Wall clock time and date at job start Tue Mar 31 2020 18:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99768 * 2 1 4 4 C 1.52996 * 109.47379 * 66.04175 * 3 2 1 5 5 C 1.52997 * 109.47131 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00072 * 180.02562 * 6 5 4 8 8 O 1.21773 * 120.00033 * 359.97438 * 7 6 5 9 9 C 1.41545 * 119.99929 * 180.02562 * 7 6 5 10 10 C 1.35630 * 120.00463 * 180.02562 * 9 7 6 11 11 C 1.41605 * 120.00435 * 180.02562 * 10 9 7 12 12 C 1.37946 * 126.10466 * 179.97438 * 11 10 9 13 13 C 1.40305 * 106.53013 * 179.97438 * 12 11 10 14 14 C 1.35161 * 107.20495 * 359.97438 * 13 12 11 15 15 O 1.34017 * 109.03046 * 359.77076 * 14 13 12 16 16 C 1.46901 * 111.00124 * 236.04713 * 2 1 3 17 17 C 1.50704 * 109.46627 * 293.95059 * 16 2 1 18 18 O 1.21290 * 120.00147 * 0.02562 * 17 16 2 19 19 N 1.34773 * 119.99843 * 180.02562 * 17 16 2 20 20 C 1.37094 * 120.00191 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00155 * 359.97438 * 20 19 17 22 22 C 1.38955 * 120.00222 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99891 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00177 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47010 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47284 * 119.99929 * 24 22 20 27 27 H 1.48504 * 109.47393 * 240.00593 * 24 22 20 28 28 H 1.09002 * 109.47070 * 60.00584 * 1 2 3 29 29 H 1.08996 * 109.47018 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47481 * 300.00163 * 1 2 3 31 31 H 1.09001 * 109.46874 * 306.04322 * 3 2 1 32 32 H 1.09004 * 109.46970 * 186.04455 * 3 2 1 33 33 H 1.09001 * 109.46997 * 60.00222 * 4 3 2 34 34 H 1.08996 * 109.47452 * 299.99795 * 4 3 2 35 35 H 1.09001 * 109.47289 * 60.00050 * 5 4 3 36 36 H 1.09004 * 109.47261 * 300.00306 * 5 4 3 37 37 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 38 38 H 1.08004 * 120.00062 * 0.02562 * 9 7 6 39 39 H 1.08000 * 119.99338 * 359.97438 * 10 9 7 40 40 H 1.08003 * 126.73238 * 359.97438 * 12 11 10 41 41 H 1.08000 * 126.40314 * 179.97438 * 13 12 11 42 42 H 1.08002 * 125.48084 * 180.02562 * 14 13 12 43 43 H 1.09000 * 109.47352 * 53.94853 * 16 2 1 44 44 H 1.09003 * 109.47098 * 173.95715 * 16 2 1 45 45 H 0.97003 * 119.99871 * 359.97438 * 19 17 16 46 46 H 0.96996 * 120.00083 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1802 3.4857 1.3184 6 7 1.8321 4.1425 2.5808 7 6 2.2137 5.4153 2.8059 8 8 2.8481 6.0194 1.9600 9 6 1.8778 6.0497 4.0258 10 6 2.2613 7.3308 4.2522 11 6 1.9258 7.9652 5.4729 12 6 2.2500 9.2566 5.8338 13 6 1.7183 9.4580 7.1165 14 6 1.1045 8.3098 7.4797 15 8 1.2262 7.4166 6.4880 16 6 1.9955 -0.7660 -1.1376 17 6 1.6370 -2.2204 -0.9727 18 8 1.0047 -2.5831 -0.0033 19 7 2.0190 -3.1182 -1.9026 20 6 1.6924 -4.4412 -1.7529 21 1 1.1294 -4.7642 -0.8897 22 6 2.0858 -5.3667 -2.7119 23 7 2.7712 -4.9738 -3.7619 24 14 1.6415 -7.1695 -2.5076 25 1 0.8732 -7.3505 -1.2497 26 1 0.8142 -7.6091 -3.6598 27 1 2.8832 -7.9821 -2.4510 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.5611 1.9273 -0.8310 32 1 3.0797 1.3444 -0.1082 33 1 2.0657 1.5017 2.1491 34 1 0.5471 2.0846 1.4264 35 1 1.7462 4.0418 0.4874 36 1 3.2645 3.4583 1.2103 37 1 1.3270 3.6611 3.2547 38 1 1.3161 5.5136 4.7766 39 1 2.8233 7.8668 3.5017 40 1 2.8044 9.9721 5.2446 41 1 1.7866 10.3616 7.7040 42 1 0.5943 8.1410 8.4165 43 1 1.5611 -0.3873 -2.0628 44 1 3.0798 -0.6611 -1.1756 45 1 2.5243 -2.8280 -2.6781 46 1 3.0461 -5.6199 -4.4312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231295764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:52 Heat of formation + Delta-G solvation = -34.036269 kcal Electronic energy + Delta-G solvation = -26388.846164 eV Core-core repulsion = 22280.916506 eV Total energy + Delta-G solvation = -4107.929657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.05749 -40.11480 -38.66573 -36.96956 -35.34722 -34.52490 -33.84769 -33.56167 -31.74885 -31.20764 -29.47936 -27.84843 -26.62316 -25.02936 -24.15435 -22.60909 -22.34436 -21.28082 -20.80624 -19.76244 -19.12621 -18.08804 -17.82784 -17.29869 -16.60094 -16.48487 -16.08466 -15.87729 -15.20713 -15.14974 -14.93357 -14.62877 -14.32735 -14.24375 -13.65140 -13.53185 -13.41901 -13.34116 -13.30789 -12.97187 -12.58705 -12.33303 -12.12084 -11.84672 -11.69209 -11.46650 -11.25204 -11.22974 -11.12441 -10.91948 -10.70816 -10.43110 -10.33358 -10.27496 -10.20948 -9.47478 -9.32932 -8.46513 -8.43789 -7.96425 -7.83809 -6.40542 -3.81212 -0.02906 1.62673 2.20674 2.42718 2.98683 3.12745 3.17075 3.27601 3.34732 3.92132 4.00475 4.21301 4.26005 4.39129 4.43674 4.66075 4.80830 4.84195 4.99395 5.07001 5.10760 5.13226 5.24418 5.26737 5.43058 5.48214 5.52097 5.56917 5.60741 5.70465 5.75049 5.76888 5.93347 5.94483 5.99487 6.02123 6.10388 6.21820 6.30340 6.52586 6.56869 7.23240 7.28514 7.40863 7.56621 7.94881 8.08139 8.63450 9.19670 9.56218 10.08116 10.77355 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.038905 B = 0.001289 C = 0.001263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.531463 B =21717.639313 C =22166.796768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.519 5.519 3 C 0.058 3.942 4 C -0.128 4.128 5 C 0.120 3.880 6 N -0.723 5.723 7 C 0.547 3.453 8 O -0.549 6.549 9 C -0.206 4.206 10 C 0.010 3.990 11 C -0.012 4.012 12 C -0.162 4.162 13 C -0.219 4.219 14 C -0.018 4.018 15 O -0.166 6.166 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.013 0.987 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.403 0.597 38 H 0.131 0.869 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.207 0.793 43 H 0.047 0.953 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 28.087 17.312 33.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.243 5.243 3 C -0.071 4.071 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.374 5.374 7 C 0.338 3.662 8 O -0.429 6.429 9 C -0.227 4.227 10 C -0.010 4.010 11 C -0.061 4.061 12 C -0.181 4.181 13 C -0.238 4.238 14 C -0.088 4.088 15 O -0.061 6.061 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.032 0.968 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.237 0.763 38 H 0.149 0.851 39 H 0.178 0.822 40 H 0.175 0.825 41 H 0.172 0.828 42 H 0.224 0.776 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.787 27.578 17.597 32.763 hybrid contribution -0.341 -0.390 -0.770 0.928 sum -2.128 27.189 16.826 32.045 Atomic orbital electron populations 1.22575 0.86884 1.04416 0.98878 1.61547 1.08663 1.11264 1.42811 1.22005 1.00469 0.88924 0.95704 1.21779 1.01761 0.93485 0.99569 1.21351 1.00770 0.92691 0.85617 1.45945 1.57442 1.13763 1.20265 1.16973 0.79927 0.81832 0.87518 1.90848 1.40299 1.64567 1.47231 1.22096 1.05220 0.96765 0.98600 1.20681 0.94606 0.94302 0.91397 1.19898 1.02070 0.93605 0.90504 1.22407 1.03068 0.95655 0.97007 1.21821 1.04271 1.00147 0.97588 1.24372 1.03008 0.88289 0.93083 1.84109 1.57842 1.40715 1.23429 1.21867 1.00708 0.94125 0.91868 1.19747 0.85403 0.86671 0.85214 1.90478 1.43921 1.80171 1.31659 1.41874 1.49427 1.07368 1.21478 1.19750 1.32823 0.82305 1.07901 0.87870 1.25254 0.96839 1.00538 0.95310 1.69619 1.38106 1.35652 1.10971 0.85810 0.78201 0.81984 0.78404 1.19224 1.20804 1.20760 0.96812 0.88644 0.92117 0.94877 0.90569 0.90150 0.91096 0.91403 0.91136 0.76263 0.85123 0.82165 0.82514 0.82836 0.77606 0.93452 0.89361 0.77494 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.96 60.07 0.54 0.86 16 2 N -0.52 -8.51 4.50 -244.36 -1.10 -9.61 16 3 C 0.06 0.71 4.96 -3.83 -0.02 0.69 16 4 C -0.13 -1.29 5.25 -26.73 -0.14 -1.43 16 5 C 0.12 1.16 5.67 -4.04 -0.02 1.14 16 6 N -0.72 -6.41 5.55 -63.24 -0.35 -6.76 16 7 C 0.55 5.77 7.56 -15.00 -0.11 5.65 16 8 O -0.55 -7.73 16.11 5.12 0.08 -7.65 16 9 C -0.21 -1.69 9.41 -39.25 -0.37 -2.06 16 10 C 0.01 0.08 9.39 -39.23 -0.37 -0.29 16 11 C -0.01 -0.09 6.84 -38.41 -0.26 -0.35 16 12 C -0.16 -1.01 10.90 -38.91 -0.42 -1.44 16 13 C -0.22 -1.13 10.87 -39.90 -0.43 -1.56 16 14 C -0.02 -0.09 12.06 29.64 0.36 0.27 16 15 O -0.17 -1.24 10.18 4.71 0.05 -1.19 16 16 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 17 C 0.44 10.48 7.47 -10.98 -0.08 10.40 16 18 O -0.58 -15.50 13.91 5.55 0.08 -15.42 16 19 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 20 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 24 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.10 1.87 5.82 -51.93 -0.30 1.57 16 30 H 0.06 0.83 6.47 -51.93 -0.34 0.49 16 31 H 0.03 0.39 8.12 -51.93 -0.42 -0.04 16 32 H 0.08 0.89 7.93 -51.93 -0.41 0.47 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.69 6.55 -51.93 -0.34 0.35 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.40 2.60 8.43 -40.82 -0.34 2.25 16 38 H 0.13 0.85 7.72 -52.48 -0.41 0.45 16 39 H 0.16 1.20 7.46 -52.49 -0.39 0.81 16 40 H 0.16 0.67 8.06 -52.48 -0.42 0.25 16 41 H 0.15 0.45 8.06 -52.49 -0.42 0.02 16 42 H 0.21 0.24 8.06 -52.49 -0.42 -0.18 16 43 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 44 H 0.09 1.43 7.93 -51.93 -0.41 1.02 16 45 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 394.09 15.07 5.94 5.94 Total: -1.00 -34.70 394.09 -7.85 -42.55 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.58 Total: 9.64 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -1.61 Total: 4.71 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.78 Total: -54.60 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: 0.21 Total: -24.26 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.70 -7.85 -42.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231295764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.509 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds