Wall clock time and date at job start Tue Mar 31 2020 18:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35904 * 117.00247 * 2 1 4 4 C 1.38614 * 120.01563 * 0.02562 * 3 2 1 5 5 C 1.38793 * 119.87278 * 180.02562 * 4 3 2 6 6 N 1.39674 * 120.04583 * 179.97438 * 5 4 3 7 7 C 1.46843 * 110.99626 * 304.22869 * 6 5 4 8 8 C 1.53045 * 109.52258 * 174.16144 * 7 6 5 9 9 C 1.53122 * 109.27588 * 59.18294 * 8 7 6 10 10 N 1.46492 * 109.52134 * 182.44093 * 9 8 7 11 11 C 1.46504 * 120.00214 * 59.67931 * 10 9 8 12 12 C 1.36936 * 120.00249 * 239.68217 * 10 9 8 13 13 H 1.08000 * 119.99859 * 23.26447 * 12 10 9 14 14 C 1.38806 * 120.00281 * 203.27173 * 12 10 9 15 15 N 1.31620 * 120.00142 * 11.64514 * 14 12 10 16 16 Si 1.86803 * 120.00189 * 191.64588 * 14 12 10 17 17 H 1.48508 * 109.46923 * 89.99615 * 16 14 12 18 18 H 1.48501 * 109.47539 * 209.99537 * 16 14 12 19 19 H 1.48497 * 109.46905 * 330.00157 * 16 14 12 20 20 C 1.53121 * 109.15814 * 302.34582 * 9 8 7 21 21 C 1.46848 * 110.99873 * 180.02562 * 6 5 4 22 22 C 1.38967 * 119.90854 * 0.02562 * 5 4 3 23 23 C 1.38116 * 120.03389 * 0.25502 * 22 5 4 24 24 C 1.38224 * 120.12911 * 359.48589 * 23 22 5 25 25 N 1.47995 * 119.95641 * 180.23269 * 24 23 22 26 26 O 1.21801 * 119.99953 * 0.28109 * 25 24 23 27 27 O 1.21803 * 120.00313 * 180.27866 * 25 24 23 28 28 H 1.08996 * 109.46790 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46642 * 300.00025 * 1 2 3 30 30 H 1.08996 * 109.47187 * 59.99829 * 1 2 3 31 31 H 1.08005 * 120.06099 * 0.04676 * 4 3 2 32 32 H 1.08998 * 109.46756 * 294.17650 * 7 6 5 33 33 H 1.09009 * 109.46599 * 54.14665 * 7 6 5 34 34 H 1.08997 * 109.50318 * 299.24221 * 8 7 6 35 35 H 1.09001 * 109.50346 * 179.12168 * 8 7 6 36 36 H 1.09002 * 109.52479 * 62.24626 * 9 8 7 37 37 H 1.09001 * 109.46792 * 94.01871 * 11 10 9 38 38 H 1.08990 * 109.47138 * 214.01821 * 11 10 9 39 39 H 1.09004 * 109.46869 * 334.02631 * 11 10 9 40 40 H 0.97006 * 120.00400 * 180.02562 * 15 14 12 41 41 H 1.08996 * 109.50267 * 297.71389 * 20 9 8 42 42 H 1.09002 * 109.53306 * 177.61575 * 20 9 8 43 43 H 1.09002 * 109.45723 * 305.85042 * 21 6 5 44 44 H 1.09003 * 109.46370 * 65.81809 * 21 6 5 45 45 H 1.08001 * 119.98641 * 179.97438 * 22 5 4 46 46 H 1.07998 * 119.93615 * 179.72871 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3736 0.0005 5 6 1.9247 3.6087 0.0000 6 7 1.1679 4.7826 0.0000 7 6 0.2343 4.8067 -1.1331 8 6 -0.6755 6.0322 -1.0202 9 6 0.1828 7.3002 -1.0150 10 7 -0.6783 8.4736 -0.8485 11 6 -1.5172 8.6031 0.3455 12 6 -0.6992 9.4494 -1.8090 13 1 -0.4060 9.2163 -2.8220 14 6 -1.0971 10.7380 -1.4808 15 7 -1.2331 11.0832 -0.2179 16 14 -1.4397 11.9824 -2.8312 17 1 -2.8703 11.9068 -3.2226 18 1 -1.1337 13.3482 -2.3352 19 1 -0.5877 11.6812 -4.0095 20 6 1.1791 7.2278 0.1455 21 6 2.0350 5.9677 -0.0012 22 6 3.3128 3.6757 -0.0016 23 6 4.0609 2.5147 -0.0080 24 6 3.4318 1.2839 -0.0021 25 7 4.2372 0.0423 -0.0038 26 8 5.4536 0.1055 -0.0052 27 8 3.6838 -1.0427 -0.0037 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 0.2128 2.3186 0.0017 32 1 0.7962 4.8563 -2.0658 33 1 -0.3729 3.9015 -1.1229 34 1 -1.2479 5.9764 -0.0944 35 1 -1.3580 6.0583 -1.8697 36 1 0.7259 7.3764 -1.9570 37 1 -0.9894 9.1883 1.0986 38 1 -2.4484 9.1047 0.0826 39 1 -1.7376 7.6127 0.7439 40 1 -1.5115 11.9837 0.0115 41 1 0.6359 7.1909 1.0897 42 1 1.8217 8.1081 0.1296 43 1 2.7359 5.9057 0.8313 44 1 2.5886 6.0118 -0.9392 45 1 3.8068 4.6361 -0.0025 46 1 5.1395 2.5686 -0.0137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256098970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:27 Heat of formation + Delta-G solvation = 7.605169 kcal Electronic energy + Delta-G solvation = -29258.224856 eV Core-core repulsion = 25152.100907 eV Total energy + Delta-G solvation = -4106.123949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.15209 -41.82737 -40.46201 -38.69503 -37.46087 -37.05291 -34.51082 -32.61439 -32.39743 -31.22203 -30.73253 -28.50731 -28.02783 -27.05898 -25.59380 -24.80927 -23.62678 -22.89003 -22.32931 -20.54171 -20.34379 -19.61785 -18.93008 -18.75338 -18.51282 -17.60384 -17.36953 -16.89477 -16.86234 -16.00365 -15.88016 -15.65168 -15.52162 -15.05485 -14.99187 -14.66749 -14.36608 -13.96821 -13.91765 -13.79618 -13.11593 -13.02413 -12.87629 -12.82923 -12.66410 -12.58067 -12.54453 -12.35261 -12.27171 -12.16893 -12.14989 -12.05240 -11.99048 -11.77890 -11.49708 -11.22231 -11.07885 -10.61362 -9.80319 -9.29044 -8.74930 -7.81546 -5.29902 -1.09645 -0.00174 0.32991 0.54114 1.46315 1.47584 1.55583 1.91819 2.12413 2.48303 2.51335 3.30052 3.32569 3.54542 3.59966 3.76513 3.82324 3.93805 3.99146 4.07275 4.17308 4.22765 4.33699 4.35887 4.39449 4.48983 4.57813 4.62568 4.69334 4.69778 4.74212 4.77490 4.87139 4.91737 5.07131 5.08770 5.16700 5.28268 5.36931 5.45966 5.54502 5.65011 5.73447 5.78801 5.87765 6.02728 6.34844 6.65795 7.17041 7.90413 8.33900 9.21118 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026517 B = 0.002334 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.670329 B =11995.410542 C =12503.136138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.304 6.304 3 C 0.219 3.781 4 C -0.240 4.240 5 C 0.216 3.784 6 N -0.487 5.487 7 C 0.070 3.930 8 C -0.122 4.122 9 C 0.169 3.831 10 N -0.611 5.611 11 C 0.182 3.818 12 C -0.259 4.259 13 H 0.071 0.929 14 C -0.054 4.054 15 N -0.939 5.939 16 Si 0.965 3.035 17 H -0.288 1.288 18 H -0.298 1.298 19 H -0.268 1.268 20 C -0.121 4.121 21 C 0.057 3.943 22 C -0.204 4.204 23 C 0.013 3.987 24 C -0.138 4.138 25 N 0.047 4.953 26 O -0.204 6.204 27 O -0.185 6.185 28 H 0.125 0.875 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.173 0.827 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.056 0.944 37 H -0.001 1.001 38 H 0.011 0.989 39 H 0.030 0.970 40 H 0.246 0.754 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.172 0.828 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 -19.075 0.171 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.214 6.214 3 C 0.168 3.832 4 C -0.262 4.262 5 C 0.114 3.886 6 N -0.199 5.199 7 C -0.054 4.054 8 C -0.162 4.162 9 C 0.062 3.938 10 N -0.333 5.333 11 C 0.037 3.963 12 C -0.390 4.390 13 H 0.089 0.911 14 C -0.249 4.249 15 N -0.586 5.586 16 Si 0.794 3.206 17 H -0.215 1.215 18 H -0.225 1.225 19 H -0.193 1.193 20 C -0.161 4.161 21 C -0.069 4.069 22 C -0.226 4.226 23 C -0.007 4.007 24 C -0.226 4.226 25 N 0.556 4.444 26 O -0.411 6.411 27 O -0.397 6.397 28 H 0.143 0.857 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.190 0.810 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.017 0.983 38 H 0.030 0.970 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.086 0.914 45 H 0.190 0.810 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 4.049 -18.448 0.630 18.898 hybrid contribution 0.034 0.978 -0.798 1.263 sum 4.083 -17.470 -0.168 17.942 Atomic orbital electron populations 1.23631 0.74963 1.06632 1.03289 1.86401 1.24679 1.24578 1.85759 1.18518 0.88957 0.86604 0.89122 1.20930 1.01859 0.88687 1.14719 1.19237 0.91715 0.90371 0.87319 1.58700 1.18473 1.01005 1.41673 1.22299 0.93749 0.99922 0.89453 1.22022 0.98265 0.93545 1.02358 1.20628 0.90421 0.86332 0.96421 1.44144 1.46696 1.20827 1.21640 1.20423 0.92938 0.94733 0.88214 1.19552 1.40227 0.88948 0.90227 0.91133 1.25758 1.02575 0.98756 0.97776 1.70226 1.52942 1.18615 1.16789 0.85300 0.77895 0.78280 0.79159 1.21539 1.22482 1.19250 1.22007 0.98125 0.96018 0.99921 1.22408 0.94327 0.87152 1.03035 1.21505 0.92274 0.99553 1.09262 1.20928 1.02613 0.87863 0.89308 1.20653 0.88529 0.84950 1.28426 1.43595 1.01057 1.03068 0.96728 1.94475 0.96592 1.94230 1.55770 1.94546 1.74165 1.16370 1.54587 0.85658 0.90720 0.90403 0.81019 0.92226 0.87806 0.91908 0.91244 0.92555 0.98253 0.97028 0.95173 0.94451 0.92839 0.92752 0.88111 0.91427 0.81040 0.81070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.20 16 2 O -0.30 -6.01 8.50 -71.27 -0.61 -6.61 16 3 C 0.22 4.37 6.67 22.49 0.15 4.52 16 4 C -0.24 -3.84 8.14 22.49 0.18 -3.66 16 5 C 0.22 3.67 5.64 38.20 0.22 3.89 16 6 N -0.49 -9.28 4.70 -695.44 -3.27 -12.54 16 7 C 0.07 1.31 5.26 86.33 0.45 1.76 16 8 C -0.12 -3.27 5.40 30.65 0.17 -3.11 16 9 C 0.17 5.79 2.66 45.07 0.12 5.91 16 10 N -0.61 -28.14 2.82 -702.34 -1.98 -30.12 16 11 C 0.18 8.54 7.97 127.77 1.02 9.56 16 12 C -0.26 -13.44 9.59 84.03 0.81 -12.63 16 13 H 0.07 3.53 7.82 -2.91 -0.02 3.51 16 14 C -0.05 -2.90 5.12 84.86 0.43 -2.47 16 15 N -0.94 -54.09 10.66 21.65 0.23 -53.86 16 16 Si 0.96 43.62 29.57 68.60 2.03 45.65 16 17 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 C -0.12 -3.64 5.41 30.65 0.17 -3.47 16 21 C 0.06 1.15 4.15 86.32 0.36 1.51 16 22 C -0.20 -3.13 8.82 22.42 0.20 -2.93 16 23 C 0.01 0.22 9.54 22.24 0.21 0.43 16 24 C -0.14 -3.13 6.87 36.50 0.25 -2.88 16 25 N 0.05 1.33 4.45 -46.18 -0.21 1.13 16 26 O -0.20 -5.88 18.44 18.88 0.35 -5.53 16 27 O -0.18 -5.69 17.23 25.62 0.44 -5.25 16 28 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 30 H 0.08 0.54 7.66 -2.39 -0.02 0.52 16 31 H 0.17 2.01 5.39 -2.91 -0.02 1.99 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.45 6.70 -2.38 -0.02 1.43 16 34 H 0.06 1.80 6.57 -2.39 -0.02 1.78 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.06 1.97 7.87 -2.39 -0.02 1.95 16 37 H 0.00 -0.04 7.41 -2.39 -0.02 -0.06 16 38 H 0.01 0.58 7.25 -2.39 -0.02 0.56 16 39 H 0.03 1.20 6.38 -2.38 -0.02 1.18 16 40 H 0.25 13.90 8.31 -92.70 -0.77 13.13 16 41 H 0.05 1.76 7.60 -2.39 -0.02 1.75 16 42 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.10 1.70 6.98 -2.39 -0.02 1.68 16 44 H 0.07 1.21 7.73 -2.39 -0.02 1.19 16 45 H 0.17 1.96 5.80 -2.91 -0.02 1.95 16 46 H 0.17 2.42 7.60 -2.91 -0.02 2.39 16 Total: -1.00 -68.24 366.02 3.84 -64.40 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.00 Total: 5.11 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 5.84 Total: -2.37 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -5.22 Total: -95.40 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.18 Total: -17.39 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -68.24 3.84 -64.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256098970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.003 kcal (2) G-P(sol) polarization free energy of solvation -68.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds