Wall clock time and date at job start Tue Mar 31 2020 19:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35921 * 116.99724 * 2 1 4 4 C 1.38746 * 120.47068 * 359.97438 * 3 2 1 5 5 N 1.31813 * 120.67766 * 180.02562 * 4 3 2 6 6 C 1.31878 * 121.78302 * 0.02562 * 5 4 3 7 7 C 1.38212 * 120.88677 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.38475 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46930 * 90.00374 * 8 7 6 10 10 C 1.50701 * 109.47436 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99439 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00138 * 179.72535 * 10 9 8 13 13 C 1.46496 * 119.99727 * 180.27482 * 12 10 9 14 14 H 1.09001 * 110.89218 * 34.29975 * 13 12 10 15 15 C 1.54911 * 111.00884 * 270.41559 * 13 12 10 16 16 N 1.47462 * 104.81245 * 204.95095 * 15 13 12 17 17 C 1.36940 * 125.62843 * 204.04331 * 16 15 13 18 18 H 1.07999 * 120.00086 * 354.81563 * 17 16 15 19 19 C 1.38808 * 119.99926 * 174.80852 * 17 16 15 20 20 N 1.31613 * 120.00136 * 7.05860 * 19 17 16 21 21 Si 1.86806 * 120.00001 * 187.05689 * 19 17 16 22 22 H 1.48497 * 109.46900 * 94.98699 * 21 19 17 23 23 H 1.48492 * 109.47286 * 214.98880 * 21 19 17 24 24 H 1.48503 * 109.46780 * 334.98894 * 21 19 17 25 25 C 1.47019 * 108.72554 * 24.07548 * 16 15 13 26 26 C 1.54323 * 107.27058 * 358.97099 * 25 16 15 27 27 H 1.08998 * 110.72305 * 219.44764 * 26 25 16 28 28 O 1.42892 * 110.72282 * 96.17430 * 26 25 16 29 29 C 1.38574 * 119.22361 * 0.23212 * 7 6 5 30 30 H 1.08991 * 109.47043 * 60.00622 * 1 2 3 31 31 H 1.09006 * 109.46539 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47371 * 299.99766 * 1 2 3 33 33 H 1.07992 * 119.66388 * 0.02562 * 4 3 2 34 34 H 1.07997 * 119.55456 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.47990 * 330.00175 * 8 7 6 36 36 H 1.09003 * 109.47380 * 210.00007 * 8 7 6 37 37 H 1.09003 * 109.47211 * 59.99772 * 9 8 7 38 38 H 1.08994 * 109.47359 * 299.99946 * 9 8 7 39 39 H 0.97002 * 119.99737 * 0.27527 * 12 10 9 40 40 H 1.09004 * 110.36166 * 323.76078 * 15 13 12 41 41 H 1.09002 * 110.36399 * 86.07943 * 15 13 12 42 42 H 0.97011 * 120.00289 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.88131 * 239.55830 * 25 16 15 44 44 H 1.09000 * 110.01536 * 118.45952 * 25 16 15 45 45 H 0.96695 * 114.00225 * 66.47791 * 28 26 25 46 46 H 1.07998 * 120.81183 * 179.72147 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2999 2.3809 -0.0005 5 7 1.8940 3.5575 -0.0010 6 6 3.2078 3.6723 -0.0016 7 6 4.0178 2.5524 -0.0021 8 6 5.5178 2.6967 -0.0033 9 6 6.0266 2.7455 1.4388 10 6 7.5267 2.8892 1.4378 11 8 8.1295 2.9473 0.3869 12 7 8.1978 2.9592 2.6045 13 6 9.6555 3.1049 2.6033 14 1 9.9848 3.7124 1.7604 15 6 10.3520 1.7212 2.5960 16 7 11.6768 1.9627 3.1968 17 6 12.7950 1.1982 2.9964 18 1 12.7304 0.2879 2.4187 19 6 14.0116 1.5931 3.5355 20 7 14.0659 2.6234 4.3527 21 14 15.5719 0.6623 3.1012 22 1 16.2550 1.3413 1.9710 23 1 16.4750 0.6328 4.2796 24 1 15.2260 -0.7273 2.7078 25 6 11.5983 3.1595 4.0471 26 6 10.1560 3.6993 3.9463 27 1 10.1536 4.7887 3.9106 28 8 9.3618 3.2262 5.0359 29 6 3.4344 1.2955 -0.0070 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.2213 2.3268 -0.0005 34 1 3.6567 4.6545 -0.0024 35 1 5.7940 3.6173 -0.5173 36 1 5.9644 1.8456 -0.5174 37 1 5.7505 1.8248 1.9529 38 1 5.5801 3.5966 1.9530 39 1 7.7156 2.9130 3.4449 40 1 9.7870 1.0090 3.1974 41 1 10.4588 1.3558 1.5746 42 1 14.9162 2.8997 4.7292 43 1 12.3016 3.9129 3.6926 44 1 11.8249 2.8983 5.0808 45 1 9.6335 3.5684 5.8984 46 1 4.0429 0.4032 -0.0121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219978677.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:38 Heat of formation + Delta-G solvation = -61.827513 kcal Electronic energy + Delta-G solvation = -28015.102439 eV Core-core repulsion = 23905.967663 eV Total energy + Delta-G solvation = -4109.134776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.04709 -39.73102 -38.60779 -37.91948 -34.90088 -34.72379 -33.92511 -31.92248 -31.58256 -30.11222 -28.48561 -27.95557 -27.08883 -25.19993 -24.19606 -23.82500 -21.78525 -20.63329 -20.25906 -19.84354 -18.25208 -17.50784 -17.44869 -17.01927 -16.80434 -16.66909 -16.28851 -15.42140 -15.35637 -14.81110 -14.61881 -14.33463 -14.04267 -13.98459 -13.56765 -13.40709 -13.31779 -13.15654 -12.73311 -12.56356 -12.43226 -12.38984 -12.21925 -12.11155 -11.93448 -11.32268 -11.24579 -10.94768 -10.86408 -10.52439 -10.45813 -10.12915 -9.91331 -9.83749 -9.76859 -9.57352 -9.31267 -8.79698 -8.68987 -8.62488 -6.87959 -5.76976 -3.08650 0.72852 0.94771 2.72483 2.81871 3.29082 3.39930 3.45229 3.46632 3.49485 4.11788 4.26384 4.41996 4.49647 4.55230 4.61853 4.66224 4.67216 4.78151 4.81247 4.94175 5.00801 5.16668 5.22399 5.28916 5.37105 5.42517 5.52853 5.59657 5.61184 5.72273 5.87051 5.92361 6.01726 6.07904 6.16097 6.21760 6.61305 6.66574 6.78614 6.93497 7.31915 7.43489 7.60442 7.72119 7.81943 8.05603 8.19000 8.46862 9.16865 9.77269 10.42137 11.35697 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022586 B = 0.001926 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.415772 B =14533.136638 C =14981.399174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.312 6.312 3 C 0.079 3.921 4 C 0.009 3.991 5 N -0.449 5.449 6 C 0.065 3.935 7 C -0.088 4.088 8 C -0.062 4.062 9 C -0.134 4.134 10 C 0.508 3.492 11 O -0.544 6.544 12 N -0.709 5.709 13 C 0.139 3.861 14 H 0.103 0.897 15 C 0.132 3.868 16 N -0.601 5.601 17 C -0.225 4.225 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.925 5.925 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.153 3.847 26 C 0.068 3.932 27 H 0.061 0.939 28 O -0.568 6.568 29 C -0.106 4.106 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.407 0.593 40 H 0.025 0.975 41 H 0.045 0.955 42 H 0.253 0.747 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.379 0.621 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.644 1.138 -4.558 27.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.031 3.969 4 C -0.149 4.149 5 N -0.157 5.157 6 C -0.093 4.093 7 C -0.090 4.090 8 C -0.101 4.101 9 C -0.174 4.174 10 C 0.294 3.706 11 O -0.422 6.422 12 N -0.360 5.360 13 C 0.033 3.967 14 H 0.121 0.879 15 C 0.004 3.996 16 N -0.328 5.328 17 C -0.353 4.353 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.744 3.256 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.028 3.972 26 C 0.008 3.992 27 H 0.079 0.921 28 O -0.374 6.374 29 C -0.132 4.132 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.173 0.827 34 H 0.176 0.824 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.242 0.758 40 H 0.042 0.958 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.227 0.773 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -26.730 1.401 -5.723 27.371 hybrid contribution 1.206 -0.867 0.796 1.685 sum -25.524 0.534 -4.927 26.000 Atomic orbital electron populations 1.23128 0.77934 1.04444 1.01582 1.86101 1.21696 1.26087 1.88504 1.20084 0.93162 0.85733 0.97881 1.22877 1.00470 0.87301 1.04239 1.67539 1.12180 1.26426 1.09551 1.22636 0.88526 0.98845 0.99313 1.20823 0.97501 0.92821 0.97816 1.20312 0.88295 1.05289 0.96178 1.21629 0.92696 1.04691 0.98430 1.20575 0.89633 0.76364 0.84000 1.90721 1.70267 1.49993 1.31189 1.45806 1.07960 1.73587 1.08618 1.22336 0.78708 0.99086 0.96590 0.87892 1.21843 0.87308 0.93516 0.96909 1.44292 1.05439 1.30139 1.52892 1.19094 0.85002 1.02929 1.28278 0.90255 1.24813 0.97705 0.98391 0.99555 1.69927 1.24477 1.28666 1.34176 0.86072 0.83140 0.78955 0.77482 1.21542 1.21779 1.20585 1.21863 0.89116 0.89772 0.96459 1.23505 0.93570 0.96208 0.85953 0.92145 1.86241 1.58611 1.74729 1.17814 1.20901 0.91588 0.98716 1.02044 0.92386 0.87836 0.92347 0.82698 0.82352 0.89261 0.89441 0.88758 0.88744 0.75796 0.95761 0.93718 0.93718 0.92535 0.93118 0.77289 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.10 16 2 O -0.31 -2.64 10.51 -19.49 -0.20 -2.84 16 3 C 0.08 0.72 6.71 -39.07 -0.26 0.46 16 4 C 0.01 0.08 10.22 -17.37 -0.18 -0.10 16 5 N -0.45 -4.67 10.36 -13.13 -0.14 -4.80 16 6 C 0.06 0.60 10.85 -17.54 -0.19 0.41 16 7 C -0.09 -0.79 5.15 -104.51 -0.54 -1.33 16 8 C -0.06 -0.58 4.66 -27.88 -0.13 -0.71 16 9 C -0.13 -1.28 5.68 -27.88 -0.16 -1.43 16 10 C 0.51 7.16 7.83 -10.99 -0.09 7.07 16 11 O -0.54 -9.78 15.67 5.55 0.09 -9.70 16 12 N -0.71 -10.33 5.18 -51.72 -0.27 -10.59 16 13 C 0.14 2.53 3.25 -65.78 -0.21 2.32 16 14 H 0.10 2.01 7.63 -51.93 -0.40 1.62 16 15 C 0.13 2.88 6.92 -2.51 -0.02 2.86 16 16 N -0.60 -15.46 3.40 -170.04 -0.58 -16.04 16 17 C -0.22 -6.34 10.26 -15.06 -0.15 -6.50 16 18 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 19 C -0.01 -0.25 5.48 -17.43 -0.10 -0.34 16 20 N -0.92 -26.74 10.36 55.49 0.57 -26.17 16 21 Si 0.91 22.20 29.56 -169.99 -5.02 17.18 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.15 3.57 5.15 -3.07 -0.02 3.56 16 26 C 0.07 1.19 4.20 -24.89 -0.10 1.09 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 O -0.57 -8.81 12.14 -35.23 -0.43 -9.23 16 29 C -0.11 -0.98 9.81 -39.14 -0.38 -1.37 16 30 H 0.06 0.20 7.68 -51.93 -0.40 -0.20 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.20 7.68 -51.93 -0.40 -0.20 16 33 H 0.16 0.98 6.32 -52.49 -0.33 0.65 16 34 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.09 0.85 8.05 -51.93 -0.42 0.43 16 36 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.41 5.19 7.57 -40.82 -0.31 4.88 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.06 1.45 7.30 -51.93 -0.38 1.07 16 44 H 0.05 1.29 7.54 -51.93 -0.39 0.90 16 45 H 0.38 4.54 9.12 45.56 0.42 4.96 16 46 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 382.54 15.07 5.76 5.76 Total: -1.00 -34.82 382.54 -7.70 -42.53 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.95 Total: 6.82 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -1.54 Total: 7.09 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.41 Total: -57.61 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.55 Total: -21.77 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.82 -7.70 -42.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219978677.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.301 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds