Wall clock time and date at job start Tue Mar 31 2020 18:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46497 * 120.00016 * 2 1 4 4 C 1.53001 * 109.46872 * 269.99995 * 3 2 1 5 5 H 1.08991 * 112.75211 * 75.76983 * 4 3 2 6 6 C 1.53511 * 113.47729 * 206.62095 * 4 3 2 7 7 C 1.53509 * 83.58097 * 140.78733 * 6 4 3 8 8 N 1.47482 * 87.93075 * 333.97682 * 7 6 4 9 9 C 1.46903 * 111.00337 * 138.70013 * 8 7 6 10 10 C 1.50706 * 109.46659 * 74.02911 * 9 8 7 11 11 O 1.21289 * 120.00471 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99559 * 180.02562 * 10 9 8 13 13 C 1.37101 * 119.99811 * 180.02562 * 12 10 9 14 14 H 1.07996 * 119.99959 * 359.97438 * 13 12 10 15 15 C 1.38951 * 119.99754 * 180.02562 * 13 12 10 16 16 N 1.31408 * 120.00079 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99800 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47151 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47342 * 119.99891 * 17 15 13 20 20 H 1.48500 * 109.46808 * 239.99755 * 17 15 13 21 21 C 1.34779 * 119.99946 * 179.97438 * 2 1 3 22 22 O 1.21278 * 120.00071 * 180.02562 * 21 2 1 23 23 C 1.50702 * 119.99777 * 0.02562 * 21 2 1 24 24 C 1.50707 * 109.46552 * 180.02562 * 23 21 2 25 25 C 1.41388 * 126.57299 * 269.97403 * 24 23 21 26 26 C 1.34517 * 106.83576 * 180.02562 * 25 24 23 27 27 O 1.34310 * 108.41865 * 359.74121 * 26 25 24 28 28 C 1.34295 * 109.47916 * 0.43837 * 27 26 25 29 29 H 1.08997 * 109.47063 * 270.00333 * 1 2 3 30 30 H 1.08998 * 109.46454 * 30.00617 * 1 2 3 31 31 H 1.09003 * 109.46698 * 150.00546 * 1 2 3 32 32 H 1.08994 * 109.47559 * 29.99614 * 3 2 1 33 33 H 1.08993 * 109.47420 * 150.00019 * 3 2 1 34 34 H 1.09002 * 114.16979 * 254.43816 * 6 4 3 35 35 H 1.09003 * 114.16902 * 27.13760 * 6 4 3 36 36 H 1.08998 * 113.47724 * 219.21110 * 7 6 4 37 37 H 1.09002 * 113.47800 * 88.73701 * 7 6 4 38 38 H 1.08992 * 109.47279 * 194.02684 * 9 8 7 39 39 H 1.08996 * 109.46901 * 314.03219 * 9 8 7 40 40 H 0.96999 * 120.00082 * 0.02562 * 12 10 9 41 41 H 0.97006 * 119.99926 * 179.97438 * 16 15 13 42 42 H 1.08991 * 109.47301 * 60.00314 * 23 21 2 43 43 H 1.08999 * 109.47159 * 299.99495 * 23 21 2 44 44 H 1.07992 * 126.58200 * 0.02562 * 25 24 23 45 45 H 1.08001 * 125.79062 * 180.02562 * 26 25 24 46 46 H 1.08002 * 125.79286 * 179.83073 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 1.5626 2.1174 -1.9223 6 6 3.6943 2.5992 -1.5996 7 6 3.8979 1.7906 -2.8885 8 7 3.1444 0.6923 -2.2551 9 6 2.2219 0.0664 -3.2118 10 6 3.0037 -0.7812 -4.1822 11 8 4.2104 -0.8568 -4.0860 12 7 2.3619 -1.4553 -5.1569 13 6 3.0729 -2.2268 -6.0394 14 1 4.1474 -2.2941 -5.9537 15 6 2.4112 -2.9212 -7.0447 16 7 1.1039 -2.8389 -7.1492 17 14 3.3800 -3.9730 -8.2467 18 1 4.8258 -3.8983 -7.9160 19 1 2.9222 -5.3824 -8.1517 20 1 3.1622 -3.4738 -9.6282 21 6 2.1390 -1.1672 0.0005 22 8 3.3517 -1.1673 0.0010 23 6 1.3854 -2.4723 0.0005 24 6 2.3648 -3.6177 0.0018 25 6 2.9128 -4.2589 -1.1330 26 6 3.7350 -5.2213 -0.6776 27 8 3.7184 -5.1933 0.6651 28 6 2.8847 -4.2268 1.0826 29 1 -0.3633 0.0001 1.0276 30 1 -0.3632 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5138 32 1 1.6086 2.0284 0.5137 33 1 3.1499 1.1384 0.5138 34 1 3.4706 3.6532 -1.7646 35 1 4.4607 2.4329 -0.8426 36 1 4.9410 1.5440 -3.0861 37 1 3.3940 2.2198 -3.7545 38 1 1.5104 -0.5599 -2.6738 39 1 1.6839 0.8412 -3.7578 40 1 1.3968 -1.3945 -5.2341 41 1 0.6420 -3.3235 -7.8513 42 1 0.7592 -2.5303 -0.8896 43 1 0.7585 -2.5299 0.8903 44 1 2.7101 -4.0216 -2.1668 45 1 4.3140 -5.8983 -1.2882 46 1 2.6715 -3.9775 2.1116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233874182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:51 Heat of formation + Delta-G solvation = -29.457957 kcal Electronic energy + Delta-G solvation = -30325.147714 eV Core-core repulsion = 26217.416587 eV Total energy + Delta-G solvation = -4107.731127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.43910 -41.63511 -40.28666 -39.47416 -36.30646 -35.95394 -34.92259 -33.35714 -32.17076 -31.43840 -30.08698 -28.42698 -27.56122 -27.04561 -25.35351 -24.27693 -22.53630 -21.65072 -21.13499 -20.59122 -19.99071 -19.91549 -18.34463 -17.93855 -17.79006 -17.12808 -17.00510 -16.76776 -16.64912 -16.41917 -15.95506 -15.62085 -15.52577 -15.39915 -14.94343 -14.28023 -14.16210 -14.02493 -13.77795 -13.74282 -13.58439 -13.54758 -13.39476 -13.01977 -12.98516 -12.83945 -12.59484 -12.46006 -12.36361 -12.29943 -12.16899 -11.90611 -11.57760 -11.46859 -10.87993 -10.40644 -10.38324 -10.03717 -9.73139 -9.41860 -9.29322 -8.49712 -5.97959 0.87774 1.32163 1.37173 1.51361 1.59184 1.91588 2.02065 2.24514 2.26822 2.34598 2.90840 3.16129 3.32925 3.59010 3.79416 3.86438 3.93763 3.96038 4.11715 4.18701 4.24734 4.27163 4.36064 4.41468 4.47186 4.49429 4.52782 4.61525 4.63000 4.78864 4.83265 4.86362 4.97377 5.03212 5.05082 5.11836 5.26318 5.28390 5.37153 5.45929 5.56893 5.81043 5.92446 6.18184 6.18787 6.57942 6.60350 7.10681 7.50341 7.52235 8.10315 8.68078 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008424 B = 0.004851 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.224284 B = 5770.194970 C = 7924.419600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.617 5.617 3 C 0.138 3.862 4 C 0.008 3.992 5 H 0.098 0.902 6 C -0.113 4.113 7 C -0.003 4.003 8 N -0.450 5.450 9 C 0.034 3.966 10 C 0.442 3.558 11 O -0.618 6.618 12 N -0.573 5.573 13 C -0.330 4.330 14 H 0.071 0.929 15 C -0.009 4.009 16 N -0.918 5.918 17 Si 0.988 3.012 18 H -0.278 1.278 19 H -0.268 1.268 20 H -0.268 1.268 21 C 0.507 3.493 22 O -0.554 6.554 23 C -0.065 4.065 24 C -0.176 4.176 25 C -0.225 4.225 26 C -0.048 4.048 27 O -0.185 6.185 28 C -0.032 4.032 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.394 0.606 41 H 0.278 0.722 42 H 0.099 0.901 43 H 0.137 0.863 44 H 0.117 0.883 45 H 0.222 0.778 46 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.734 7.042 17.869 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.351 5.351 3 C 0.015 3.985 4 C -0.102 4.102 5 H 0.115 0.885 6 C -0.151 4.151 7 C -0.132 4.132 8 N -0.173 5.173 9 C -0.098 4.098 10 C 0.229 3.771 11 O -0.503 6.503 12 N -0.211 5.211 13 C -0.460 4.460 14 H 0.089 0.911 15 C -0.209 4.209 16 N -0.559 5.559 17 Si 0.812 3.188 18 H -0.203 1.203 19 H -0.193 1.193 20 H -0.193 1.193 21 C 0.295 3.705 22 O -0.431 6.431 23 C -0.104 4.104 24 C -0.178 4.178 25 C -0.244 4.244 26 C -0.115 4.115 27 O -0.081 6.081 28 C -0.099 4.099 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.228 0.772 41 H 0.087 0.913 42 H 0.117 0.883 43 H 0.155 0.845 44 H 0.135 0.865 45 H 0.239 0.761 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -6.943 6.120 18.289 20.497 hybrid contribution -0.367 -0.053 -2.084 2.117 sum -7.309 6.066 16.204 18.783 Atomic orbital electron populations 1.22089 0.77326 1.04328 1.03509 1.47808 1.08004 1.05163 1.74103 1.21458 0.97677 0.85236 0.94147 1.24043 0.97478 0.91981 0.96676 0.88477 1.23072 0.96936 0.99121 0.95979 1.23622 0.99717 0.92272 0.97577 1.68982 1.15646 1.18687 1.13983 1.22233 0.95144 0.98401 0.93985 1.20756 0.88402 0.84237 0.83705 1.90507 1.16562 1.68046 1.75211 1.41892 1.09648 1.42469 1.27075 1.19593 0.92707 1.24679 1.08990 0.91098 1.25954 0.96766 0.98814 0.99330 1.69664 1.07890 1.43571 1.34805 0.84943 0.77869 0.78099 0.77863 1.20296 1.19313 1.19271 1.20827 0.87771 0.86061 0.75817 1.90747 1.15991 1.87498 1.48840 1.20102 0.96259 0.87899 1.06185 1.20105 1.04218 1.00706 0.92738 1.21813 1.03020 0.99916 0.99669 1.24315 1.03211 1.03060 0.80886 1.84025 1.53508 1.47967 1.22560 1.24364 0.94008 0.90976 1.00576 0.90126 0.89487 0.90855 0.86252 0.91999 0.87291 0.89489 0.93334 0.91736 0.89159 0.91155 0.77185 0.91253 0.88260 0.84544 0.86468 0.76119 0.74765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 10.24 127.77 1.31 2.10 16 2 N -0.62 -13.00 2.74 -846.76 -2.32 -15.32 16 3 C 0.14 2.79 5.58 86.38 0.48 3.27 16 4 C 0.01 0.20 3.37 42.19 0.14 0.34 16 5 H 0.10 1.82 7.77 -2.39 -0.02 1.80 16 6 C -0.11 -2.58 8.00 30.94 0.25 -2.33 16 7 C 0.00 -0.09 6.71 83.58 0.56 0.47 16 8 N -0.45 -16.21 4.67 -906.63 -4.23 -20.44 16 9 C 0.03 1.30 5.31 85.56 0.45 1.76 16 10 C 0.44 22.88 7.62 87.66 0.67 23.55 16 11 O -0.62 -37.85 15.34 -3.06 -0.05 -37.90 16 12 N -0.57 -30.90 5.29 -306.98 -1.62 -32.53 16 13 C -0.33 -19.56 9.68 84.04 0.81 -18.75 16 14 H 0.07 4.57 7.16 -2.91 -0.02 4.55 16 15 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 16 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16 17 Si 0.99 44.26 29.55 68.60 2.03 46.29 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 C 0.51 15.01 6.77 87.66 0.59 15.60 16 22 O -0.55 -22.86 15.05 -3.02 -0.05 -22.91 16 23 C -0.06 -1.59 4.77 29.10 0.14 -1.45 16 24 C -0.18 -5.47 4.66 -19.94 -0.09 -5.56 16 25 C -0.22 -8.36 10.87 22.19 0.24 -8.11 16 26 C -0.05 -1.54 12.09 66.97 0.81 -0.73 16 27 O -0.18 -5.60 10.65 -2.48 -0.03 -5.62 16 28 C -0.03 -0.86 12.01 66.97 0.80 -0.06 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 0.72 8.07 -2.39 -0.02 0.71 16 31 H 0.07 0.84 6.44 -2.39 -0.02 0.83 16 32 H 0.12 1.35 8.07 -2.39 -0.02 1.33 16 33 H 0.06 1.61 7.15 -2.39 -0.02 1.60 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 2.11 7.94 -2.39 -0.02 2.09 16 36 H 0.05 1.99 8.13 -2.39 -0.02 1.97 16 37 H 0.06 2.07 7.70 -2.39 -0.02 2.06 16 38 H 0.09 3.21 7.68 -2.39 -0.02 3.19 16 39 H 0.07 2.32 7.56 -2.39 -0.02 2.30 16 40 H 0.39 20.04 7.90 -92.71 -0.73 19.31 16 41 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 42 H 0.10 2.39 7.40 -2.39 -0.02 2.38 16 43 H 0.14 2.06 8.11 -2.39 -0.02 2.04 16 44 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 45 H 0.22 5.74 8.06 -2.91 -0.02 5.71 16 46 H 0.24 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -87.17 386.69 1.93 -85.25 By element: Atomic # 1 Polarization: 42.69 SS G_CDS: 0.27 Total: 42.96 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 7.64 Total: 10.08 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -7.89 Total: -118.14 kcal Atomic # 8 Polarization: -66.31 SS G_CDS: -0.12 Total: -66.43 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -87.17 1.93 -85.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233874182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.787 kcal (2) G-P(sol) polarization free energy of solvation -87.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds