Wall clock time and date at job start Tue Mar 31 2020 18:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99768 * 2 1 4 4 C 1.52996 * 109.47379 * 66.04175 * 3 2 1 5 5 C 1.52997 * 109.47131 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00072 * 180.02562 * 6 5 4 8 8 O 1.21773 * 120.00033 * 359.97438 * 7 6 5 9 9 C 1.41545 * 119.99929 * 180.02562 * 7 6 5 10 10 C 1.35630 * 120.00463 * 180.02562 * 9 7 6 11 11 C 1.41605 * 120.00435 * 180.02562 * 10 9 7 12 12 C 1.37946 * 126.10466 * 179.97438 * 11 10 9 13 13 C 1.40305 * 106.53013 * 179.97438 * 12 11 10 14 14 C 1.35161 * 107.20495 * 359.97438 * 13 12 11 15 15 O 1.34017 * 109.03046 * 359.77076 * 14 13 12 16 16 C 1.46901 * 111.00124 * 236.04713 * 2 1 3 17 17 C 1.50704 * 109.46627 * 293.95059 * 16 2 1 18 18 O 1.21290 * 120.00147 * 0.02562 * 17 16 2 19 19 N 1.34773 * 119.99843 * 180.02562 * 17 16 2 20 20 C 1.37094 * 120.00191 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00155 * 359.97438 * 20 19 17 22 22 C 1.38955 * 120.00222 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99891 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00177 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47010 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47284 * 119.99929 * 24 22 20 27 27 H 1.48504 * 109.47393 * 240.00593 * 24 22 20 28 28 H 1.09002 * 109.47070 * 60.00584 * 1 2 3 29 29 H 1.08996 * 109.47018 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47481 * 300.00163 * 1 2 3 31 31 H 1.09001 * 109.46874 * 306.04322 * 3 2 1 32 32 H 1.09004 * 109.46970 * 186.04455 * 3 2 1 33 33 H 1.09001 * 109.46997 * 60.00222 * 4 3 2 34 34 H 1.08996 * 109.47452 * 299.99795 * 4 3 2 35 35 H 1.09001 * 109.47289 * 60.00050 * 5 4 3 36 36 H 1.09004 * 109.47261 * 300.00306 * 5 4 3 37 37 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 38 38 H 1.08004 * 120.00062 * 0.02562 * 9 7 6 39 39 H 1.08000 * 119.99338 * 359.97438 * 10 9 7 40 40 H 1.08003 * 126.73238 * 359.97438 * 12 11 10 41 41 H 1.08000 * 126.40314 * 179.97438 * 13 12 11 42 42 H 1.08002 * 125.48084 * 180.02562 * 14 13 12 43 43 H 1.09000 * 109.47352 * 53.94853 * 16 2 1 44 44 H 1.09003 * 109.47098 * 173.95715 * 16 2 1 45 45 H 0.97003 * 119.99871 * 359.97438 * 19 17 16 46 46 H 0.96996 * 120.00083 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1802 3.4857 1.3184 6 7 1.8321 4.1425 2.5808 7 6 2.2137 5.4153 2.8059 8 8 2.8481 6.0194 1.9600 9 6 1.8778 6.0497 4.0258 10 6 2.2613 7.3308 4.2522 11 6 1.9258 7.9652 5.4729 12 6 2.2500 9.2566 5.8338 13 6 1.7183 9.4580 7.1165 14 6 1.1045 8.3098 7.4797 15 8 1.2262 7.4166 6.4880 16 6 1.9955 -0.7660 -1.1376 17 6 1.6370 -2.2204 -0.9727 18 8 1.0047 -2.5831 -0.0033 19 7 2.0190 -3.1182 -1.9026 20 6 1.6924 -4.4412 -1.7529 21 1 1.1294 -4.7642 -0.8897 22 6 2.0858 -5.3667 -2.7119 23 7 2.7712 -4.9738 -3.7619 24 14 1.6415 -7.1695 -2.5076 25 1 0.8732 -7.3505 -1.2497 26 1 0.8142 -7.6091 -3.6598 27 1 2.8832 -7.9821 -2.4510 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.5611 1.9273 -0.8310 32 1 3.0797 1.3444 -0.1082 33 1 2.0657 1.5017 2.1491 34 1 0.5471 2.0846 1.4264 35 1 1.7462 4.0418 0.4874 36 1 3.2645 3.4583 1.2103 37 1 1.3270 3.6611 3.2547 38 1 1.3161 5.5136 4.7766 39 1 2.8233 7.8668 3.5017 40 1 2.8044 9.9721 5.2446 41 1 1.7866 10.3616 7.7040 42 1 0.5943 8.1410 8.4165 43 1 1.5611 -0.3873 -2.0628 44 1 3.0798 -0.6611 -1.1756 45 1 2.5243 -2.8280 -2.6781 46 1 3.0461 -5.6199 -4.4312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231295764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:51 Heat of formation + Delta-G solvation = -59.845348 kcal Electronic energy + Delta-G solvation = -26389.965329 eV Core-core repulsion = 22280.916506 eV Total energy + Delta-G solvation = -4109.048823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.50389 -40.92181 -40.35887 -38.29308 -36.34403 -35.78554 -35.16753 -34.00572 -33.27851 -32.66097 -30.08708 -29.29283 -27.64322 -26.64204 -25.15226 -23.57814 -22.83048 -22.11884 -21.57369 -20.96089 -20.41644 -19.83618 -18.64054 -17.92843 -17.82696 -17.09556 -17.05288 -16.94245 -16.56813 -16.42175 -16.17606 -15.68266 -15.66675 -15.39918 -15.08214 -14.80830 -14.71423 -13.92956 -13.74959 -13.70120 -13.53600 -13.47539 -13.36323 -13.11763 -13.01898 -12.79282 -12.70267 -12.49955 -12.37323 -12.31249 -12.10391 -11.72179 -11.62802 -11.45022 -11.13727 -10.85756 -10.26465 -10.12549 -9.98325 -9.18524 -8.95666 -8.45297 -5.93740 -0.59764 1.15476 1.37306 1.42446 1.56576 1.70756 2.01799 2.07345 2.21720 2.31705 2.42302 2.84096 3.21841 3.44552 3.71765 3.97322 3.98010 4.04667 4.06840 4.14090 4.16575 4.27697 4.34767 4.41864 4.50764 4.56547 4.62021 4.64777 4.68468 4.76877 4.80513 4.88607 5.01134 5.09325 5.11428 5.20172 5.21756 5.29747 5.42798 5.45555 5.53373 5.90163 6.07879 6.09028 6.24323 6.54129 6.62596 7.14892 7.20669 7.58581 8.14519 8.72447 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.038905 B = 0.001289 C = 0.001263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.531463 B =21717.639313 C =22166.796768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.538 5.538 3 C 0.058 3.942 4 C -0.114 4.114 5 C 0.127 3.873 6 N -0.715 5.715 7 C 0.546 3.454 8 O -0.593 6.593 9 C -0.222 4.222 10 C 0.023 3.977 11 C -0.045 4.045 12 C -0.158 4.158 13 C -0.232 4.232 14 C -0.011 4.011 15 O -0.181 6.181 16 C 0.057 3.943 17 C 0.441 3.559 18 O -0.614 6.614 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.027 0.973 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.416 0.584 38 H 0.146 0.854 39 H 0.158 0.842 40 H 0.172 0.828 41 H 0.177 0.823 42 H 0.243 0.757 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.118 29.398 18.426 34.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.262 5.262 3 C -0.070 4.070 4 C -0.152 4.152 5 C 0.003 3.997 6 N -0.366 5.366 7 C 0.338 3.662 8 O -0.477 6.477 9 C -0.243 4.243 10 C 0.003 3.997 11 C -0.093 4.093 12 C -0.178 4.178 13 C -0.251 4.251 14 C -0.079 4.079 15 O -0.077 6.077 16 C -0.074 4.074 17 C 0.229 3.771 18 O -0.500 6.500 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.197 1.197 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.252 0.748 38 H 0.164 0.836 39 H 0.176 0.824 40 H 0.189 0.811 41 H 0.194 0.806 42 H 0.259 0.741 43 H 0.084 0.916 44 H 0.127 0.873 45 H 0.229 0.771 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.985 28.894 18.713 34.482 hybrid contribution -0.301 -0.642 -0.982 1.211 sum -2.286 28.252 17.732 33.434 Atomic orbital electron populations 1.22461 0.86928 1.02177 1.00719 1.61509 1.08865 1.13568 1.42254 1.22089 1.00905 0.86775 0.97245 1.21625 1.02097 0.93186 0.98299 1.21204 1.00272 0.92370 0.85901 1.45863 1.57032 1.13403 1.20293 1.17292 0.79176 0.81983 0.87711 1.90820 1.42544 1.65591 1.48719 1.22011 1.06930 0.97138 0.98226 1.20735 0.93384 0.94133 0.91495 1.19936 1.04061 0.94399 0.90931 1.22797 1.02033 0.95328 0.97610 1.22194 1.04276 1.01248 0.97383 1.25210 1.01691 0.87703 0.93332 1.84100 1.58085 1.41632 1.23930 1.21746 1.02113 0.90193 0.93394 1.20795 0.83675 0.88801 0.83877 1.90456 1.45121 1.81467 1.32973 1.41944 1.50077 1.07058 1.22190 1.19700 1.34291 0.84080 1.08046 0.90305 1.26018 0.96274 1.04271 0.94667 1.69679 1.38211 1.37093 1.11303 0.84881 0.78233 0.77019 0.78267 1.19754 1.19654 1.19673 0.95423 0.92809 0.89822 0.93616 0.89782 0.90509 0.90404 0.91785 0.91843 0.74770 0.83593 0.82442 0.81088 0.80600 0.74120 0.91575 0.87276 0.77074 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 8.96 127.69 1.14 1.92 16 2 N -0.54 -16.90 4.50 -927.02 -4.17 -21.07 16 3 C 0.06 1.29 4.96 86.30 0.43 1.72 16 4 C -0.11 -2.09 5.25 30.59 0.16 -1.92 16 5 C 0.13 2.32 5.67 86.38 0.49 2.81 16 6 N -0.71 -12.05 5.55 -472.18 -2.62 -14.67 16 7 C 0.55 11.48 7.56 85.06 0.64 12.12 16 8 O -0.59 -17.01 16.11 -4.58 -0.07 -17.08 16 9 C -0.22 -3.61 9.41 22.48 0.21 -3.40 16 10 C 0.02 0.35 9.39 22.50 0.21 0.57 16 11 C -0.04 -0.65 6.84 23.03 0.16 -0.49 16 12 C -0.16 -1.77 10.90 22.70 0.25 -1.52 16 13 C -0.23 -1.87 10.87 22.06 0.24 -1.63 16 14 C -0.01 -0.08 12.06 67.11 0.81 0.73 16 15 O -0.18 -2.49 10.18 -6.06 -0.06 -2.55 16 16 C 0.06 1.97 5.45 85.56 0.47 2.43 16 17 C 0.44 21.10 7.47 87.66 0.66 21.75 16 18 O -0.61 -33.87 13.91 -3.06 -0.04 -33.92 16 19 N -0.58 -29.71 5.29 -306.98 -1.62 -31.33 16 20 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 23 N -0.92 -50.03 13.05 21.66 0.28 -49.75 16 24 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 2.14 5.82 -2.39 -0.01 2.13 16 30 H 0.08 2.15 6.47 -2.39 -0.02 2.14 16 31 H 0.05 0.94 8.12 -2.39 -0.02 0.92 16 32 H 0.08 1.77 7.93 -2.38 -0.02 1.75 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.34 6.55 -2.39 -0.02 1.32 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.42 4.81 8.43 -92.71 -0.78 4.03 16 38 H 0.15 1.81 7.72 -2.91 -0.02 1.78 16 39 H 0.16 2.45 7.46 -2.91 -0.02 2.43 16 40 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 41 H 0.18 0.52 8.06 -2.91 -0.02 0.49 16 42 H 0.24 -0.25 8.06 -2.91 -0.02 -0.27 16 43 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 44 H 0.11 3.34 7.93 -2.39 -0.02 3.32 16 45 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 46 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -76.52 394.09 0.37 -76.15 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: -0.50 Total: 32.30 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 7.14 Total: 16.75 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -8.13 Total: -116.82 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -0.18 Total: -53.54 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -76.52 0.37 -76.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231295764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.306 kcal (2) G-P(sol) polarization free energy of solvation -76.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds