Wall clock time and date at job start Tue Mar 31 2020 19:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35921 * 116.99724 * 2 1 4 4 C 1.38746 * 120.47068 * 359.97438 * 3 2 1 5 5 N 1.31813 * 120.67766 * 180.02562 * 4 3 2 6 6 C 1.31878 * 121.78302 * 0.02562 * 5 4 3 7 7 C 1.38212 * 120.88677 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.38475 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46930 * 90.00374 * 8 7 6 10 10 C 1.50701 * 109.47436 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99439 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00138 * 179.72535 * 10 9 8 13 13 C 1.46496 * 119.99727 * 180.27482 * 12 10 9 14 14 H 1.09001 * 110.89218 * 34.29975 * 13 12 10 15 15 C 1.54911 * 111.00884 * 270.41559 * 13 12 10 16 16 N 1.47462 * 104.81245 * 204.95095 * 15 13 12 17 17 C 1.36940 * 125.62843 * 204.04331 * 16 15 13 18 18 H 1.07999 * 120.00086 * 354.81563 * 17 16 15 19 19 C 1.38808 * 119.99926 * 174.80852 * 17 16 15 20 20 N 1.31613 * 120.00136 * 7.05860 * 19 17 16 21 21 Si 1.86806 * 120.00001 * 187.05689 * 19 17 16 22 22 H 1.48497 * 109.46900 * 94.98699 * 21 19 17 23 23 H 1.48492 * 109.47286 * 214.98880 * 21 19 17 24 24 H 1.48503 * 109.46780 * 334.98894 * 21 19 17 25 25 C 1.47019 * 108.72554 * 24.07548 * 16 15 13 26 26 C 1.54323 * 107.27058 * 358.97099 * 25 16 15 27 27 H 1.08998 * 110.72305 * 219.44764 * 26 25 16 28 28 O 1.42892 * 110.72282 * 96.17430 * 26 25 16 29 29 C 1.38574 * 119.22361 * 0.23212 * 7 6 5 30 30 H 1.08991 * 109.47043 * 60.00622 * 1 2 3 31 31 H 1.09006 * 109.46539 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47371 * 299.99766 * 1 2 3 33 33 H 1.07992 * 119.66388 * 0.02562 * 4 3 2 34 34 H 1.07997 * 119.55456 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.47990 * 330.00175 * 8 7 6 36 36 H 1.09003 * 109.47380 * 210.00007 * 8 7 6 37 37 H 1.09003 * 109.47211 * 59.99772 * 9 8 7 38 38 H 1.08994 * 109.47359 * 299.99946 * 9 8 7 39 39 H 0.97002 * 119.99737 * 0.27527 * 12 10 9 40 40 H 1.09004 * 110.36166 * 323.76078 * 15 13 12 41 41 H 1.09002 * 110.36399 * 86.07943 * 15 13 12 42 42 H 0.97011 * 120.00289 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.88131 * 239.55830 * 25 16 15 44 44 H 1.09000 * 110.01536 * 118.45952 * 25 16 15 45 45 H 0.96695 * 114.00225 * 66.47791 * 28 26 25 46 46 H 1.07998 * 120.81183 * 179.72147 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2999 2.3809 -0.0005 5 7 1.8940 3.5575 -0.0010 6 6 3.2078 3.6723 -0.0016 7 6 4.0178 2.5524 -0.0021 8 6 5.5178 2.6967 -0.0033 9 6 6.0266 2.7455 1.4388 10 6 7.5267 2.8892 1.4378 11 8 8.1295 2.9473 0.3869 12 7 8.1978 2.9592 2.6045 13 6 9.6555 3.1049 2.6033 14 1 9.9848 3.7124 1.7604 15 6 10.3520 1.7212 2.5960 16 7 11.6768 1.9627 3.1968 17 6 12.7950 1.1982 2.9964 18 1 12.7304 0.2879 2.4187 19 6 14.0116 1.5931 3.5355 20 7 14.0659 2.6234 4.3527 21 14 15.5719 0.6623 3.1012 22 1 16.2550 1.3413 1.9710 23 1 16.4750 0.6328 4.2796 24 1 15.2260 -0.7273 2.7078 25 6 11.5983 3.1595 4.0471 26 6 10.1560 3.6993 3.9463 27 1 10.1536 4.7887 3.9106 28 8 9.3618 3.2262 5.0359 29 6 3.4344 1.2955 -0.0070 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.2213 2.3268 -0.0005 34 1 3.6567 4.6545 -0.0024 35 1 5.7940 3.6173 -0.5173 36 1 5.9644 1.8456 -0.5174 37 1 5.7505 1.8248 1.9529 38 1 5.5801 3.5966 1.9530 39 1 7.7156 2.9130 3.4449 40 1 9.7870 1.0090 3.1974 41 1 10.4588 1.3558 1.5746 42 1 14.9162 2.8997 4.7292 43 1 12.3016 3.9129 3.6926 44 1 11.8249 2.8983 5.0808 45 1 9.6335 3.5684 5.8984 46 1 4.0429 0.4032 -0.0121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219978677.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:37 Heat of formation + Delta-G solvation = -89.079695 kcal Electronic energy + Delta-G solvation = -28016.284183 eV Core-core repulsion = 23905.967663 eV Total energy + Delta-G solvation = -4110.316520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.69857 -40.98374 -39.51357 -39.10004 -36.45132 -35.60773 -35.31104 -33.60494 -32.46750 -31.00742 -30.11499 -28.80862 -28.31928 -26.62617 -25.52317 -24.51788 -22.68311 -22.24717 -21.64451 -21.15364 -19.22854 -18.86209 -18.29373 -18.11639 -17.90368 -17.58828 -16.92356 -16.81184 -16.63513 -16.39192 -15.79445 -15.43896 -15.21533 -14.84469 -14.64180 -14.60689 -14.49591 -14.31416 -14.05113 -13.95273 -13.80021 -13.19284 -13.18097 -12.99832 -12.80452 -12.76385 -12.69717 -12.40228 -12.27468 -12.09688 -11.99327 -11.91274 -11.89294 -10.96413 -10.84025 -10.75411 -10.44539 -10.41767 -10.02607 -9.42933 -8.94966 -7.90795 -5.25196 0.06435 0.27330 1.44503 1.46813 1.55333 1.69369 2.13527 2.25059 2.48606 2.75965 3.19214 3.29196 3.48815 3.60948 3.66130 3.75011 3.85341 3.94697 3.97521 4.01041 4.09613 4.17142 4.28684 4.34700 4.39362 4.45720 4.49936 4.55618 4.67786 4.70664 4.76380 4.84344 4.92687 4.96341 5.08611 5.19549 5.32052 5.37222 5.44879 5.52035 5.55340 5.64612 6.14098 6.23494 6.66875 6.88559 6.94065 7.05876 7.34520 7.70361 8.34292 9.19575 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022586 B = 0.001926 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.415772 B =14533.136638 C =14981.399174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.074 3.926 4 C 0.006 3.994 5 N -0.470 5.470 6 C 0.058 3.942 7 C -0.084 4.084 8 C -0.056 4.056 9 C -0.122 4.122 10 C 0.508 3.492 11 O -0.586 6.586 12 N -0.699 5.699 13 C 0.152 3.848 14 H 0.090 0.910 15 C 0.132 3.868 16 N -0.622 5.622 17 C -0.247 4.247 18 H 0.076 0.924 19 C -0.060 4.060 20 N -0.946 5.946 21 Si 0.978 3.022 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.271 1.271 25 C 0.158 3.842 26 C 0.093 3.907 27 H 0.092 0.908 28 O -0.564 6.564 29 C -0.118 4.118 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.177 0.823 34 H 0.174 0.826 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.419 0.581 40 H 0.024 0.976 41 H 0.028 0.972 42 H 0.250 0.750 43 H 0.025 0.975 44 H 0.024 0.976 45 H 0.398 0.602 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.748 1.214 -4.226 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.026 3.974 4 C -0.152 4.152 5 N -0.179 5.179 6 C -0.100 4.100 7 C -0.086 4.086 8 C -0.094 4.094 9 C -0.161 4.161 10 C 0.296 3.704 11 O -0.466 6.466 12 N -0.351 5.351 13 C 0.045 3.955 14 H 0.108 0.892 15 C 0.005 3.995 16 N -0.349 5.349 17 C -0.376 4.376 18 H 0.094 0.906 19 C -0.254 4.254 20 N -0.595 5.595 21 Si 0.806 3.194 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.196 1.196 25 C 0.033 3.967 26 C 0.032 3.968 27 H 0.109 0.891 28 O -0.372 6.372 29 C -0.144 4.144 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.087 0.913 33 H 0.194 0.806 34 H 0.192 0.808 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.257 0.743 40 H 0.042 0.958 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.043 0.957 44 H 0.042 0.958 45 H 0.249 0.751 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -28.891 1.474 -5.362 29.421 hybrid contribution 1.777 -0.963 0.688 2.135 sum -27.114 0.510 -4.673 27.519 Atomic orbital electron populations 1.23426 0.75956 1.06007 1.02612 1.86083 1.23823 1.25838 1.88376 1.20165 0.93251 0.86195 0.97741 1.23227 1.01573 0.86876 1.03512 1.67580 1.12714 1.27158 1.10424 1.22908 0.88408 0.99611 0.99038 1.20687 0.96966 0.92790 0.98164 1.20206 0.88522 1.04690 0.96026 1.21626 0.88771 1.06721 0.99006 1.21380 0.91375 0.74718 0.82902 1.90712 1.71540 1.51674 1.32644 1.45676 1.06164 1.73583 1.09679 1.21888 0.80818 0.96285 0.96546 0.89202 1.21900 0.86286 0.95837 0.95488 1.44580 1.06164 1.30501 1.53679 1.19403 0.86443 1.03446 1.28312 0.90605 1.25624 1.00503 0.99610 0.99630 1.70119 1.24776 1.29811 1.34753 0.85067 0.79192 0.78140 0.76976 1.21350 1.21647 1.19580 1.21731 0.92465 0.88319 0.94232 1.23118 0.89897 0.97400 0.86371 0.89073 1.86203 1.57535 1.75024 1.18450 1.21086 0.92084 0.99050 1.02190 0.91360 0.86137 0.91266 0.80581 0.80847 0.89488 0.90652 0.87018 0.85966 0.74293 0.95815 0.95394 0.94094 0.95662 0.95805 0.75111 0.83401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.82 113.37 1.11 1.21 16 2 O -0.33 -5.08 10.51 -92.66 -0.97 -6.06 16 3 C 0.07 1.26 6.71 22.60 0.15 1.41 16 4 C 0.01 0.09 10.22 84.82 0.87 0.96 16 5 N -0.47 -9.01 10.36 -195.45 -2.02 -11.03 16 6 C 0.06 0.98 10.85 84.68 0.92 1.90 16 7 C -0.08 -1.39 5.15 -19.79 -0.10 -1.49 16 8 C -0.06 -0.97 4.66 29.85 0.14 -0.83 16 9 C -0.12 -2.00 5.68 29.85 0.17 -1.83 16 10 C 0.51 13.51 7.83 87.66 0.69 14.20 16 11 O -0.59 -20.87 15.67 -3.05 -0.05 -20.92 16 12 N -0.70 -19.03 5.18 -435.95 -2.26 -21.28 16 13 C 0.15 5.43 3.25 46.39 0.15 5.58 16 14 H 0.09 3.51 7.63 -2.39 -0.02 3.49 16 15 C 0.13 5.83 6.92 86.85 0.60 6.44 16 16 N -0.62 -32.78 3.40 -691.90 -2.35 -35.13 16 17 C -0.25 -14.28 10.26 84.03 0.86 -13.41 16 18 H 0.08 4.29 7.84 -2.91 -0.02 4.26 16 19 C -0.06 -3.45 5.48 84.86 0.46 -2.99 16 20 N -0.95 -55.95 10.36 21.65 0.22 -55.73 16 21 Si 0.98 46.22 29.56 68.60 2.03 48.25 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 C 0.16 7.49 5.15 86.73 0.45 7.94 16 26 C 0.09 3.14 4.20 31.79 0.13 3.27 16 27 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 28 O -0.56 -16.08 12.14 -148.98 -1.81 -17.89 16 29 C -0.12 -2.04 9.81 22.56 0.22 -1.81 16 30 H 0.07 0.32 7.68 -2.39 -0.02 0.31 16 31 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.07 0.32 7.68 -2.39 -0.02 0.31 16 33 H 0.18 1.86 6.32 -2.91 -0.02 1.85 16 34 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 35 H 0.09 1.55 8.05 -2.39 -0.02 1.53 16 36 H 0.07 1.50 8.05 -2.39 -0.02 1.48 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.12 1.41 8.14 -2.39 -0.02 1.40 16 39 H 0.42 9.43 7.57 -92.71 -0.70 8.73 16 40 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 43 H 0.03 1.34 7.30 -2.39 -0.02 1.32 16 44 H 0.02 1.24 7.54 -2.39 -0.02 1.22 16 45 H 0.40 8.46 9.12 -74.06 -0.68 7.78 16 46 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -77.12 382.54 -0.74 -77.86 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -0.36 Total: 21.41 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 6.82 Total: 20.53 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -6.41 Total: -123.18 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -2.83 Total: -44.86 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -77.12 -0.74 -77.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219978677.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.220 kcal (2) G-P(sol) polarization free energy of solvation -77.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds