 0.85144 0.79300 0.77073 0.78271 1.21227 1.22169 1.19635 1.21823 0.96097 0.96511 1.00993 1.21776 0.96748 0.99024 0.82721 0.89725 0.90209 0.86612 0.79357 0.77397 0.71700 0.90120 0.90403 0.91817 0.92894 0.90890 0.97010 0.95822 0.79226 0.93994 0.92000 0.88689 0.89703 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.84 113.37 1.12 1.20 16 2 O -0.33 -5.90 10.03 -88.02 -0.88 -6.79 16 3 C 0.21 3.80 6.74 23.09 0.16 3.95 16 4 C -0.26 -2.59 9.09 22.42 0.20 -2.39 16 5 C 0.18 1.96 11.15 84.58 0.94 2.90 16 6 N -0.54 -10.54 10.37 -308.27 -3.20 -13.73 16 7 C 0.37 8.62 7.61 85.14 0.65 9.27 16 8 O -0.49 -11.47 13.02 -87.20 -1.13 -12.60 16 9 C -0.25 -6.09 3.67 -19.83 -0.07 -6.17 16 10 C 0.58 17.83 6.30 86.61 0.55 18.37 16 11 O -0.58 -21.86 16.52 -4.10 -0.07 -21.93 16 12 N -0.59 -16.74 2.97 -822.93 -2.45 -19.18 16 13 C 0.12 3.60 6.42 86.36 0.55 4.16 16 14 C -0.11 -3.83 5.27 30.78 0.16 -3.66 16 15 C -0.08 -2.64 2.19 -10.66 -0.02 -2.67 16 16 C 0.16 6.48 5.65 86.38 0.49 6.97 16 17 N -0.74 -38.58 5.32 -343.45 -1.83 -40.40 16 18 C -0.25 -14.06 9.99 84.04 0.84 -13.22 16 19 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 21 N -0.97 -60.11 13.06 21.65 0.28 -59.83 16 22 Si 0.97 47.01 29.55 68.60 2.03 49.03 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 C -0.12 -2.97 5.36 30.68 0.16 -2.81 16 27 C 0.12 2.77 6.34 86.37 0.55 3.31 16 28 H 0.08 0.19 7.71 -2.39 -0.02 0.17 16 29 H 0.08 0.24 7.71 -2.39 -0.02 0.22 16 30 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.19 0.30 6.45 -2.91 -0.02 0.28 16 32 H 0.21 0.49 8.06 -2.91 -0.02 0.46 16 33 H 0.42 6.82 9.06 -74.05 -0.67 6.15 16 34 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 2.58 7.00 -2.39 -0.02 2.56 16 36 H 0.06 2.48 7.16 -2.39 -0.02 2.46 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.38 20.49 6.85 -92.71 -0.63 19.85 16 42 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 43 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 45 H 0.08 1.82 6.22 -2.39 -0.01 1.81 16 46 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -81.26 378.92 -0.79 -82.05 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.28 Total: 28.10 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 6.74 Total: 15.28 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -7.19 Total: -133.15 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -2.09 Total: -41.32 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Total: -81.26 -0.79 -82.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206875910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.115 kcal (2) G-P(sol) polarization free energy of solvation -81.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds