Wall clock time and date at job start Tue Mar 31 2020 18:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35904 * 117.00247 * 2 1 4 4 C 1.38614 * 120.01563 * 0.02562 * 3 2 1 5 5 C 1.38793 * 119.87278 * 180.02562 * 4 3 2 6 6 N 1.39674 * 120.04583 * 179.97438 * 5 4 3 7 7 C 1.46843 * 110.99626 * 304.22869 * 6 5 4 8 8 C 1.53045 * 109.52258 * 174.16144 * 7 6 5 9 9 C 1.53122 * 109.27588 * 59.18294 * 8 7 6 10 10 N 1.46492 * 109.52134 * 182.44093 * 9 8 7 11 11 C 1.46504 * 120.00214 * 59.67931 * 10 9 8 12 12 C 1.36936 * 120.00249 * 239.68217 * 10 9 8 13 13 H 1.08000 * 119.99859 * 23.26447 * 12 10 9 14 14 C 1.38806 * 120.00281 * 203.27173 * 12 10 9 15 15 N 1.31620 * 120.00142 * 11.64514 * 14 12 10 16 16 Si 1.86803 * 120.00189 * 191.64588 * 14 12 10 17 17 H 1.48508 * 109.46923 * 89.99615 * 16 14 12 18 18 H 1.48501 * 109.47539 * 209.99537 * 16 14 12 19 19 H 1.48497 * 109.46905 * 330.00157 * 16 14 12 20 20 C 1.53121 * 109.15814 * 302.34582 * 9 8 7 21 21 C 1.46848 * 110.99873 * 180.02562 * 6 5 4 22 22 C 1.38967 * 119.90854 * 0.02562 * 5 4 3 23 23 C 1.38116 * 120.03389 * 0.25502 * 22 5 4 24 24 C 1.38224 * 120.12911 * 359.48589 * 23 22 5 25 25 N 1.47995 * 119.95641 * 180.23269 * 24 23 22 26 26 O 1.21801 * 119.99953 * 0.28109 * 25 24 23 27 27 O 1.21803 * 120.00313 * 180.27866 * 25 24 23 28 28 H 1.08996 * 109.46790 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46642 * 300.00025 * 1 2 3 30 30 H 1.08996 * 109.47187 * 59.99829 * 1 2 3 31 31 H 1.08005 * 120.06099 * 0.04676 * 4 3 2 32 32 H 1.08998 * 109.46756 * 294.17650 * 7 6 5 33 33 H 1.09009 * 109.46599 * 54.14665 * 7 6 5 34 34 H 1.08997 * 109.50318 * 299.24221 * 8 7 6 35 35 H 1.09001 * 109.50346 * 179.12168 * 8 7 6 36 36 H 1.09002 * 109.52479 * 62.24626 * 9 8 7 37 37 H 1.09001 * 109.46792 * 94.01871 * 11 10 9 38 38 H 1.08990 * 109.47138 * 214.01821 * 11 10 9 39 39 H 1.09004 * 109.46869 * 334.02631 * 11 10 9 40 40 H 0.97006 * 120.00400 * 180.02562 * 15 14 12 41 41 H 1.08996 * 109.50267 * 297.71389 * 20 9 8 42 42 H 1.09002 * 109.53306 * 177.61575 * 20 9 8 43 43 H 1.09002 * 109.45723 * 305.85042 * 21 6 5 44 44 H 1.09003 * 109.46370 * 65.81809 * 21 6 5 45 45 H 1.08001 * 119.98641 * 179.97438 * 22 5 4 46 46 H 1.07998 * 119.93615 * 179.72871 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3736 0.0005 5 6 1.9247 3.6087 0.0000 6 7 1.1679 4.7826 0.0000 7 6 0.2343 4.8067 -1.1331 8 6 -0.6755 6.0322 -1.0202 9 6 0.1828 7.3002 -1.0150 10 7 -0.6783 8.4736 -0.8485 11 6 -1.5172 8.6031 0.3455 12 6 -0.6992 9.4494 -1.8090 13 1 -0.4060 9.2163 -2.8220 14 6 -1.0971 10.7380 -1.4808 15 7 -1.2331 11.0832 -0.2179 16 14 -1.4397 11.9824 -2.8312 17 1 -2.8703 11.9068 -3.2226 18 1 -1.1337 13.3482 -2.3352 19 1 -0.5877 11.6812 -4.0095 20 6 1.1791 7.2278 0.1455 21 6 2.0350 5.9677 -0.0012 22 6 3.3128 3.6757 -0.0016 23 6 4.0609 2.5147 -0.0080 24 6 3.4318 1.2839 -0.0021 25 7 4.2372 0.0423 -0.0038 26 8 5.4536 0.1055 -0.0052 27 8 3.6838 -1.0427 -0.0037 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 0.2128 2.3186 0.0017 32 1 0.7962 4.8563 -2.0658 33 1 -0.3729 3.9015 -1.1229 34 1 -1.2479 5.9764 -0.0944 35 1 -1.3580 6.0583 -1.8697 36 1 0.7259 7.3764 -1.9570 37 1 -0.9894 9.1883 1.0986 38 1 -2.4484 9.1047 0.0826 39 1 -1.7376 7.6127 0.7439 40 1 -1.5115 11.9837 0.0115 41 1 0.6359 7.1909 1.0897 42 1 1.8217 8.1081 0.1296 43 1 2.7359 5.9057 0.8313 44 1 2.5886 6.0118 -0.9392 45 1 3.8068 4.6361 -0.0025 46 1 5.1395 2.5686 -0.0137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256098970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:28 Heat of formation + Delta-G solvation = 24.354751 kcal Electronic energy + Delta-G solvation = -29257.498539 eV Core-core repulsion = 25152.100907 eV Total energy + Delta-G solvation = -4105.397633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -42.17600 -40.94702 -39.58095 -37.65130 -36.38365 -35.68559 -33.04857 -31.62568 -31.04610 -30.32947 -29.42806 -27.91059 -26.14415 -25.91975 -24.33099 -23.81686 -22.34909 -22.00827 -21.18714 -19.64352 -19.06253 -18.59523 -18.04096 -17.50665 -16.92504 -16.76299 -16.45216 -16.19921 -15.25201 -15.08340 -14.99098 -14.56930 -14.16778 -13.90941 -13.85007 -13.43153 -13.23609 -13.03844 -12.62595 -12.49358 -12.19439 -11.92416 -11.86761 -11.62177 -11.46826 -11.42762 -11.14231 -11.04166 -11.01301 -10.95099 -10.85214 -10.47376 -10.40683 -10.22182 -10.17701 -9.89316 -9.72381 -9.06580 -8.63266 -8.43677 -6.84881 -5.81078 -3.28605 -0.14470 0.73657 1.28915 1.46950 2.57068 2.93079 3.31086 3.35984 3.37767 3.38942 4.06038 4.34603 4.38676 4.51415 4.56861 4.69365 4.73945 4.78073 4.94109 5.02606 5.07347 5.11330 5.16138 5.29410 5.32655 5.34020 5.43659 5.54108 5.57552 5.72859 5.79966 5.89647 5.96784 6.06943 6.22629 6.33806 6.38269 6.55888 6.63211 6.73168 6.79052 6.87687 6.89943 7.30990 7.65189 7.72259 7.75366 8.31185 9.14869 9.77715 10.26858 11.23400 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026517 B = 0.002334 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.670329 B =11995.410542 C =12503.136138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.283 6.283 3 C 0.222 3.778 4 C -0.248 4.248 5 C 0.218 3.782 6 N -0.482 5.482 7 C 0.064 3.936 8 C -0.135 4.135 9 C 0.177 3.823 10 N -0.595 5.595 11 C 0.163 3.837 12 C -0.258 4.258 13 H 0.067 0.933 14 C 0.003 3.997 15 N -0.906 5.906 16 Si 0.905 3.095 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.280 1.280 20 C -0.131 4.131 21 C 0.049 3.951 22 C -0.211 4.211 23 C 0.009 3.991 24 C -0.120 4.120 25 N 0.046 4.954 26 O -0.193 6.193 27 O -0.152 6.152 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.153 0.847 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.042 0.958 39 H -0.001 1.001 40 H 0.253 0.747 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.052 0.948 45 H 0.153 0.847 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.568 -17.951 0.985 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.193 6.193 3 C 0.172 3.828 4 C -0.270 4.270 5 C 0.115 3.885 6 N -0.193 5.193 7 C -0.060 4.060 8 C -0.174 4.174 9 C 0.068 3.932 10 N -0.316 5.316 11 C 0.018 3.982 12 C -0.388 4.388 13 H 0.085 0.915 14 C -0.195 4.195 15 N -0.551 5.551 16 Si 0.735 3.265 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.205 1.205 20 C -0.171 4.171 21 C -0.077 4.077 22 C -0.233 4.233 23 C -0.011 4.011 24 C -0.206 4.206 25 N 0.560 4.440 26 O -0.400 6.400 27 O -0.370 6.370 28 H 0.128 0.872 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.171 0.829 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.171 0.829 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.865 -17.229 1.461 17.717 hybrid contribution 0.118 0.653 -1.048 1.241 sum 3.983 -16.575 0.413 17.052 Atomic orbital electron populations 1.23308 0.77130 1.05069 1.02084 1.86406 1.22357 1.24453 1.86056 1.18393 0.89181 0.85957 0.89312 1.20807 1.01009 0.89538 1.15635 1.19206 0.91406 0.90766 0.87154 1.58770 1.18304 1.00870 1.41377 1.22341 0.93893 1.00715 0.89061 1.22247 0.98400 0.93805 1.02973 1.20357 0.90074 0.86910 0.95824 1.43911 1.45459 1.19862 1.22345 1.20760 0.94694 0.94022 0.88674 1.19207 1.41828 0.88346 0.89387 0.91500 1.25040 1.01633 0.96853 0.95989 1.70062 1.51192 1.18724 1.15108 0.86257 0.78199 0.80868 0.81189 1.21481 1.21703 1.20515 1.22256 0.98609 0.94411 1.01816 1.22513 0.94893 0.89007 1.01335 1.21325 0.92606 0.99078 1.10298 1.20733 1.01756 0.88569 0.89997 1.20335 0.88006 0.85528 1.26752 1.43272 1.01015 1.02443 0.97272 1.94505 0.95895 1.94021 1.55599 1.94561 1.74186 1.15240 1.53044 0.87162 0.91795 0.91895 0.82947 0.93154 0.90498 0.91049 0.90850 0.92148 0.95359 0.93957 0.98233 0.93694 0.91341 0.90639 0.90094 0.92949 0.82907 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.28 -3.04 8.50 -41.60 -0.35 -3.39 16 3 C 0.22 2.47 6.67 -39.25 -0.26 2.21 16 4 C -0.25 -2.43 8.14 -39.24 -0.32 -2.75 16 5 C 0.22 2.28 5.64 -83.81 -0.47 1.80 16 6 N -0.48 -5.51 4.70 -171.16 -0.80 -6.32 16 7 C 0.06 0.73 5.26 -3.83 -0.02 0.71 16 8 C -0.13 -1.96 5.40 -26.65 -0.14 -2.11 16 9 C 0.18 3.15 2.66 -67.81 -0.18 2.97 16 10 N -0.59 -13.68 2.82 -173.35 -0.49 -14.17 16 11 C 0.16 3.76 7.97 59.85 0.48 4.24 16 12 C -0.26 -6.68 9.59 -15.06 -0.14 -6.83 16 13 H 0.07 1.69 7.82 -52.49 -0.41 1.28 16 14 C 0.00 0.09 5.12 -17.43 -0.09 0.00 16 15 N -0.91 -25.40 10.66 55.49 0.59 -24.81 16 16 Si 0.90 21.04 29.57 -169.99 -5.03 16.01 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 C -0.13 -2.06 5.41 -26.65 -0.14 -2.20 16 21 C 0.05 0.58 4.15 -3.83 -0.02 0.56 16 22 C -0.21 -2.01 8.82 -39.36 -0.35 -2.36 16 23 C 0.01 0.09 9.54 -39.63 -0.38 -0.28 16 24 C -0.12 -1.45 6.87 -79.77 -0.55 -2.00 16 25 N 0.05 0.66 4.45 34.05 0.15 0.81 16 26 O -0.19 -2.83 18.44 -29.46 -0.54 -3.37 16 27 O -0.15 -2.33 17.23 -36.51 -0.63 -2.96 16 28 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 30 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.15 1.23 5.39 -52.48 -0.28 0.95 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.73 6.70 -51.92 -0.35 0.38 16 34 H 0.07 1.11 6.57 -51.93 -0.34 0.77 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.10 7.87 -51.93 -0.41 0.69 16 37 H 0.03 0.71 7.41 -51.93 -0.38 0.33 16 38 H 0.04 1.07 7.25 -51.93 -0.38 0.69 16 39 H 0.00 -0.02 6.38 -51.93 -0.33 -0.35 16 40 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.07 1.16 7.60 -51.93 -0.39 0.77 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.08 0.84 6.98 -51.93 -0.36 0.48 16 44 H 0.05 0.57 7.73 -51.93 -0.40 0.17 16 45 H 0.15 1.22 5.80 -52.49 -0.30 0.91 16 46 H 0.16 1.31 7.60 -52.49 -0.40 0.91 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -30.60 366.02 -9.55 -40.15 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -6.37 Total: -2.54 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -1.60 Total: -4.93 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: -0.55 Total: -44.50 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -1.53 Total: -9.72 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.60 -9.55 -40.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256098970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.509 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds